Microbial models with data‐driven parameters predict stronger soil carbon responses to climate change
Abstract
Abstract Long‐term carbon (C) cycle feedbacks to climate depend on the future dynamics of soil organic carbon ( SOC ). Current models show low predictive accuracy at simulating contemporary SOC pools, which can be improved through parameter estimation. However, major uncertainty remains in global soil responses to climate change, particularly uncertainty in how the activity of soil microbial communities will respond. To date, the role of microbes in SOC dynamics has been implicitly described by decay rate constants in most conventional global carbon cycle models. Explicitly including microbial biomass dynamics into C cycle model formulations has shown potential to improve model predictive performance when assessed against global SOC databases. This study aimed to data‐constrained parameters of two soil microbial models, evaluate the improvements in performance of those calibrated models in predicting contemporary carbon stocks, and compare the SOC responses to climate change and their uncertainties between microbial and conventional models. Microbial models with calibrated parameters explained 51% of variability in the observed total SOC , whereas a calibrated conventional model explained 41%. The microbial models, when forced with climate and soil carbon input predictions from the 5th Coupled Model Intercomparison Project ( CMIP 5), produced stronger soil C responses tomore »
- Authors:
-
- Department of Microbiology and Plant Biology University of Oklahoma Norman OK USA, Computational Science Laboratory Microsoft Research Cambridge UK
- Computational Science Laboratory Microsoft Research Cambridge UK
- Department of Microbiology and Plant Biology University of Oklahoma Norman OK USA, Center for Earth System Science Tsinghua University Beijing China
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1400893
- Resource Type:
- Publisher's Accepted Manuscript
- Journal Name:
- Global Change Biology
- Additional Journal Information:
- Journal Name: Global Change Biology Journal Volume: 21 Journal Issue: 6; Journal ID: ISSN 1354-1013
- Publisher:
- Wiley-Blackwell
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
Hararuk, Oleksandra, Smith, Matthew J., and Luo, Yiqi. Microbial models with data‐driven parameters predict stronger soil carbon responses to climate change. United Kingdom: N. p., 2015.
Web. doi:10.1111/gcb.12827.
Hararuk, Oleksandra, Smith, Matthew J., & Luo, Yiqi. Microbial models with data‐driven parameters predict stronger soil carbon responses to climate change. United Kingdom. https://doi.org/10.1111/gcb.12827
Hararuk, Oleksandra, Smith, Matthew J., and Luo, Yiqi. Fri .
"Microbial models with data‐driven parameters predict stronger soil carbon responses to climate change". United Kingdom. https://doi.org/10.1111/gcb.12827.
@article{osti_1400893,
title = {Microbial models with data‐driven parameters predict stronger soil carbon responses to climate change},
author = {Hararuk, Oleksandra and Smith, Matthew J. and Luo, Yiqi},
abstractNote = {Abstract Long‐term carbon (C) cycle feedbacks to climate depend on the future dynamics of soil organic carbon ( SOC ). Current models show low predictive accuracy at simulating contemporary SOC pools, which can be improved through parameter estimation. However, major uncertainty remains in global soil responses to climate change, particularly uncertainty in how the activity of soil microbial communities will respond. To date, the role of microbes in SOC dynamics has been implicitly described by decay rate constants in most conventional global carbon cycle models. Explicitly including microbial biomass dynamics into C cycle model formulations has shown potential to improve model predictive performance when assessed against global SOC databases. This study aimed to data‐constrained parameters of two soil microbial models, evaluate the improvements in performance of those calibrated models in predicting contemporary carbon stocks, and compare the SOC responses to climate change and their uncertainties between microbial and conventional models. Microbial models with calibrated parameters explained 51% of variability in the observed total SOC , whereas a calibrated conventional model explained 41%. The microbial models, when forced with climate and soil carbon input predictions from the 5th Coupled Model Intercomparison Project ( CMIP 5), produced stronger soil C responses to 95 years of climate change than any of the 11 CMIP 5 models. The calibrated microbial models predicted between 8% (2‐pool model) and 11% (4‐pool model) soil C losses compared with CMIP 5 model projections which ranged from a 7% loss to a 22.6% gain. Lastly, we observed unrealistic oscillatory SOC dynamics in the 2‐pool microbial model. The 4‐pool model also produced oscillations, but they were less prominent and could be avoided, depending on the parameter values.},
doi = {10.1111/gcb.12827},
journal = {Global Change Biology},
number = 6,
volume = 21,
place = {United Kingdom},
year = {Fri Mar 06 00:00:00 EST 2015},
month = {Fri Mar 06 00:00:00 EST 2015}
}
https://doi.org/10.1111/gcb.12827
Web of Science
Works referenced in this record:
Sustainability of terrestrial carbon sequestration: A case study in Duke Forest with inversion approach: SUSTAINABILITY OF TERRESTRIAL CARBON SEQUESTRATION
journal, March 2003
- Luo, Yiqi; White, Luther W.; Canadell, Josep G.
- Global Biogeochemical Cycles, Vol. 17, Issue 1
Temperature sensitivity of soil respiration in different ecosystems in China
journal, May 2009
- Peng, Shushi; Piao, Shilong; Wang, Tao
- Soil Biology and Biochemistry, Vol. 41, Issue 5
Does a General Temperature-Dependent Q10 Model of Soil Respiration Exist at Biome and Global Scale?
journal, November 2005
- Chen, Hua; Tian, Han-Qin
- Journal of Integrative Plant Biology, Vol. 47, Issue 11
Monte Carlo analysis of inverse problems
journal, April 2002
- Mosegaard, Klaus; Sambridge, Malcolm
- Inverse Problems, Vol. 18, Issue 3
Patterns of substrate utilization during long-term incubations at different temperatures
journal, November 2008
- Steinweg, J. Megan; Plante, Alain F.; Conant, Richard T.
- Soil Biology and Biochemistry, Vol. 40, Issue 11
The Global Carbon Cycle: A Test of Our Knowledge of Earth as a System
journal, October 2000
- Falkowski, P.
- Science, Vol. 290, Issue 5490
Inference from Iterative Simulation Using Multiple Sequences
journal, November 1992
- Gelman, Andrew; Rubin, Donald B.
- Statistical Science, Vol. 7, Issue 4
Altered soil microbial community at elevated CO2 leads to loss of soil carbon
journal, March 2007
- Carney, K. M.; Hungate, B. A.; Drake, B. G.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 12
Nonsteady state carbon sequestration in forest ecosystems of China estimated by data assimilation: C SINK ESTIMATED BY DATA ASSIMILATION
journal, October 2013
- Zhou, Tao; Shi, Peijun; Jia, Gensuo
- Journal of Geophysical Research: Biogeosciences, Vol. 118, Issue 4
An Overview of CMIP5 and the Experiment Design
journal, April 2012
- Taylor, Karl E.; Stouffer, Ronald J.; Meehl, Gerald A.
- Bulletin of the American Meteorological Society, Vol. 93, Issue 4
Improvements to the Community Land Model and their impact on the hydrological cycle: COMMUNITY LAND MODEL HYDROLOGY
journal, March 2008
- Oleson, K. W.; Niu, G. -Y.; Yang, Z. -L.
- Journal of Geophysical Research: Biogeosciences, Vol. 113, Issue G1
The global-scale temperature and moisture dependencies of soil organic carbon decomposition: an analysis using a mechanistic decomposition model
journal, June 2006
- Ise, Takeshi; Moorcroft, Paul R.
- Biogeochemistry, Vol. 80, Issue 3
Similar response of labile and resistant soil organic matter pools to changes in temperature
journal, January 2005
- Fang, Changming; Smith, Pete; Moncrieff, John B.
- Nature, Vol. 433, Issue 7021
Controls on long-term root and leaf litter decomposition in neotropical forests
journal, May 2009
- Cusack, Daniela F.; Chou, Wendy W.; Yang, Wendy H.
- Global Change Biology, Vol. 15, Issue 5
Simple spatially distributed model of the global carbon cycle and its dynamic properties
journal, September 2002
- Svirezhev, Yuri M.
- Ecological Modelling, Vol. 155, Issue 1
A semi-analytical solution to accelerate spin-up of a coupled carbon and nitrogen land model to steady state
journal, January 2012
- Xia, J. Y.; Luo, Y. Q.; Wang, Y. -P.
- Geoscientific Model Development, Vol. 5, Issue 5
Nitrogen and Lignin Content as Predictors of Litter Decay Rates: A Microcosm Test
journal, February 1989
- Taylor, Barry R.; Parkinson, Dennis; Parsons, William F. J.
- Ecology, Vol. 70, Issue 1
Microbial enzymatic activity and thermal effect in a tropical soil treated with organic materials
journal, December 2008
- Cenciani, Karina; Freitas, Sueli dos Santos; Critter, Silvana Auxiliadora Missola
- Scientia Agricola, Vol. 65, Issue 6
Review of mechanisms and quantification of priming effects
journal, October 2000
- Kuzyakov, Y.; Friedel, J. K.; Stahr, K.
- Soil Biology and Biochemistry, Vol. 32, Issue 11-12
A Large and Persistent Carbon Sink in the World's Forests
journal, July 2011
- Pan, Y.; Birdsey, R. A.; Fang, J.
- Science, Vol. 333, Issue 6045
Soil organic matter turnover as a function of the soil clay content: consequences for model applications
journal, June 2004
- Müller, T.; Höper, H.
- Soil Biology and Biochemistry, Vol. 36, Issue 6
Simulation of Global Land Surface Conditions from 1948 to 2004. Part I: Forcing Data and Evaluations
journal, October 2006
- Qian, Taotao; Dai, Aiguo; Trenberth, Kevin E.
- Journal of Hydrometeorology, Vol. 7, Issue 5
Substrate limitations to microbial activity in taiga forest floors
journal, February 2001
- Vance, E. D.; Chapin III, F. S.
- Soil Biology and Biochemistry, Vol. 33, Issue 2
The dependence of soil CO2 efflux on temperature
journal, February 2001
- Fang, C.; Moncrieff, J. B.
- Soil Biology and Biochemistry, Vol. 33, Issue 2
Quality or decomposer efficiency – which is most important in the temperature response of litter decomposition? A modelling study using the GLUE methodology
journal, January 2011
- Wetterstedt, J. Å. M.; Ågren, G. I.
- Biogeosciences, Vol. 8, Issue 2
A global analysis of soil microbial biomass carbon, nitrogen and phosphorus in terrestrial ecosystems: Global soil microbial biomass C, N and P
journal, December 2012
- Xu, Xiaofeng; Thornton, Peter E.; Post, Wilfred M.
- Global Ecology and Biogeography, Vol. 22, Issue 6
Global soil carbon projections are improved by modelling microbial processes
journal, July 2013
- Wieder, William R.; Bonan, Gordon B.; Allison, Steven D.
- Nature Climate Change, Vol. 3, Issue 10
A comparative study of Markov chain Monte Carlo methods for conceptual rainfall-runoff modeling: MCMC METHODS FOR HYDROLOGIC MODELING
journal, February 2004
- Marshall, Lucy; Nott, David; Sharma, Ashish
- Water Resources Research, Vol. 40, Issue 2
Changes in soil organic carbon storage predicted by Earth system models during the 21st century
journal, January 2013
- Todd-Brown, K. E. O.; Randerson, J. T.; Hopkins, F.
- Biogeosciences Discussions, Vol. 10, Issue 12
Decomposition of rice straw and microbial carbon use efficiency under different soil temperatures and moistures
journal, October 2000
- Devêvre, Olivier C.; Horwáth, William R.
- Soil Biology and Biochemistry, Vol. 32, Issue 11-12
The temperature response of soil microbial efficiency and its feedback to climate
journal, January 2013
- Frey, Serita D.; Lee, Juhwan; Melillo, Jerry M.
- Nature Climate Change, Vol. 3, Issue 4
Is resistant soil organic matter more sensitive to temperature than the labile organic matter?
journal, January 2006
- Fang, C.; Smith, P.; Smith, J. U.
- Biogeosciences, Vol. 3, Issue 1
Temperature-compensated oscillations in respiration and cellular protein content in synchronous cultures of Acanthamoeba castellanii.
journal, June 1982
- Lloyd, D.; Edwards, S. W.; Fry, J. C.
- Proceedings of the National Academy of Sciences, Vol. 79, Issue 12
Accelerated microbial turnover but constant growth efficiency with warming in soil
journal, September 2014
- Hagerty, Shannon B.; van Groenigen, Kees Jan; Allison, Steven D.
- Nature Climate Change, Vol. 4, Issue 10
Evaluation and improvement of a global land model against soil carbon data using a Bayesian Markov chain Monte Carlo method: Calibration of a carbon cycle model
journal, March 2014
- Hararuk, Oleksandra; Xia, Jianyang; Luo, Yiqi
- Journal of Geophysical Research: Biogeosciences, Vol. 119, Issue 3
Oscillatory behavior of two nonlinear microbial models of soil carbon decomposition
journal, January 2013
- Wang, Y. P.; Chen, B. C.; Wieder, W. R.
- Biogeosciences Discussions, Vol. 10, Issue 12
The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: a cross-latitudinal study
journal, January 2012
- German, Donovan P.; Marcelo, Kathleen R. B.; Stone, Madeleine M.
- Global Change Biology, Vol. 18, Issue 4
Acclimatization of soil respiration to warming in a tall grass prairie
journal, October 2001
- Luo, Yiqi; Wan, Shiqiang; Hui, Dafeng
- Nature, Vol. 413, Issue 6856
Carbon input to soil may decrease soil carbon content: Carbon input in soil carbon sequestration
journal, March 2004
- Fontaine, Sébastien; Bardoux, Gérard; Abbadie, Luc
- Ecology Letters, Vol. 7, Issue 4
Representing a new MODIS consistent land surface in the Community Land Model (CLM 3.0)
journal, January 2007
- Lawrence, Peter J.; Chase, Thomas N.
- Journal of Geophysical Research, Vol. 112, Issue G1
Causes of variation in soil carbon simulations from CMIP5 Earth system models and comparison with observations
journal, January 2013
- Todd-Brown, K. E. O.; Randerson, J. T.; Post, W. M.
- Biogeosciences, Vol. 10, Issue 3
Planktonic ecosystem models: perplexing parameterizations and a failure to fail
journal, August 2009
- Franks, P. J. S.
- Journal of Plankton Research, Vol. 31, Issue 11
Effects of three years of soil warming and shading on the rate of soil respiration: substrate availability and not thermal acclimation mediates observed response
journal, August 2007
- Hartley, Iain P.; Heinemeyer, Andreas; Ineson, Phil
- Global Change Biology, Vol. 13, Issue 8
The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model
journal, April 2003
- Schimel, J.
- Soil Biology and Biochemistry, Vol. 35, Issue 4
Carbon sequestration in the agricultural soils of Europe
journal, September 2004
- Freibauer, Annette; Rounsevell, Mark D. A.; Smith, Pete
- Geoderma, Vol. 122, Issue 1
Observations and modeling of biomass and soil organic matter dynamics for the grassland biome worldwide
journal, December 1993
- Parton, W. J.; Scurlock, J. M. O.; Ojima, D. S.
- Global Biogeochemical Cycles, Vol. 7, Issue 4
Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses
journal, January 2013
- Wang, Gangsheng; Post, Wilfred M.; Mayes, Melanie A.
- Ecological Applications, Vol. 23, Issue 1
Soil-carbon response to warming dependent on microbial physiology
journal, April 2010
- Allison, Steven D.; Wallenstein, Matthew D.; Bradford, Mark A.
- Nature Geoscience, Vol. 3, Issue 5
Testing the performance of a dynamic global ecosystem model: Water balance, carbon balance, and vegetation structure
journal, September 2000
- Kucharik, Christopher J.; Foley, Jonathan A.; Delire, Christine
- Global Biogeochemical Cycles, Vol. 14, Issue 3
Relationships of soil respiration to microbial biomass, substrate availability and clay content
journal, February 2003
- Wang, W. J.; Dalal, R. C.; Moody, P. W.
- Soil Biology and Biochemistry, Vol. 35, Issue 2
Atmospheric Carbon Dioxide Variability in the Community Earth System Model: Evaluation and Transient Dynamics during the Twentieth and Twenty-First Centuries
journal, July 2013
- Keppel-Aleks, Gretchen; Randerson, James T.; Lindsay, Keith
- Journal of Climate, Vol. 26, Issue 13, p. 4447-4475
An Adaptive Metropolis Algorithm
journal, April 2001
- Haario, Heikki; Saksman, Eero; Tamminen, Johanna
- Bernoulli, Vol. 7, Issue 2
Maximum impacts of future reforestation or deforestation on atmospheric CO2
journal, November 2002
- House, Joanna I.; Colin Prentice, I.; Le Quere, Corinne
- Global Change Biology, Vol. 8, Issue 11
Probabilistic inversion of a terrestrial ecosystem model: Analysis of uncertainty in parameter estimation and model prediction: PROBABILISTIC INVERSION OF TERRESTRIAL ECOSYSTEM
journal, May 2006
- Xu, Tao; White, Luther; Hui, Dafeng
- Global Biogeochemical Cycles, Vol. 20, Issue 2
Optimal nitrogen allocation controls tree responses to elevated CO 2
journal, June 2007
- Franklin, Oskar
- New Phytologist, Vol. 174, Issue 4
The climate dependence of the terrestrial carbon cycle, including parameter and structural uncertainties
journal, January 2013
- Smith, M. J.; Purves, D. W.; Vanderwel, M. C.
- Biogeosciences, Vol. 10, Issue 1
Evaluating the carbon cycle of a coupled atmosphere-biosphere model: CARBON CYCLE OF COUPLED ATMOSPHERE-BIOSPHERE MODEL
journal, January 2003
- Delire, Christine; Foley, Jonathan A.; Thompson, Starfley
- Global Biogeochemical Cycles, Vol. 17, Issue 1
Predictability of the terrestrial carbon cycle
journal, December 2014
- Luo, Yiqi; Keenan, Trevor F.; Smith, Matthew
- Global Change Biology, Vol. 21, Issue 5
Carbon use efficiency of microbial communities: stoichiometry, methodology and modelling
journal, April 2013
- Sinsabaugh, Robert L.; Manzoni, Stefano; Moorhead, Daryl L.
- Ecology Letters, Vol. 16, Issue 7
Drought-Induced Reduction in Global Terrestrial Net Primary Production from 2000 Through 2009
journal, August 2010
- Zhao, M.; Running, S. W.
- Science, Vol. 329, Issue 5994
Global pattern of temperature sensitivity of soil heterotrophic respiration (Q 10 ) and its implications for carbon-climate feedback : GLOBAL PATTERN OF TEMPERATURE SENSITIVITY
journal, May 2009
- Zhou, Tao; Shi, Peijun; Hui, Dafeng
- Journal of Geophysical Research: Biogeosciences, Vol. 114, Issue G2
Ecoenzymatic stoichiometry of microbial nutrient acquisition in tropical soils
journal, April 2013
- Waring, Bonnie Grace; Weintraub, Samantha Rose; Sinsabaugh, Robert L.
- Biogeochemistry, Vol. 117, Issue 1