Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides
Abstract
Summary Genome‐wide association studies (GWAS) have been used extensively to dissect the genetic regulation of complex traits in plants. These studies have focused largely on the analysis of common genetic variants despite the abundance of rare polymorphisms in several species, and their potential role in trait variation. Here, we conducted the first GWAS in Populus deltoides , a genetically diverse keystone forest species in North America and an important short rotation woody crop for the bioenergy industry. We searched for associations between eight growth and wood composition traits, and common and low‐frequency single‐nucleotide polymorphisms detected by targeted resequencing of 18 153 genes in a population of 391 unrelated individuals. To increase power to detect associations with low‐frequency variants, multiple‐marker association tests were used in combination with single‐marker association tests. Significant associations were discovered for all phenotypes and are indicative that low‐frequency polymorphisms contribute to phenotypic variance of several bioenergy traits. Our results suggest that both common and low‐frequency variants need to be considered for a comprehensive understanding of the genetic regulation of complex traits, particularly in species that carry large numbers of rare polymorphisms. These polymorphisms may be critical for the development of specialized plant feedstocks for bioenergy.
- Authors:
-
- Univ. of Florida, Gainesville, FL (United States)
- Michigan State Univ., East Lansing, MI (United States)
- National Renewable Energy Lab. (NREL), Golden, CO (United States)
- Publication Date:
- Research Org.:
- National Renewable Energy Laboratory (NREL), Golden, CO (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1337536
- Alternate Identifier(s):
- OSTI ID: 1401014
- Report Number(s):
- NREL/JA-5100-67133
Journal ID: ISSN 0028-646X
- Grant/Contract Number:
- AC36-08GO28308; FG02-05ER64114; SC0003893; IOS-1444543
- Resource Type:
- Accepted Manuscript
- Journal Name:
- New Phytologist
- Additional Journal Information:
- Journal Volume: 213; Journal Issue: 2; Journal ID: ISSN 0028-646X
- Publisher:
- Wiley
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 09 BIOMASS FUELS; 59 BASIC BIOLOGICAL SCIENCES; eastern cottonwood; exome resequencing; genome-wide association studies (GWAS); low-frequency single-nucleotide polymorphisms (SNPs); poplar; Populus deltoides
Citation Formats
Fahrenkrog, Annette M., Neves, Leandro G., Resende, Jr., Marcio F. R., Vazquez, Ana I., de los Campos, Gustavo, Dervinis, Christopher, Sykes, Robert, Davis, Mark, Davenport, Ruth, Barbazuk, William B., and Kirst, Matias. Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides. United States: N. p., 2016.
Web. doi:10.1111/nph.14154.
Fahrenkrog, Annette M., Neves, Leandro G., Resende, Jr., Marcio F. R., Vazquez, Ana I., de los Campos, Gustavo, Dervinis, Christopher, Sykes, Robert, Davis, Mark, Davenport, Ruth, Barbazuk, William B., & Kirst, Matias. Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides. United States. https://doi.org/10.1111/nph.14154
Fahrenkrog, Annette M., Neves, Leandro G., Resende, Jr., Marcio F. R., Vazquez, Ana I., de los Campos, Gustavo, Dervinis, Christopher, Sykes, Robert, Davis, Mark, Davenport, Ruth, Barbazuk, William B., and Kirst, Matias. Tue .
"Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides". United States. https://doi.org/10.1111/nph.14154. https://www.osti.gov/servlets/purl/1337536.
@article{osti_1337536,
title = {Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides},
author = {Fahrenkrog, Annette M. and Neves, Leandro G. and Resende, Jr., Marcio F. R. and Vazquez, Ana I. and de los Campos, Gustavo and Dervinis, Christopher and Sykes, Robert and Davis, Mark and Davenport, Ruth and Barbazuk, William B. and Kirst, Matias},
abstractNote = {Summary Genome‐wide association studies (GWAS) have been used extensively to dissect the genetic regulation of complex traits in plants. These studies have focused largely on the analysis of common genetic variants despite the abundance of rare polymorphisms in several species, and their potential role in trait variation. Here, we conducted the first GWAS in Populus deltoides , a genetically diverse keystone forest species in North America and an important short rotation woody crop for the bioenergy industry. We searched for associations between eight growth and wood composition traits, and common and low‐frequency single‐nucleotide polymorphisms detected by targeted resequencing of 18 153 genes in a population of 391 unrelated individuals. To increase power to detect associations with low‐frequency variants, multiple‐marker association tests were used in combination with single‐marker association tests. Significant associations were discovered for all phenotypes and are indicative that low‐frequency polymorphisms contribute to phenotypic variance of several bioenergy traits. Our results suggest that both common and low‐frequency variants need to be considered for a comprehensive understanding of the genetic regulation of complex traits, particularly in species that carry large numbers of rare polymorphisms. These polymorphisms may be critical for the development of specialized plant feedstocks for bioenergy.},
doi = {10.1111/nph.14154},
journal = {New Phytologist},
number = 2,
volume = 213,
place = {United States},
year = {Tue Sep 06 00:00:00 EDT 2016},
month = {Tue Sep 06 00:00:00 EDT 2016}
}
Web of Science
Works referenced in this record:
Integrating genomic selection into dairy cattle breeding programmes: a review
journal, December 2012
- Bouquet, A.; Juga, J.
- animal, Vol. 7, Issue 5
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
journal, January 2014
- Baes, Christine F.; Dolezal, Marlies A.; Koltes, James E.
- BMC Genomics, Vol. 15, Issue 1
Explaining additional genetic variation in complex traits
journal, April 2014
- Robinson, Matthew R.; Wray, Naomi R.; Visscher, Peter M.
- Trends in Genetics, Vol. 30, Issue 4
The origin and evolution of lignin biosynthesis: Tansley review
journal, June 2010
- Weng, Jing-Ke; Chapple, Clint
- New Phytologist, Vol. 187, Issue 2
Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms
journal, October 2008
- Quesada, Tania; Li, Zhen; Dervinis, Christopher
- New Phytologist, Vol. 180, Issue 2, p. 408-420
The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome
journal, March 2009
- Sjödin, Andreas; Street, Nathaniel Robert; Sandberg, Göran
- New Phytologist, Vol. 182, Issue 4
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
journal, March 2014
- Lee, Wan-Ping; Stromberg, Michael P.; Ward, Alistair
- PLoS ONE, Vol. 9, Issue 3
Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
journal, February 2014
- Zook, Justin M.; Chapman, Brad; Wang, Jason
- Nature Biotechnology, Vol. 32, Issue 3
Rare and common variants: twenty arguments
journal, January 2012
- Gibson, Greg
- Nature Reviews Genetics, Vol. 13, Issue 2
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
journal, September 2007
- Purcell, Shaun; Neale, Benjamin; Todd-Brown, Kathe
- The American Journal of Human Genetics, Vol. 81, Issue 3
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
journal, April 2014
- Pfeifer, Bastian; Wittelsbürger, Ulrich; Ramos-Onsins, Sebastian E.
- Molecular Biology and Evolution, Vol. 31, Issue 7
Rare-Variant Association Analysis: Study Designs and Statistical Tests
journal, July 2014
- Lee, Seunggeung; Abecasis, Gonçalo R.; Boehnke, Michael
- The American Journal of Human Genetics, Vol. 95, Issue 1
Optimal Unified Approach for Rare-Variant Association Testing with Application to Small-Sample Case-Control Whole-Exome Sequencing Studies
journal, August 2012
- Lee, Seunggeun; Emond, Mary J.; Bamshad, Michael J.
- The American Journal of Human Genetics, Vol. 91, Issue 2
Population Structure of Hispanics in the United States: The Multi-Ethnic Study of Atherosclerosis
journal, April 2012
- Manichaikul, Ani; Palmas, Walter; Rodriguez, Carlos J.
- PLoS Genetics, Vol. 8, Issue 4
Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem
journal, September 2010
- Wegrzyn, Jill L.; Eckert, Andrew J.; Choi, Minyoung
- New Phytologist, Vol. 188, Issue 2
Detecting the number of clusters of individuals using the software structure: a simulation study
journal, July 2005
- Evanno, G.; Regnaut, S.; Goudet, J.
- Molecular Ecology, Vol. 14, Issue 8
Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations
journal, August 2014
- Evans, Luke M.; Slavov, Gancho T.; Rodgers-Melnick, Eli
- Nature Genetics, Vol. 46, Issue 10
Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa
journal, April 2014
- McKown, Athena D.; Klápště, Jaroslav; Guy, Robert D.
- New Phytologist, Vol. 203, Issue 2
Network analysis reveals the relationship among wood properties, gene expression levels and genotypes of natural Populus trichocarpa accessions
journal, July 2013
- Porth, Ilga; Klápště, Jaroslav; Skyba, Oleksandr
- New Phytologist, Vol. 200, Issue 3
Methods for Detecting Associations with Rare Variants for Common Diseases: Application to Analysis of Sequence Data
journal, September 2008
- Li, Bingshan; Leal, Suzanne M.
- The American Journal of Human Genetics, Vol. 83, Issue 3
Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene
journal, April 2011
- Marroni, Fabio; Pinosio, Sara; Zaina, Giusi
- Tree Genetics & Genomes, Vol. 7, Issue 5
Interactions between chromosomal and nonchromosomal elements reveal missing heritability
journal, May 2014
- Edwards, M. D.; Symbor-Nagrabska, A.; Dollard, L.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 21
Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture
journal, January 2012
- Zhou, Lecong; Holliday, Jason A.
- BMC Genomics, Vol. 13, Issue 1
Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms
journal, July 2013
- Porth, Ilga; Klapšte, Jaroslav; Skyba, Oleksandr
- New Phytologist, Vol. 200, Issue 3, p. 710-726
Poplar as a feedstock for biofuels: A review of compositional characteristics
journal, March 2010
- Sannigrahi, Poulomi; Ragauskas, Arthur J.; Tuskan, Gerald A.
- Biofuels, Bioproducts and Biorefining, Vol. 4, Issue 2
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
journal, October 2011
- Earl, Dent A.; vonHoldt, Bridgett M.
- Conservation Genetics Resources, Vol. 4, Issue 2
Quantitative genetic analysis of biomass and wood chemistry of Populus under different nitrogen levels
journal, March 2009
- Novaes, Evandro; Osorio, Luis; Drost, Derek R.
- New Phytologist, Vol. 182, Issue 4, p. 878-890
Comparative interrogation of the developing xylem transcriptomes of two wood-forming species: Populus trichocarpa and Eucalyptus grandis
journal, February 2015
- Hefer, Charles A.; Mizrachi, Eshchar; Myburg, Alexander A.
- New Phytologist, Vol. 206, Issue 4
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
journal, September 2011
- Li, H.
- Bioinformatics, Vol. 27, Issue 21
A framework for variation discovery and genotyping using next-generation DNA sequencing data
journal, April 2011
- DePristo, Mark A.; Banks, Eric; Poplin, Ryan
- Nature Genetics, Vol. 43, Issue 5
Common SNPs explain a large proportion of the heritability for human height
journal, June 2010
- Yang, Jian; Benyamin, Beben; McEvoy, Brian P.
- Nature Genetics, Vol. 42, Issue 7
From association to prediction: statistical methods for the dissection and selection of complex traits in plants
journal, April 2015
- Lipka, Alexander E.; Kandianis, Catherine B.; Hudson, Matthew E.
- Current Opinion in Plant Biology, Vol. 24
Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes
journal, September 2014
- Trubetskoy, Vassily; Rodriguez, Alex; Dave, Uptal
- Bioinformatics, Vol. 31, Issue 2
Inheritance, gene expression, and lignin characterization in a mutant pine deficient in cinnamyl alcohol dehydrogenase
journal, July 1997
- MacKay, J. J.; O'Malley, D. M.; Presnell, T.
- Proceedings of the National Academy of Sciences, Vol. 94, Issue 15
Populus Breeding: From the Classical to the Genomic Approach
book, December 2009
- Stanton, Brian J.; B. Neale, David; Li, Shanwen
- Genetics and Genomics of Populus
snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package
journal, January 2007
- Luna, A.; Nicodemus, K. K.
- Bioinformatics, Vol. 23, Issue 6
Genomic selection in crops, trees and forages: a review
journal, January 2014
- Lin, Z.; Hayes, B. J.; Daetwyler, H. D.
- Crop and Pasture Science, Vol. 65, Issue 11
Geographical and environmental gradients shape phenotypic trait variation and genetic structure in Populus trichocarpa
journal, November 2013
- McKown, Athena D.; Guy, Robert D.; Klápště, Jaroslav
- New Phytologist, Vol. 201, Issue 4
Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test
journal, July 2011
- Wu, Michael C.; Lee, Seunggeun; Cai, Tianxi
- The American Journal of Human Genetics, Vol. 89, Issue 1
Natural Variations and Genome-Wide Association Studies in Crop Plants
journal, April 2014
- Huang, Xuehui; Han, Bin
- Annual Review of Plant Biology, Vol. 65, Issue 1
A high-performance computing toolset for relatedness and principal component analysis of SNP data
journal, October 2012
- Zheng, X.; Levine, D.; Shen, J.
- Bioinformatics, Vol. 28, Issue 24
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
journal, May 2007
- Jakobsson, M.; Rosenberg, N. A.
- Bioinformatics, Vol. 23, Issue 14
Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study
journal, February 2013
- Vanholme, Bartel; Cesarino, Igor; Goeminne, Geert
- New Phytologist, Vol. 198, Issue 3
pophelper : an R package and web app to analyse and visualize population structure
journal, February 2016
- Francis, R. M.
- Molecular Ecology Resources, Vol. 17, Issue 1
Using Populus as a lignocellulosic feedstock for bioethanol
journal, February 2015
- Porth, Ilga; El-Kassaby, Yousry A.
- Biotechnology Journal, Vol. 10, Issue 4
Sequence Kernel Association Tests for the Combined Effect of Rare and Common Variants
journal, June 2013
- Ionita-Laza, Iuliana; Lee, Seunggeun; Makarov, Vlad
- The American Journal of Human Genetics, Vol. 92, Issue 6
Exome resequencing reveals signatures of demographic and adaptive processes across the genome and range of black cottonwood ( Populus trichocarpa )
journal, May 2014
- Zhou, L.; Bawa, R.; Holliday, J. A.
- Molecular Ecology, Vol. 23, Issue 10
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
journal, July 2010
- McKenna, A.; Hanna, M.; Banks, E.
- Genome Research, Vol. 20, Issue 9
Genome-wide association studies in plants: the missing heritability is in the field
journal, January 2011
- Brachi, Benjamin; Morris, Geoffrey P.; Borevitz, Justin O.
- Genome Biology, Vol. 12, Issue 10
Some Evolutionary Consequences of Being a Tree
journal, December 2006
- Petit, Rémy J.; Hampe, Arndt
- Annual Review of Ecology, Evolution, and Systematics, Vol. 37, Issue 1
Accurate whole human genome sequencing using reversible terminator chemistry
journal, November 2008
- Bentley, David R.; Balasubramanian, Shankar; Swerdlow, Harold P.
- Nature, Vol. 456, Issue 7218
The variant call format and VCFtools
journal, June 2011
- Danecek, P.; Auton, A.; Abecasis, G.
- Bioinformatics, Vol. 27, Issue 15
High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus
journal, January 2015
- Muchero, Wellington; Guo, Jianjun; DiFazio, Stephen P.
- BMC Genomics, Vol. 16, Issue 1
Protein structure prediction on the Web: a case study using the Phyre server
journal, February 2009
- Kelley, Lawrence A.; Sternberg, Michael J. E.
- Nature Protocols, Vol. 4, Issue 3
Robust relationship inference in genome-wide association studies
journal, October 2010
- Manichaikul, Ani; Mychaleckyj, Josyf C.; Rich, Stephen S.
- Bioinformatics, Vol. 26, Issue 22
Quantifying single nucleotide variant detection sensitivity in exome sequencing
journal, June 2013
- Meynert, Alison M.; Bicknell, Louise S.; Hurles, Matthew E.
- BMC Bioinformatics, Vol. 14, Issue 1
Association genetics of chemical wood properties in black poplar ( Populus nigra )
journal, November 2012
- Guerra, Fernando P.; Wegrzyn, Jill L.; Sykes, Robert
- New Phytologist, Vol. 197, Issue 1
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w
journal, April 2012
- Cingolani, Pablo; Platts, Adrian; Wang, Le Lily
- Fly, Vol. 6, Issue 2
pophelper : an R package and web app to analyse and visualize population structure
journal, February 2016
- Francis, R. M.
- Molecular Ecology Resources, Vol. 17, Issue 1
FAST-TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis): INTEGRATING QTL MAPPING AND GENOME SCANS
journal, December 2004
- Rogers, S. M.; Bernatchez, L.
- Molecular Ecology, Vol. 14, Issue 2
Theoretical Basis of the Beavis Effect
journal, December 2003
- Xu, Shizhong
- Genetics, Vol. 165, Issue 4
Ancestry deconvolution and partial polygenic score can improve susceptibility predictions in recently admixed individuals
journal, April 2020
- Marnetto, Davide; Pärna, Katri; Läll, Kristi
- Nature Communications, Vol. 11, Issue 1
Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland
journal, April 2020
- Furtwängler, Anja; Rohrlach, A. B.; Lamnidis, Thiseas C.
- Nature Communications, Vol. 11, Issue 1
Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.)
journal, December 2019
- Talavera, Alicia; Soorni, Aboozar; Bombarely, Aureliano
- Scientific Reports, Vol. 9, Issue 1
Two Sides of a Coin: a Zika Virus Mutation Selected in Pregnant Rhesus Macaques Promotes Fetal Infection in Mice but at a Cost of Reduced Fitness in Nonpregnant Macaques and Diminished Transmissibility by Vectors
journal, September 2020
- Lemos, Danilo; Stuart, Jackson B.; Louie, William
- Journal of Virology, Vol. 94, Issue 24
FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy
journal, March 2021
- Ferraro Petrillo, Umberto; Palini, Francesco; Cattaneo, Giuseppe
- BMC Bioinformatics, Vol. 22, Issue 1
Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
text, January 2014
- Baes, Christine F.; Dolezal, Marlies A.; Koltes, James E.
- BioMed Central
Rare-Variant Association Testing for Sequencing Data with the Sequence Kernel Association Test
text, January 2011
- Seunggeun, Lee,; Tianxi, Cai,; Xihong, Lin,
- The University of North Carolina at Chapel Hill University Libraries
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
text, January 2012
- Li, Heng
- arXiv
MOSAIK: A hash-based algorithm for accurate next-generation sequencing read mapping
text, January 2013
- Lee, Wan-Ping; Stromberg, Michael; Ward, Alistair
- arXiv
Works referencing / citing this record:
275 years of forestry meets genomics in Pinus sylvestris
journal, June 2019
- Pyhäjärvi, Tanja; Kujala, Sonja T.; Savolainen, Outi
- Evolutionary Applications, Vol. 13, Issue 1
Genomic architecture of complex traits in loblolly pine
journal, November 2018
- De La Torre, Amanda R.; Puiu, Daniela; Crepeau, Marc W.
- New Phytologist, Vol. 221, Issue 4
Population genomics of the eastern cottonwood ( Populus deltoides )
journal, October 2017
- Fahrenkrog, Annette M.; Neves, Leandro G.; Resende, Márcio F. R.
- Ecology and Evolution, Vol. 7, Issue 22
Genome Wide Associations of Growth, Phenology, and Plasticity Traits in Willow [Salix viminalis (L.)]
journal, June 2019
- Hallingbäck, Henrik R.; Berlin, Sofia; Nordh, Nils-Erik
- Frontiers in Plant Science, Vol. 10
QTL Mapping of Wood FT-IR Chemotypes Shows Promise for Improving Biofuel Potential in Short Rotation Coppice Willow (Salix spp.)
journal, March 2018
- Pawar, Prashant Mohan-Anupama; Schnürer, Anna; Mellerowicz, Ewa J.
- BioEnergy Research, Vol. 11, Issue 2
Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra
journal, December 2018
- Rogier, Odile; Chateigner, Aurélien; Amanzougarene, Souhila
- BMC Genomics, Vol. 19, Issue 1
Joint linkage and association mapping of complex traits in shrub willow (Salix purpurea L.)
journal, April 2019
- Carlson, Craig H.; Gouker, Fred E.; Crowell, Chase R.
- Annals of Botany, Vol. 124, Issue 4
Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa
journal, November 2019
- Guerra, Fernando P.; Suren, Haktan; Holliday, Jason
- BMC Genomics, Vol. 20, Issue 1
Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar
journal, October 2018
- Clifton-Brown, John; Harfouche, Antoine; Casler, Michael D.
- GCB Bioenergy, Vol. 11, Issue 1
Impact of RAV1-engineering on poplar biomass production: a short-rotation coppice field trial
journal, May 2017
- Moreno-Cortés, Alicia; Ramos-Sánchez, José Manuel; Hernández-Verdeja, Tamara
- Biotechnology for Biofuels, Vol. 10, Issue 1
Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur
journal, November 2018
- Lu, Nan; Mei, Fang; Wang, Zhi
- BMC Genetics, Vol. 19, Issue 1
Going with the flow: Intraspecific variation may act as a natural ally to counterbalance the impacts of global change for the riparian species Populus deltoides
journal, June 2019
- Godbout, Julie; Gros-Louis, Marie‐Claude; Lamothe, Manuel
- Evolutionary Applications, Vol. 13, Issue 1
Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus
journal, July 2017
- Müller, Bárbara S. F.; Neves, Leandro G.; de Almeida Filho, Janeo E.
- BMC Genomics, Vol. 18, Issue 1
Hardwood Tree Genomics: Unlocking Woody Plant Biology
journal, December 2018
- Tuskan, Gerald A.; Groover, Andrew T.; Schmutz, Jeremy
- Frontiers in Plant Science, Vol. 9
Genome-Wide Association Studies to Improve Wood Properties: Challenges and Prospects
journal, December 2018
- Du, Qingzhang; Lu, Wenjie; Quan, Mingyang
- Frontiers in Plant Science, Vol. 9
Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra†
journal, May 2017
- Wildhagen, Henning; Paul, Shanty; Allwright, Mike
- Tree Physiology, Vol. 38, Issue 3
Identification of QTLs for high grain yield and component traits in New Plant Types of rice
journal, January 2020
- Donde, Ravindra; Mohapatra, S.; Baksh, S. Y.
- PLOS ONE
Independent and Joint‐ GWAS for growth traits in Eucalyptus by assembling genome‐wide data for 3373 individuals across four breeding populations
journal, September 2018
- Müller, Bárbara S. F.; de Almeida Filho, Janeo E.; Lima, Bruno M.
- New Phytologist, Vol. 221, Issue 2
Genetic diversity and population structure of black cottonwood (Populus deltoides) revealed using simple sequence repeat markers
journal, January 2020
- Chen, Cun; Chu, Yanguang; Ding, Changjun
- BMC Genetics, Vol. 21, Issue 1
Genome-Wide Association Study of Major Agronomic Traits Related to Domestication in Peanut
journal, September 2017
- Zhang, Xingguo; Zhang, Jianhang; He, Xiaoyan
- Frontiers in Plant Science, Vol. 8
Identification of QTLs for high grain yield and component traits in new plant types of rice
journal, July 2020
- Donde, Ravindra; Mohapatra, Shibani; Baksh, S. K. Yasin
- PLOS ONE, Vol. 15, Issue 7
Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra†
journal, May 2017
- Wildhagen, Henning; Paul, Shanty; Allwright, Mike
- Tree Physiology, Vol. 38, Issue 3
Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur
journal, November 2018
- Lu, Nan; Mei, Fang; Wang, Zhi
- BMC Genetics, Vol. 19, Issue 1
Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa
journal, November 2019
- Guerra, Fernando P.; Suren, Haktan; Holliday, Jason
- BMC Genomics, Vol. 20, Issue 1
Genomic Diversity Evaluation of Populus trichocarpa Germplasm for Rare Variant Genetic Association Studies
journal, January 2020
- Piot, Anthony; Prunier, Julien; Isabel, Nathalie
- Frontiers in Genetics, Vol. 10
Genome-Wide Association Study of Major Agronomic Traits Related to Domestication in Peanut
journal, September 2017
- Zhang, Xingguo; Zhang, Jianhang; He, Xiaoyan
- Frontiers in Plant Science, Vol. 8
Hardwood Tree Genomics: Unlocking Woody Plant Biology
journal, December 2018
- Tuskan, Gerald A.; Groover, Andrew T.; Schmutz, Jeremy
- Frontiers in Plant Science, Vol. 9
Genome-Wide Association Studies to Improve Wood Properties: Challenges and Prospects
journal, December 2018
- Du, Qingzhang; Lu, Wenjie; Quan, Mingyang
- Frontiers in Plant Science, Vol. 9
Marginal Lands to Grow Novel Bio-Based Crops: A Plant Breeding Perspective
journal, March 2020
- Pancaldi, Francesco; Trindade, Luisa M.
- Frontiers in Plant Science, Vol. 11