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Title: Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes: OC Oxidation Processes Across Vegetation

Abstract

In light of increasing terrestrial carbon (C) transport across aquatic boundaries, the mechanisms governing organic carbon (OC) oxidation along terrestrial-aquatic interfaces are crucial to future climate predictions. Here, we investigate biochemistry, metabolic pathways, and thermodynamics corresponding to OC oxidation in the Columbia River corridor. We leverage natural vegetative differences to encompass variation in terrestrial C inputs. Our results suggest that decreases in terrestrial C deposition associated with diminished riparian vegetation induce oxidation of physically-bound (i.e., mineral and microbial) OC at terrestrial-aquatic interfaces. We also find that contrasting metabolic pathways oxidize OC in the presence and absence of vegetation and—in direct conflict with the concept of ‘priming’—that inputs of water-soluble and thermodynamically-favorable terrestrial OC protects bound-OC from oxidation. Based on our results, we propose a mechanistic conceptualization of OC oxidation along terrestrial-aquatic interfaces that can be used to model heterogeneous patterns of OC loss under changing land cover distributions.

Authors:
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [1]; ORCiD logo [1]; ORCiD logo [1];  [1];  [1];  [1];  [1]; ORCiD logo [1]
  1. Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
  2. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab. (EMSL)
Publication Date:
Research Org.:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1508288
Alternate Identifier(s):
OSTI ID: 1414483
Report Number(s):
PNNL-SA-125144
Journal ID: ISSN 2169-8953
Grant/Contract Number:  
AC05-76RL01830
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Geophysical Research. Biogeosciences
Additional Journal Information:
Journal Volume: 122; Journal Issue: 12; Journal ID: ISSN 2169-8953
Publisher:
American Geophysical Union
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; terrestrial‐aquatic interface; priming; recalcitrant; hyporheic zone; FTICR‐MS; aerobic metabolism

Citation Formats

Graham, Emily B., Tfaily, Malak M., Crump, Alex R., Goldman, Amy E., Bramer, Lisa M., Arntzen, Evan, Romero, Elvira, Resch, C. Tom, Kennedy, David W., and Stegen, James C. Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes: OC Oxidation Processes Across Vegetation. United States: N. p., 2017. Web. doi:10.1002/2017JG003967.
Graham, Emily B., Tfaily, Malak M., Crump, Alex R., Goldman, Amy E., Bramer, Lisa M., Arntzen, Evan, Romero, Elvira, Resch, C. Tom, Kennedy, David W., & Stegen, James C. Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes: OC Oxidation Processes Across Vegetation. United States. https://doi.org/10.1002/2017JG003967
Graham, Emily B., Tfaily, Malak M., Crump, Alex R., Goldman, Amy E., Bramer, Lisa M., Arntzen, Evan, Romero, Elvira, Resch, C. Tom, Kennedy, David W., and Stegen, James C. Mon . "Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes: OC Oxidation Processes Across Vegetation". United States. https://doi.org/10.1002/2017JG003967. https://www.osti.gov/servlets/purl/1508288.
@article{osti_1508288,
title = {Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes: OC Oxidation Processes Across Vegetation},
author = {Graham, Emily B. and Tfaily, Malak M. and Crump, Alex R. and Goldman, Amy E. and Bramer, Lisa M. and Arntzen, Evan and Romero, Elvira and Resch, C. Tom and Kennedy, David W. and Stegen, James C.},
abstractNote = {In light of increasing terrestrial carbon (C) transport across aquatic boundaries, the mechanisms governing organic carbon (OC) oxidation along terrestrial-aquatic interfaces are crucial to future climate predictions. Here, we investigate biochemistry, metabolic pathways, and thermodynamics corresponding to OC oxidation in the Columbia River corridor. We leverage natural vegetative differences to encompass variation in terrestrial C inputs. Our results suggest that decreases in terrestrial C deposition associated with diminished riparian vegetation induce oxidation of physically-bound (i.e., mineral and microbial) OC at terrestrial-aquatic interfaces. We also find that contrasting metabolic pathways oxidize OC in the presence and absence of vegetation and—in direct conflict with the concept of ‘priming’—that inputs of water-soluble and thermodynamically-favorable terrestrial OC protects bound-OC from oxidation. Based on our results, we propose a mechanistic conceptualization of OC oxidation along terrestrial-aquatic interfaces that can be used to model heterogeneous patterns of OC loss under changing land cover distributions.},
doi = {10.1002/2017JG003967},
journal = {Journal of Geophysical Research. Biogeosciences},
number = 12,
volume = 122,
place = {United States},
year = {Mon Nov 27 00:00:00 EST 2017},
month = {Mon Nov 27 00:00:00 EST 2017}
}

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Works referenced in this record:

Comparative organic geochemistries of soils and marine sediments
journal, December 1997


Differences in DOM of rewetted and natural peatlands – Results from high-field FT-ICR-MS and bulk optical parameters
journal, May 2017


The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter
journal, February 2002


Beyond carbon and nitrogen: how the microbial energy economy couples elemental cycles in diverse ecosystems
journal, February 2011

  • Burgin, Amy J.; Yang, Wendy H.; Hamilton, Stephen K.
  • Frontiers in Ecology and the Environment, Vol. 9, Issue 1
  • DOI: 10.1890/090227

Ferrozine---a new spectrophotometric reagent for iron
journal, June 1970

  • Stookey, Lawrence L.
  • Analytical Chemistry, Vol. 42, Issue 7, p. 779-781
  • DOI: 10.1021/ac60289a016

Sedimentary organic matter preservation: an assessment and speculative synthesis
journal, April 1995


Automated Analysis of Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectra of Natural Organic Matter
journal, July 2006

  • Kujawinski, Elizabeth B.; Behn, Mark D.
  • Analytical Chemistry, Vol. 78, Issue 13
  • DOI: 10.1021/ac0600306

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism
journal, December 2016


Analytical approaches for characterizing soil organic matter
journal, July 2000


Priming effects: Interactions between living and dead organic matter
journal, September 2010


The boundless carbon cycle
journal, September 2009

  • Battin, Tom J.; Luyssaert, Sebastiaan; Kaplan, Louis A.
  • Nature Geoscience, Vol. 2, Issue 9
  • DOI: 10.1038/ngeo618

KEGG: Kyoto Encyclopedia of Genes and Genomes
journal, January 2000

  • Kanehisa, Minoru; Goto, Susumu
  • Nucleic Acids Research, Vol. 28, Issue 1, p. 27-30
  • DOI: 10.1093/nar/28.1.27

Characterization of dissolved organic matter in Lake Superior and its watershed using ultrahigh resolution mass spectrometry
journal, February 2012


Effects of fluctuating river flow on groundwater/surface water mixing in the hyporheic zone of a regulated, large cobble bed river
journal, January 2006

  • Arntzen, Evan V.; Geist, David R.; Dresel, P. Evan
  • River Research and Applications, Vol. 22, Issue 8
  • DOI: 10.1002/rra.947

Resazurin as a “smart” tracer for quantifying metabolically active transient storage in stream ecosystems
journal, January 2009

  • Haggerty, Roy; Martí, Eugènia; Argerich, Alba
  • Journal of Geophysical Research, Vol. 114, Issue G3
  • DOI: 10.1029/2008JG000942

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes: Deterministic assembly of hyporheic microbiomes
journal, March 2017

  • Graham, Emily B.; Crump, Alex R.; Resch, Charles T.
  • Environmental Microbiology, Vol. 19, Issue 4
  • DOI: 10.1111/1462-2920.13720

Flavonoids as antioxidants in plants: Location and functional significance
journal, November 2012


Thermodynamic constraints on the utility of ecological stoichiometry for explaining global biogeochemical patterns
journal, August 2015

  • Helton, Ashley M.; Ardón, Marcelo; Bernhardt, Emily S.
  • Ecology Letters, Vol. 18, Issue 10
  • DOI: 10.1111/ele.12487

Episodic sediment accumulation on Amazonian flood plains influenced by El Niño/Southern Oscillation
journal, October 2003

  • Aalto, Rolf; Maurice-Bourgoin, Laurence; Dunne, Thomas
  • Nature, Vol. 425, Issue 6957
  • DOI: 10.1038/nature02002

Stochastic and deterministic assembly processes in subsurface microbial communities
journal, March 2012

  • Stegen, James C.; Lin, Xueju; Konopka, Allan E.
  • The ISME Journal, Vol. 6, Issue 9
  • DOI: 10.1038/ismej.2012.22

Biophysical controls on organic carbon fluxes in fluvial networks
journal, January 2008

  • Battin, Tom J.; Kaplan, Louis A.; Findlay, Stuart
  • Nature Geoscience, Vol. 1, Issue 2
  • DOI: 10.1038/ngeo101

Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
journal, March 2012

  • Lin, Xueju; McKinley, James; Resch, Charles T.
  • The ISME Journal, Vol. 6, Issue 9
  • DOI: 10.1038/ismej.2012.26

Biosynthesis and Biological Functions of Terpenoids in Plants
book, January 2015


Biogeochemical drivers of microbial community convergence across actively retreating glaciers
journal, October 2016


Molecular formulae of marine and terrigenous dissolved organic matter detected by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
journal, July 2005

  • Koch, Boris P.; Witt, Matthias; Engbrodt, Ralph
  • Geochimica et Cosmochimica Acta, Vol. 69, Issue 13
  • DOI: 10.1016/j.gca.2005.02.027

Persistence of soil organic matter as an ecosystem property
journal, October 2011

  • Schmidt, Michael W. I.; Torn, Margaret S.; Abiven, Samuel
  • Nature, Vol. 478, Issue 7367
  • DOI: 10.1038/nature10386

Use of electrical imaging and distributed temperature sensing methods to characterize surface water–groundwater exchange regulating uranium transport at the Hanford 300 Area, Washington
journal, October 2010

  • Slater, Lee D.; Ntarlagiannis, Dimitrios; Day‐Lewis, Frederick D.
  • Water Resources Research, Vol. 46, Issue 10
  • DOI: 10.1029/2010WR009110

Physiology and Molecular Biology of Phenylpropanoid Metabolism
journal, June 1989


The molecularly-uncharacterized component of nonliving organic matter in natural environments
journal, October 2000


Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains
journal, April 2017


Terrestrial and marine perspectives on modeling organic matter degradation pathways
journal, July 2015

  • Burd, Adrian B.; Frey, Serita; Cabre, Anna
  • Global Change Biology, Vol. 22, Issue 1
  • DOI: 10.1111/gcb.12987

Biogeochemical Processes and Microbial Characteristics across Groundwater−Surface Water Boundaries of the Hanford Reach of the Columbia River
journal, November 2003

  • Moser, Duane P.; Fredrickson, James K.; Geist, David R.
  • Environmental Science & Technology, Vol. 37, Issue 22
  • DOI: 10.1021/es034457v

Measuring and Understanding Carbon Storage in Afforested Soils by Physical Fractionation
journal, January 2002

  • Six, J.; Callewaert, P.; Lenders, S.
  • Soil Science Society of America Journal, Vol. 66, Issue 6
  • DOI: 10.2136/sssaj2002.1981

Quantifying the degradation of organic matter in marine sediments: A review and synthesis
journal, August 2013


Ab initio prediction of metabolic networks using Fourier transform mass spectrometry data
journal, July 2006


Consequences of More Extreme Precipitation Regimes for Terrestrial Ecosystems
journal, October 2008

  • Knapp, Alan K.; Beier, Claus; Briske, David D.
  • BioScience, Vol. 58, Issue 9
  • DOI: 10.1641/B580908

Global soil carbon projections are improved by modelling microbial processes
journal, July 2013

  • Wieder, William R.; Bonan, Gordon B.; Allison, Steven D.
  • Nature Climate Change, Vol. 3, Issue 10
  • DOI: 10.1038/nclimate1951

Physical Model for the Decay and Preservation of Marine Organic Carbon
journal, June 2007


Advanced Solvent Based Methods for Molecular Characterization of Soil Organic Matter by High-Resolution Mass Spectrometry
journal, April 2015


The contentious nature of soil organic matter
journal, November 2015


Graphical Method for Analysis of Ultrahigh-Resolution Broadband Mass Spectra of Natural Organic Matter, the Van Krevelen Diagram
journal, October 2003

  • Kim, Sunghwan; Kramer, Robert W.; Hatcher, Patrick G.
  • Analytical Chemistry, Vol. 75, Issue 20
  • DOI: 10.1021/ac034415p

The effects of stress on plant cuticular waxes: Tansley review
journal, July 2006


Sequential extraction protocol for organic matter from soils and sediments using high resolution mass spectrometry
journal, June 2017


Experimental assessment of a possible microbial priming effect in a humic boreal lake
journal, September 2015

  • Dorado-García, Irene; Syväranta, Jari; Devlin, Shawn P.
  • Aquatic Sciences, Vol. 78, Issue 1
  • DOI: 10.1007/s00027-015-0425-4

Causes of variation in soil carbon simulations from CMIP5 Earth system models and comparison with observations
journal, January 2013

  • Todd-Brown, K. E. O.; Randerson, J. T.; Post, W. M.
  • Biogeosciences, Vol. 10, Issue 3
  • DOI: 10.5194/bg-10-1717-2013

Priming effect: bridging the gap between terrestrial and aquatic ecology
journal, October 2010

  • Guenet, Bertrand; Danger, Michael; Abbadie, Luc
  • Ecology, Vol. 91, Issue 10
  • DOI: 10.1890/09-1968.1

Persistence of dissolved organic matter in lakes related to its molecular characteristics
journal, May 2015

  • Kellerman, Anne M.; Kothawala, Dolly N.; Dittmar, Thorsten
  • Nature Geoscience, Vol. 8, Issue 6
  • DOI: 10.1038/ngeo2440

Anthropogenic perturbation of the carbon fluxes from land to ocean
journal, June 2013

  • Regnier, Pierre; Friedlingstein, Pierre; Ciais, Philippe
  • Nature Geoscience, Vol. 6, Issue 8
  • DOI: 10.1038/ngeo1830

The role of terrestrially derived organic carbon in the coastal ocean: A changing paradigm and the priming effect
journal, November 2011


Chemical composition of dissolved organic matter draining permafrost soils
journal, October 2015


Persistence of uranium groundwater plumes: Contrasting mechanisms at two DOE sites in the groundwater–river interaction zone
journal, April 2013


Modified Freeze-Core Technique for Sampling the Permanently Wetted Streambed
journal, November 1994


Influence of acidification on the optical properties and molecular composition of dissolved organic matter
journal, November 2011

  • Tfaily, Malak M.; Podgorski, David C.; Corbett, Jane E.
  • Analytica Chimica Acta, Vol. 706, Issue 2
  • DOI: 10.1016/j.aca.2011.08.037

Precipitation patterns alter growth of temperate vegetation
journal, January 2005

  • Fang, Jingyun; Piao, Shilong; Zhou, Liming
  • Geophysical Research Letters, Vol. 32, Issue 21
  • DOI: 10.1029/2005GL024231

Water movement in the zone of interaction between groundwater and the Columbia River, Hanford Site, Washington
journal, January 2004


No evidence of aquatic priming effects in hyporheic zone microcosms
journal, June 2014

  • Bengtsson, Mia M.; Wagner, Karoline; Burns, Nancy R.
  • Scientific Reports, Vol. 4, Issue 1
  • DOI: 10.1038/srep05187

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover
journal, April 2016

  • Stegen, James C.; Fredrickson, James K.; Wilkins, Michael J.
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms11237

Metabolism of mineral-sorbed organic matter and microbial lifestyles in fluvial ecosystems: Microbial Metabolism of Organominerals
journal, February 2016

  • Hunter, William Ross; Niederdorfer, Robert; Gernand, Anna
  • Geophysical Research Letters, Vol. 43, Issue 4
  • DOI: 10.1002/2016GL067719

Very long chain fatty acid and lipid signaling in the response of plants to pathogens
journal, February 2009

  • Raffaele, Sylvain; Leger, Amandine; Roby, Dominique
  • Plant Signaling & Behavior, Vol. 4, Issue 2
  • DOI: 10.4161/psb.4.2.7580

Tri-tube Freeze-core Procedure for Sampling Stream Gravels
journal, April 1980


Absence of a priming effect on dissolved organic carbon degradation in lake water: Absence of priming in lake water
journal, January 2015

  • Catalán, Núria; Kellerman, Anne M.; Peter, Hannes
  • Limnology and Oceanography, Vol. 60, Issue 1
  • DOI: 10.1002/lno.10016

Dissolved organic matter in pore water of Arctic Ocean sediments: Environmental influence on molecular composition
journal, July 2016


Degradation of natural organic matter: A thermodynamic analysis
journal, April 2011

  • LaRowe, Douglas E.; Van Cappellen, Philippe
  • Geochimica et Cosmochimica Acta, Vol. 75, Issue 8
  • DOI: 10.1016/j.gca.2011.01.020

Future productivity and carbon storage limited by terrestrial nutrient availability
journal, April 2015

  • Wieder, William R.; Cleveland, Cory C.; Smith, W. Kolby
  • Nature Geoscience, Vol. 8, Issue 6
  • DOI: 10.1038/ngeo2413

Thermodynamic Constraints on Nitrogentransformations and Other Biogeochemicalprocesses at Soil–Stream Interfaces
journal, March 1998


A novel solid-state NMR method for the investigation of trivalent lanthanide sorption on amorphous silica at low surface loadings
journal, January 2016

  • Mason, H. E.; Begg, J. D.; Maxwell, R. S.
  • Environmental Science: Processes & Impacts, Vol. 18, Issue 7
  • DOI: 10.1039/C6EM00082G

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Co-located contemporaneous mapping of morphological, hydrological, chemical, and biological conditions in a 5th-order mountain stream network, Oregon, USA
journal, January 2019

  • Ward, Adam S.; Zarnetske, Jay P.; Baranov, Viktor
  • Earth System Science Data, Vol. 11, Issue 4
  • DOI: 10.5194/essd-11-1567-2019

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journal, September 2019


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journal, January 2019