skip to main content
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: d -Cysteine Ligands Control Metal Geometries within De Novo Designed Three-Stranded Coiled Coils

Authors:
 [1];  [2];  [3];  [4];  [5];  [3]
  1. Department of Chemistry, University of Michigan, Ann Arbor Michigan 48109 USA, Present address: Department Chemistry, Faculty of Science, King Mongkut's University of Technology Thonburi (KMUTT), Bang Mod, ThungKhru, Bangkok 10140 Thailand
  2. Department of Chemistry, University of Michigan, Ann Arbor Michigan 48109 USA, Present address: School of Chemistry, University of Birmingham, Edgbaston, Birmingham B15 2TT UK
  3. Department of Chemistry, University of Michigan, Ann Arbor Michigan 48109 USA
  4. Department of Chemistry, University of Copenhagen, Universitetsparken 5 2100 København Ø Denmark
  5. Life Sciences Institute, University of Michigan, Ann Arbor Michigan 48109 USA
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1401777
Grant/Contract Number:  
AC02-06CH11357; 085P1000817
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
Chemistry - A European Journal
Additional Journal Information:
Journal Name: Chemistry - A European Journal Journal Volume: 23 Journal Issue: 34; Journal ID: ISSN 0947-6539
Publisher:
Wiley Blackwell (John Wiley & Sons)
Country of Publication:
Germany
Language:
English

Citation Formats

Ruckthong, Leela, Peacock, Anna F. A., Pascoe, Cherilyn E., Hemmingsen, Lars, Stuckey, Jeanne A., and Pecoraro, Vincent L. d -Cysteine Ligands Control Metal Geometries within De Novo Designed Three-Stranded Coiled Coils. Germany: N. p., 2017. Web. doi:10.1002/chem.201700660.
Ruckthong, Leela, Peacock, Anna F. A., Pascoe, Cherilyn E., Hemmingsen, Lars, Stuckey, Jeanne A., & Pecoraro, Vincent L. d -Cysteine Ligands Control Metal Geometries within De Novo Designed Three-Stranded Coiled Coils. Germany. doi:10.1002/chem.201700660.
Ruckthong, Leela, Peacock, Anna F. A., Pascoe, Cherilyn E., Hemmingsen, Lars, Stuckey, Jeanne A., and Pecoraro, Vincent L. Fri . "d -Cysteine Ligands Control Metal Geometries within De Novo Designed Three-Stranded Coiled Coils". Germany. doi:10.1002/chem.201700660.
@article{osti_1401777,
title = {d -Cysteine Ligands Control Metal Geometries within De Novo Designed Three-Stranded Coiled Coils},
author = {Ruckthong, Leela and Peacock, Anna F. A. and Pascoe, Cherilyn E. and Hemmingsen, Lars and Stuckey, Jeanne A. and Pecoraro, Vincent L.},
abstractNote = {},
doi = {10.1002/chem.201700660},
journal = {Chemistry - A European Journal},
number = 34,
volume = 23,
place = {Germany},
year = {2017},
month = {5}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1002/chem.201700660

Citation Metrics:
Cited by: 3 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Using Nonnatural Amino Acids to Control Metal-Coordination Number in Three-Stranded Coiled Coils
journal, April 2006

  • Lee, Kyung-Hoon; Cabello, Chris; Hemmingsen, Lars
  • Angewandte Chemie International Edition, Vol. 45, Issue 18
  • DOI: 10.1002/anie.200504548

Zinc-finger hydrolase: Computational selection of a linker and a sequence towards metal activation with a synthetic αββ protein
journal, December 2010

  • Patel, Kirti; Srivastava, Kinshuk Raj; Durani, Susheel
  • Bioorganic & Medicinal Chemistry, Vol. 18, Issue 23
  • DOI: 10.1016/j.bmc.2010.10.003

The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryotic metal resistance
journal, June 2003


Comparison of the Binding of Cadmium(II), Mercury(II), and Arsenic(III) to the de Novo Designed Peptides TRI L12C and TRI L16C
journal, July 2002

  • Matzapetakis, Manolis; Farrer, Brian T.; Weng, Tsu-Chien
  • Journal of the American Chemical Society, Vol. 124, Issue 27
  • DOI: 10.1021/ja017520u

Role of Cysteinyl Residues in Sensing Pb(II), Cd(II), and Zn(II) by the Plasmid pI258 CadC Repressor
journal, February 2001

  • Sun, Yan; Wong, Marco D.; Rosen, Barry P.
  • Journal of Biological Chemistry, Vol. 276, Issue 18
  • DOI: 10.1074/jbc.M010595200

A double catgrip mixed l and d mini protein only 20 residues long
journal, June 2007

  • Rana, Soumendra; Kundu, Bijoy; Durani, Susheel
  • Bioorganic & Medicinal Chemistry, Vol. 15, Issue 11
  • DOI: 10.1016/j.bmc.2007.03.030

Tris(phenanthroline)ruthenium(II): stereoselectivity in binding to DNA
journal, April 1984

  • Barton, Jacqueline K.; Danishefsky, Avis; Goldberg, Jonathan
  • Journal of the American Chemical Society, Vol. 106, Issue 7
  • DOI: 10.1021/ja00319a043

Site-Selective Metal Binding by Designed α-Helical Peptides
journal, December 2005

  • Matzapetakis, Manolis; Pecoraro, Vincent L.
  • Journal of the American Chemical Society, Vol. 127, Issue 51
  • DOI: 10.1021/ja055433m

Mirrors in the PDB: left-handed α-turns guide design with D-amino acids
journal, January 2009


De Novo Design of Mercury-Binding Two- and Three-Helical Bundles
journal, July 1997

  • Dieckmann, Gregg R.; McRorie, Donald K.; Tierney, David L.
  • Journal of the American Chemical Society, Vol. 119, Issue 26
  • DOI: 10.1021/ja964351i

Metal-binding promiscuity in artificial metalloenzyme design
journal, April 2015


Probing the Role of the C−H···O Hydrogen Bond Stabilized Polypeptide Chain Reversal at the C-terminus of Designed Peptide Helices. Structural Characterization of Three Decapeptides
journal, December 2003

  • Aravinda, Subrayashastry; Shamala, Narayanaswamy; Bandyopadhyay, Abhishek
  • Journal of the American Chemical Society, Vol. 125, Issue 49
  • DOI: 10.1021/ja0372762

Direct Observation of Nanosecond Water Exchange Dynamics at a Protein Metal Site
journal, December 2016

  • Stachura, Monika; Chakraborty, Saumen; Gottberg, Alexander
  • Journal of the American Chemical Society, Vol. 139, Issue 1
  • DOI: 10.1021/jacs.6b11525

Linear Free-Energy Analysis of Mercury(II) and Cadmium(II) Binding to Three-Stranded Coiled Coils
journal, August 2005

  • Ghosh, Debdip; Lee, Kyung-Hoon; Demeler, Borries
  • Biochemistry, Vol. 44, Issue 31
  • DOI: 10.1021/bi0506674

First principle calculations of 113Cd chemical shifts for proteins and model systems
journal, June 2004

  • Hemmingsen, Lars; Olsen, Lars; Antony, Jens
  • JBIC Journal of Biological Inorganic Chemistry, Vol. 9, Issue 5
  • DOI: 10.1007/s00775-004-0553-0

Identifying important structural characteristics of arsenic resistance proteins by using designed three-stranded coiled coils
journal, July 2007

  • Touw, D. S.; Nordman, C. E.; Stuckey, J. A.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 29, p. 11969-11974
  • DOI: 10.1073/pnas.0701979104

Antibacterial agents based on the cyclic d,l-α-peptide architecture
journal, July 2001

  • Fernandez-Lopez, Sara; Kim, Hui-Sun; Choi, Ellen C.
  • Nature, Vol. 412, Issue 6845
  • DOI: 10.1038/35086601

The long-wavelength limit of the structure factor of amorphous silicon and vitreous silica
journal, December 2009

  • de Graff, Adam M. R.; Thorpe, M. F.
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 66, Issue 1
  • DOI: 10.1107/S0108767309045206

Engineering of betabellin 14D: Disulfide-induced folding of a β-sheet protein
journal, July 1994


Design and engineering of artificial oxygen-activating metalloenzymes
journal, January 2016

  • Nastri, Flavia; Chino, Marco; Maglio, Ornella
  • Chemical Society Reviews, Vol. 45, Issue 18
  • DOI: 10.1039/C5CS00923E

Excited-state molecular structures captured by X-ray transient absorption spectroscopy: a decade and beyond
journal, February 2010

  • Chen, Lin X.; Zhang, Xiaoyi; Lockard, Jenny V.
  • Acta Crystallographica Section A Foundations of Crystallography, Vol. 66, Issue 2
  • DOI: 10.1107/S0108767309051496

Hydrolytic catalysis and structural stabilization in a designed metalloprotein
journal, November 2011

  • Zastrow, Melissa L.; Peacock, Anna F. A.; Stuckey, Jeanne A.
  • Nature Chemistry, Vol. 4, Issue 2
  • DOI: 10.1038/nchem.1201

Crystal Structure of the Staphylococcus aureus pI258 CadC Cd(II)/Pb(II)/Zn(II)-Responsive Repressor
journal, June 2005


Ab Initio Calculations of Electric Field Gradients in Cadmium Complexes
journal, January 1996

  • Hemmingsen, Lars; Ryde, Ulf
  • The Journal of Physical Chemistry, Vol. 100, Issue 12
  • DOI: 10.1021/jp9526410

Assessing the Integrity of Designed Homomeric Parallel Three-Stranded Coiled Coils in the Presence of Metal Ions
journal, December 2006

  • Iranzo, Olga; Ghosh, Debdip; Pecoraro, Vincent L.
  • Inorganic Chemistry, Vol. 45, Issue 25
  • DOI: 10.1021/ic061183e

Probing a Homoleptic PbS3 Coordination Environment in a Designed Peptide Using 207Pb NMR Spectroscopy: Implications for Understanding the Molecular Basis of Lead Toxicity
journal, September 2010

  • Neupane, Kosh P.; Pecoraro, Vincent L.
  • Angewandte Chemie International Edition, Vol. 49, Issue 44
  • DOI: 10.1002/anie.201004429

The Correlation of 113 Cd NMR and 111m Cd PAC Spectroscopies Provides a Powerful Approach for the Characterization of the Structure of Cd II -Substituted Zn II Proteins
journal, February 2009

  • Iranzo, Olga; Jakusch, Tamas; Lee, Kyung-Hoon
  • Chemistry - A European Journal, Vol. 15, Issue 15
  • DOI: 10.1002/chem.200802105

De Novo Design and Structural Characterization of Proteins and Metalloproteins
journal, June 1999


A Rationally Designed Turn-Helix Peptide
journal, June 1999

  • Dhanasekaran, M.; Fabiola, F.; Pattabhi, V.
  • Journal of the American Chemical Society, Vol. 121, Issue 23
  • DOI: 10.1021/ja984237v

A small peptide stereochemically customized as a globular fold with a molecular cleft
journal, January 2005

  • Rana, Soumendra; Kundu, Bijoy; Durani, Susheel
  • Chemical Communications, Issue 2
  • DOI: 10.1039/b413802c

Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure: Artificial Diiron Enzymes with a Four-Helix Bundle Structure
journal, July 2015

  • Chino, Marco; Maglio, Ornella; Nastri, Flavia
  • European Journal of Inorganic Chemistry, Vol. 2015, Issue 21
  • DOI: 10.1002/ejic.201500470

Metalloprotein design using genetic code expansion
journal, January 2014

  • Hu, Cheng; Chan, Sunney I.; Sawyer, Elizabeth B.
  • Chem. Soc. Rev., Vol. 43, Issue 18
  • DOI: 10.1039/C4CS00018H

Designing functional metalloproteins: From structural to catalytic metal sites
journal, September 2013

  • Zastrow, Melissa L.; Pecoraro, Vincent L.
  • Coordination Chemistry Reviews, Vol. 257, Issue 17-18
  • DOI: 10.1016/j.ccr.2013.02.007

Arsenic(III)−Cysteine Interactions Stabilize Three-Helix Bundles in Aqueous Solution
journal, November 2000

  • Farrer, Brian T.; McClure, Craig P.; Penner-Hahn, James E.
  • Inorganic Chemistry, Vol. 39, Issue 24
  • DOI: 10.1021/ic0010149

The Protein Conformation of Cd-Substituted Horse Liver Alcohol Dehydrogenase and its Metal-Site Coordination Geometry in Binary and Ternary Inhibitor Complexes
journal, October 1996


Magnetic Shielding of Nuclei in Molecules
journal, June 1950


Chemical Effects in Nuclear Magnetic Resonance and in Diamagnetic Susceptibility
journal, April 1952


Biological Applications of Perturbed Angular Correlations of γ-Ray Spectroscopy
journal, September 2004

  • Hemmingsen, Lars; Sas, Klára Nárcisz; Danielsen, Eva
  • Chemical Reviews, Vol. 104, Issue 9
  • DOI: 10.1021/cr030030v

Non-protein amino acids in peptide design
journal, October 2003

  • Aravinda, S.; Shamala, N.; Roy, Rituparna S.
  • Journal of Chemical Sciences, Vol. 115, Issue 5-6
  • DOI: 10.1007/BF02708230

Structural Comparisons of Apo- and Metalated Three-Stranded Coiled Coils Clarify Metal Binding Determinants in Thiolate Containing Designed Peptides
journal, September 2010

  • Chakraborty, Saumen; Touw, Debra S.; Peacock, Anna F. A.
  • Journal of the American Chemical Society, Vol. 132, Issue 38
  • DOI: 10.1021/ja101812c

Using Nonnatural Amino Acids to Control Metal-Coordination Number in Three-Stranded Coiled Coils
journal, April 2006

  • Lee, Kyung-Hoon; Cabello, Chris; Hemmingsen, Lars
  • Angewandte Chemie, Vol. 118, Issue 18
  • DOI: 10.1002/ange.200504548

Switching the Chirality of the Metal Environment Alters the Coordination Mode in Designed Peptides
journal, September 2009

  • Peacock, Anna F. A.; Stuckey, Jeanne A.; Pecoraro, Vincent L.
  • Angewandte Chemie, Vol. 121, Issue 40
  • DOI: 10.1002/ange.200902166

Control of Metal Coordination Number in de Novo Designed Peptides through Subtle Sequence Modifications
journal, August 2004

  • Lee, Kyung-Hoon; Matzapetakis, Manolis; Mitra, Soumya
  • Journal of the American Chemical Society, Vol. 126, Issue 30
  • DOI: 10.1021/ja048839s

Metallopeptide catalysts and artificial metalloenzymes containing unnatural amino acids
journal, April 2015


Using diastereopeptides to control metal ion coordination in proteins
journal, October 2008

  • Peacock, A. F. A.; Hemmingsen, L.; Pecoraro, V. L.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 43
  • DOI: 10.1073/pnas.0806792105

Stereospecific peptide folds. A rationally designed molecular bracelet
journal, January 2004

  • Rana, Soumendra; Kundu, Bijoy; Durani, Susheel
  • Chemical Communications, Issue 21
  • DOI: 10.1039/b410532j

Switching the Chirality of the Metal Environment Alters the Coordination Mode in Designed Peptides
journal, September 2009

  • Peacock, Anna F. A.; Stuckey, Jeanne A.; Pecoraro, Vincent L.
  • Angewandte Chemie International Edition, Vol. 48, Issue 40
  • DOI: 10.1002/anie.200902166

Harnessing natures ability to control metal ion coordination geometry using de novo designed peptides
journal, January 2009

  • Peacock, Anna F. A.; Iranzo, Olga; Pecoraro, Vincent L.
  • Dalton Transactions, Issue 13
  • DOI: 10.1039/b818306f

Protein Design with l - and d -α-Amino Acid Structures as the Alphabet
journal, October 2008

  • Durani, Susheel
  • Accounts of Chemical Research, Vol. 41, Issue 10
  • DOI: 10.1021/ar700265t

Artificial transmembrane ion channels from self-assembling peptide nanotubes
journal, May 1994

  • Ghadiri, M. Reza; Granja, Juan R.; Buehler, Lukas K.
  • Nature, Vol. 369, Issue 6478
  • DOI: 10.1038/369301a0

An Unusual C–H · · · O Hydrogen Bond Mediated Reversal of Polypeptide Chain Direction in a Synthetic Peptide Helix
journal, July 2000

  • Aravinda, S.; Shamala, N.; Pramanik, Animesh
  • Biochemical and Biophysical Research Communications, Vol. 273, Issue 3
  • DOI: 10.1006/bbrc.2000.3026

Protein Design: Toward Functional Metalloenzymes
journal, January 2014

  • Yu, Fangting; Cangelosi, Virginia M.; Zastrow, Melissa L.
  • Chemical Reviews, Vol. 114, Issue 7
  • DOI: 10.1021/cr400458x

The role of protonation and metal chelation preferences in defining the properties of mercury-binding coiled coils 1 1Edited by P. E. Wright
journal, July 1998

  • Dieckmann, Gregg R.; McRorie, Donald K.; Lear, James D.
  • Journal of Molecular Biology, Vol. 280, Issue 5
  • DOI: 10.1006/jmbi.1998.1891

Recent achievments in the design and engineering of artificial metalloenzymes
journal, April 2014


Tissue sulfhydryl groups
journal, May 1959


Understanding Metalloprotein Folding Using a de Novo Design Strategy
journal, December 2004

  • Ghosh, Debdip; Pecoraro, Vincent L.
  • Inorganic Chemistry, Vol. 43, Issue 25
  • DOI: 10.1021/ic048939z

De Novo Protein Design as a Methodology for Synthetic Bioinorganic Chemistry
journal, July 2015


Phaser crystallographic software
journal, July 2007

  • McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
  • Journal of Applied Crystallography, Vol. 40, Issue 4
  • DOI: 10.1107/S0021889807021206

NMR Structural Analysis of Cadmium Sensing by Winged Helix Repressor CmtR
journal, June 2007

  • Banci, Lucia; Bertini, Ivano; Cantini, Francesca
  • Journal of Biological Chemistry, Vol. 282, Issue 41
  • DOI: 10.1074/jbc.M701119200

A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins
journal, September 2016

  • Ruckthong, Leela; Zastrow, Melissa L.; Stuckey, Jeanne A.
  • Journal of the American Chemical Society, Vol. 138, Issue 36
  • DOI: 10.1021/jacs.6b07165