skip to main content
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum

Authors:
; ; ;
Publication Date:
Research Org.:
Univ. of Illinois at Urbana-Champaign, IL (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1411986
Alternate Identifier(s):
OSTI ID: 1502102; OSTI ID: 1575209; OSTI ID: 1575210
Grant/Contract Number:  
SC0012400
Resource Type:
Published Article
Journal Name:
Theoretical and Applied Genetics
Additional Journal Information:
Journal Name: Theoretical and Applied Genetics Journal Volume: 131 Journal Issue: 3; Journal ID: ISSN 0040-5752
Publisher:
Springer Science + Business Media
Country of Publication:
Germany
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Fernandes, Samuel B., Dias, Kaio O. G., Ferreira, Daniel F., and Brown, Patrick J. Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum. Germany: N. p., 2017. Web. doi:10.1007/s00122-017-3033-y.
Fernandes, Samuel B., Dias, Kaio O. G., Ferreira, Daniel F., & Brown, Patrick J. Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum. Germany. doi:10.1007/s00122-017-3033-y.
Fernandes, Samuel B., Dias, Kaio O. G., Ferreira, Daniel F., and Brown, Patrick J. Thu . "Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum". Germany. doi:10.1007/s00122-017-3033-y.
@article{osti_1411986,
title = {Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum},
author = {Fernandes, Samuel B. and Dias, Kaio O. G. and Ferreira, Daniel F. and Brown, Patrick J.},
abstractNote = {},
doi = {10.1007/s00122-017-3033-y},
journal = {Theoretical and Applied Genetics},
number = 3,
volume = 131,
place = {Germany},
year = {2017},
month = {12}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1007/s00122-017-3033-y

Citation Metrics:
Cited by: 6 works
Citation information provided by
Web of Science

Figures / Tables:

Table 1 Table 1: Training and validation sets used in cross-validation for each genomic selection model

Save / Share:

Works referenced in this record:

Accuracy of multi-trait genomic selection using different methods
journal, July 2011


Accuracy of genomic prediction when combining two related crossbred populations1
journal, October 2014

  • Vallée, A.; van Arendonk, J. A. M.; Bovenhuis, H.
  • Journal of Animal Science, Vol. 92, Issue 10
  • DOI: 10.2527/jas.2014-8109

Sorghum improvement for energy production
journal, January 1984


Usefulness of Multiparental Populations of Maize ( Zea mays L.) for Genome-Based Prediction
journal, September 2014


TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
journal, February 2014


Efficient Methods to Compute Genomic Predictions
journal, November 2008


Best Linear Unbiased Estimation and Prediction under a Selection Model
journal, June 1975


Multiple-Trait Genomic Selection Methods Increase Genetic Value Prediction Accuracy
journal, October 2012


Genetic parameters and evaluations from single- and multiple-trait analysis of dairy cow fertility and milk production
journal, June 2003


A Fast, Powerful Method for Detecting Identity by Descent
journal, February 2011

  • Browning, Brian L.; Browning, Sharon R.
  • The American Journal of Human Genetics, Vol. 88, Issue 2
  • DOI: 10.1016/j.ajhg.2011.01.010

Genomic prediction contributing to a promising global strategy to turbocharge gene banks
journal, October 2016


Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding
journal, June 2012


Fast gapped-read alignment with Bowtie 2
journal, March 2012

  • Langmead, Ben; Salzberg, Steven L.
  • Nature Methods, Vol. 9, Issue 4
  • DOI: 10.1038/nmeth.1923

Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes
journal, November 2015

  • Schulthess, Albert Wilhelm; Wang, Yu; Miedaner, Thomas
  • Theoretical and Applied Genetics, Vol. 129, Issue 2
  • DOI: 10.1007/s00122-015-2626-6

Shrinkage Estimation of the Realized Relationship Matrix
journal, November 2012

  • Endelman, Jeffrey B.; Jannink, Jean-Luc
  • G3: Genes|Genomes|Genetics, Vol. 2, Issue 11
  • DOI: 10.1534/g3.112.004259

Testing strategies for genomic selection in aquaculture breeding programs
journal, June 2009

  • Sonesson, Anna K.; Meuwissen, Theo HE
  • Genetics Selection Evolution, Vol. 41, Issue 1
  • DOI: 10.1186/1297-9686-41-37

Genomic Heritability: What Is It?
journal, May 2015


QTL for fibre-related traits in grain × sweet sorghum as a tool for the enhancement of sorghum as a biomass crop
journal, July 2011

  • Shiringani, Amukelani L.; Friedt, Wolfgang
  • Theoretical and Applied Genetics, Vol. 123, Issue 6
  • DOI: 10.1007/s00122-011-1642-4

Agronomic and Energetic Potential of Biomass Sorghum Genotypes
journal, January 2015

  • Rodrigues Castro, Fernanda Maria; Bruzi, Adriano Teodoro; Rodrigues Nunes, José Airton
  • American Journal of Plant Sciences, Vol. 06, Issue 11
  • DOI: 10.4236/ajps.2015.611187

Sire and Cow Evaluation Under Multiple Trait Models
journal, July 1984


Plant Breeding with Genomic Selection: Gain per Unit Time and Cost
journal, January 2010


A Comparison of Multivariate Genome-Wide Association Methods
journal, April 2014


Genomewide Association for Sugar Yield in Sweet Sorghum
journal, January 2015


Invited review: Genomic selection in dairy cattle: Progress and challenges
journal, February 2009

  • Hayes, B. J.; Bowman, P. J.; Chamberlain, A. J.
  • Journal of Dairy Science, Vol. 92, Issue 2
  • DOI: 10.3168/jds.2008-1646

Field high-throughput phenotyping: the new crop breeding frontier
journal, January 2014


Perspectives for Genomic Selection Applications and Research in Plants
journal, January 2015


Accelerating the Switchgrass (Panicum virgatum L.) Breeding Cycle Using Genomic Selection Approaches
journal, November 2014


Accounting for Natural and Extraneous Variation in the Analysis of Field Experiments
journal, September 1997

  • Gilmour, Arthur R.; Cullis, Brian R.; Verbyla, Arūnas P.
  • Journal of Agricultural, Biological, and Environmental Statistics, Vol. 2, Issue 3
  • DOI: 10.2307/1400446

Genomic Predictability of Interconnected Biparental Maize Populations
journal, March 2013


Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program
journal, January 2011


Increased accuracy of artificial selection by using the realized relationship matrix
journal, February 2009


Genomic Selection in Plant Breeding: A Comparison of Models
journal, January 2012


Comparison of single-trait and multiple-trait genomic prediction models
journal, January 2014


Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers
journal, January 2012


Inclusion of Dominance Effects in the Multivariate GBLUP Model
journal, April 2016

  • dos Santos, Jhonathan Pedroso Rigal; Vasconcellos, Renato Coelho de Castro; Pires, Luiz Paulo Miranda
  • PLOS ONE, Vol. 11, Issue 4
  • DOI: 10.1371/journal.pone.0152045

Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods
journal, January 2015

  • Gawenda, Inka; Thorwarth, Patrick; Günther, Torsten
  • Plant Breeding, Vol. 134, Issue 1
  • DOI: 10.1111/pbr.12237

    Works referencing / citing this record:

    Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum ( Sorghum bicolor )
    journal, January 2019


    Epistasis Detection and Modeling for Genomic Selection in Cowpea (Vigna unguiculata L. Walp.)
    journal, July 2019


      Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.