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Title: Advances in targeted proteomics and applications to biomedical research

Authors:
 [1];  [1];  [1];  [1];  [1];  [1];  [1]
  1. Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland WA USA
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1400997
Grant/Contract Number:  
AC05-76RL0 1830
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
Proteomics
Additional Journal Information:
Journal Name: Proteomics Journal Volume: 16 Journal Issue: 15-16; Journal ID: ISSN 1615-9853
Publisher:
Wiley Blackwell (John Wiley & Sons)
Country of Publication:
Germany
Language:
English

Citation Formats

Shi, Tujin, Song, Ehwang, Nie, Song, Rodland, Karin D., Liu, Tao, Qian, Wei-Jun, and Smith, Richard D. Advances in targeted proteomics and applications to biomedical research. Germany: N. p., 2016. Web. doi:10.1002/pmic.201500449.
Shi, Tujin, Song, Ehwang, Nie, Song, Rodland, Karin D., Liu, Tao, Qian, Wei-Jun, & Smith, Richard D. Advances in targeted proteomics and applications to biomedical research. Germany. doi:10.1002/pmic.201500449.
Shi, Tujin, Song, Ehwang, Nie, Song, Rodland, Karin D., Liu, Tao, Qian, Wei-Jun, and Smith, Richard D. Sat . "Advances in targeted proteomics and applications to biomedical research". Germany. doi:10.1002/pmic.201500449.
@article{osti_1400997,
title = {Advances in targeted proteomics and applications to biomedical research},
author = {Shi, Tujin and Song, Ehwang and Nie, Song and Rodland, Karin D. and Liu, Tao and Qian, Wei-Jun and Smith, Richard D.},
abstractNote = {},
doi = {10.1002/pmic.201500449},
journal = {Proteomics},
number = 15-16,
volume = 16,
place = {Germany},
year = {2016},
month = {8}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1002/pmic.201500449

Citation Metrics:
Cited by: 26 works
Citation information provided by
Web of Science

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Targeted Proteomics-Driven Computational Modeling of Macrophage S1P Chemosensing
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Mass Spectrometry-Based Sequencing and SRM-Based Quantitation of Two Novel Vitellogenin Isoforms in the Leatherback Sea Turtle ( Dermochelys coriacea )
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Clustering and Filtering Tandem Mass Spectra Acquired in Data-Independent Mode
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Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics
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Multiplexed Targeted Mass Spectrometry-Based Assays for the Quantification of N-Linked Glycosite-Containing Peptides in Serum
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Simplified and Efficient Quantification of Low-abundance Proteins at Very High Multiplex via Targeted Mass Spectrometry
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Absolute Quantitation of Low Abundance Plasma APL1β peptides at Sub-fmol/mL Level by SRM/MRM without Immunoaffinity Enrichment
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Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes
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Advances in high-resolution quantitative proteomics: implications for clinical applications
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A sentinel protein assay for simultaneously quantifying cellular processes
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Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation
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Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum
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High-Throughput SISCAPA Quantitation of Peptides from Human Plasma Digests by Ultrafast, Liquid Chromatography-Free Mass Spectrometry
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Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer
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Increased Throughput of Proteomics Analysis by Multiplexing High-Resolution Tandem Mass Spectra
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Verification of a Parkinson’s Disease Protein Signature in T-Lymphocytes by Multiple Reaction Monitoring
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Screening protein isoforms predictive for cancer using immunoaffinity capture and fast LC-MS in PRM mode
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An improved quantitative mass spectrometry analysis of tumor specific mutant proteins at high sensitivity
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Experimental Evaluation and Optimization of Structures for Lossless Ion Manipulations for Ion Mobility Spectrometry with Time-of-Flight Mass Spectrometry
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Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury
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Accurate Quantification of Cardiovascular Biomarkers in Serum Using Protein Standard Absolute Quantification (PSAQ™) and Selected Reaction Monitoring
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Identification and Selected Reaction Monitoring (SRM) Quantification of Endocytosis Factors Associated with Numb
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Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system
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A Highly Sensitive Targeted Mass Spectrometric Assay for Quantification of AGR2 Protein in Human Urine and Serum
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The development of a peptide SRM-based tandem mass spectrometry assay for prenatal screening of Down syndrome
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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma
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mProphet: automated data processing and statistical validation for large-scale SRM experiments
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Quantification of Human Kallikrein-2 in Clinical Samples by Selected Reaction Monitoring
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From SOMAmer-Based Biomarker Discovery to Diagnostic and Clinical Applications: A SOMAmer-Based, Streamlined Multiplex Proteomic Assay
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Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins
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Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics
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Sequential Multiplexed Analyte Quantification Using Peptide Immunoaffinity Enrichment Coupled to Mass Spectrometry
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Long-Gradient Separations Coupled with Selected Reaction Monitoring for Highly Sensitive, Large Scale Targeted Protein Quantification in a Single Analysis
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Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry
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Open Source System for Analyzing, Validating, and Storing Protein Identification Data
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Dietary patterns and ethnicity are associated with distinct plasma proteomic groups
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Sequential Protein and Peptide Immunoaffinity Capture for Mass Spectrometry-Based Quantification of Total Human β-Nerve Growth Factor
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Multiplexed MRM with Internal Standards for Cerebrospinal Fluid Candidate Protein Biomarker Quantitation
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Epitope mapping and targeted quantitation of the cardiac biomarker troponin by SID-MRM mass spectrometry
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Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach
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Applications of targeted proteomics in systems biology and translational medicine
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Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues
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Mobility-Resolved Ion Selection in Uniform Drift Field Ion Mobility Spectrometry/Mass Spectrometry: Dynamic Switching in Structures for Lossless Ion Manipulations
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Genome-scale proteome quantification by DEEP SEQ mass spectrometry
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Verification of the Biomarker Candidates for Non-small-cell Lung Cancer Using a Targeted Proteomics Approach
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Mass Spectrometry–Based Proteomics and Network Biology
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Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry
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Large-Scale Targeted Proteomics Using Internal Standard Triggered-Parallel Reaction Monitoring (IS-PRM)
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Sensitive Targeted Quantification of ERK Phosphorylation Dynamics and Stoichiometry in Human Cells without Affinity Enrichment
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Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM)
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Clinical Pharmacokinetic Assessment of an Anti-MAdCAM Monoclonal Antibody Therapeutic by LC-MS/MS
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Signal Transduction Reaction Monitoring Deciphers Site-Specific PI3K-mTOR/MAPK Pathway Dynamics in Oncogene-Induced Senescence
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Detection of FGF15 in Plasma by Stable Isotope Standards and Capture by Anti-peptide Antibodies and Targeted Mass Spectrometry
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Multiplexed Parallel Reaction Monitoring Targeting Histone Modifications on the QExactive Mass Spectrometer
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