Solvent Mediated Interactions in the Structure of the Nucleosome Core Particle at 1.9Å Resolution
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journal
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June 2002 |
Revisiting the finite temperature string method for the calculation of reaction tubes and free energies
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journal
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May 2009 |
Human diseases with underlying defects in chromatin structure and modification
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journal
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October 2001 |
Dynamics of Nucleosome Invasion by DNA Binding Proteins
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journal
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August 2011 |
A genomic code for nucleosome positioning
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journal
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July 2006 |
Effect of force on mononucleosomal dynamics
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journal
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October 2006 |
Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome
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journal
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March 2006 |
Telomeric Nucleosomes Are Intrinsically Mobile
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June 2007 |
Using DNA mechanics to predict in vitro nucleosome positions and formation energies
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journal
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June 2009 |
Multidimensional free-energy calculations using the weighted histogram analysis method
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November 1995 |
Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals.
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February 1996 |
Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
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July 2009 |
Rigid-body molecular dynamics of DNA inside a nucleosome
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March 2013 |
The main role of the sequence-dependent DNA elasticity in determining the free energy of nucleosome formation on telomeric DNAs
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January 2000 |
Mobility of positioned nucleosomes on 5 S rDNA
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July 1991 |
Nucleosome sliding mechanisms: new twists in a looped history
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September 2013 |
An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization
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journal
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October 2013 |
Frustration, specific sequence dependence, and nonlinearity in large-amplitude fluctuations of allosteric proteins
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February 2011 |
In vitro low propensity to form nucleosomes of four telomeric sequences
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January 1997 |
Nucleosomes in Solution Exist as a Mixture of Twist-defect States
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January 2005 |
Mechanisms of ATP-dependent nucleosome sliding
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February 2010 |
The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes
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December 2009 |
Dynamics of nucleosome remodelling by individual ACF complexes
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December 2009 |
Positioning and stability of nucleosomes on MMTV 3′LTR sequences
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journal
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January 1998 |
ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps
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journal
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January 2013 |
Nucleosome structural studies
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journal
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February 2011 |
DNA Shape Dominates Sequence Affinity in Nucleosome Formation
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journal
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October 2014 |
The ATPase domain of ISWI is an autonomous nucleosome remodeling machine
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journal
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December 2012 |
Coarse-Grained Ions for Nucleic Acid Modeling
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journal
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October 2015 |
High-resolution dynamic mapping of histone-DNA interactions in a nucleosome
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journal
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January 2009 |
Rapid spontaneous accessibility of nucleosomal DNA
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journal
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December 2004 |
Crystal structure of the nucleosome core particle at 2.8 Å resolution
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journal
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September 1997 |
Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome
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journal
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May 2010 |
Histone H4 tail mediates allosteric regulation of nucleosome remodelling by linker DNA
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journal
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June 2014 |
Coarse-grained modeling of DNA curvature
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journal
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October 2014 |
Defining the axis of a helix
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journal
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January 1989 |
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
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journal
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February 1998 |
Are nucleosome positions in vivo primarily determined by histone–DNA sequence preferences?
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journal
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November 2009 |
Blocking Transcription Through a Nucleosome with Synthetic DNA Ligands
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journal
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August 2002 |
The DNA-encoded nucleosome organization of a eukaryotic genome
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journal
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December 2008 |
Structure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics
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journal
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April 2016 |
ACF, an ISWI-Containing and ATP-Utilizing Chromatin Assembly and Remodeling Factor
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journal
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July 1997 |
The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing
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November 2006 |
Chromatin remodeling by DNA bending, not twisting
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journal
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January 2005 |
The presence of nucleosomes on a DNA template prevents initiation by RNA polymerase II in vitro
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journal
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April 1986 |
Covalent modifications of histones during development and disease pathogenesis
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journal
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November 2007 |
Dynamic Regulation of Nucleosome Positioning in the Human Genome
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journal
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March 2008 |
Disparity in the DNA translocase domains of SWI/SNF and ISW2
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journal
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January 2012 |
Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones
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journal
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April 1987 |
Nucleosome dynamics: Sequence matters
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journal
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June 2016 |
Determinants of nucleosome positioning
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journal
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March 2013 |
Chromatin Dynamics: Nucleosomes go Mobile through Twist Defects
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journal
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October 2003 |
Polymer Reptation and Nucleosome Repositioning
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journal
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May 2001 |
Umbrella sampling: Umbrella sampling
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journal
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May 2011 |
Artificial nucleosome positioning sequences.
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journal
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October 1989 |
Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter.
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journal
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February 1991 |
The structure of DNA in the nucleosome core
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journal
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May 2003 |
A Mesoscale Model of DNA and Its Renaturation
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journal
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March 2009 |
ISWI Remodelling of Physiological Chromatin Fibres Acetylated at Lysine 16 of Histone H4
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journal
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February 2014 |
Simplified and improved string method for computing the minimum energy paths in barrier-crossing events
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journal
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April 2007 |
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
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journal
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April 1999 |
Crystal Structures of Nucleosome Core Particles in Complex with Minor Groove DNA-binding Ligands
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journal
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February 2003 |
The human telomere terminal transferase enzyme is a ribonucleoprotein that synthesizes TTAGGG repeats
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journal
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November 1989 |
Determinants of nucleosome organization in primary human cells
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journal
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May 2011 |
Nucleosome Repositioning via Loop Formation
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journal
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May 2003 |
Chromatin remodelling at promoters suppresses antisense transcription
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journal
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December 2007 |
A coarse grain model for DNA
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journal
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February 2007 |
The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes: Unique role of RSC in nucleosome positioning
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journal
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February 2011 |
Analysis of Nucleosome Repositioning by Yeast ISWI and Chd1 Chromatin Remodeling Complexes
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journal
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April 2006 |
A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning
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journal
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August 2007 |
Nucleosome hopping and sliding kinetics determined from dynamics of single chromatin fibers in Xenopus egg extracts
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journal
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August 2007 |
A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes.
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journal
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September 1988 |
Tension-Dependent Free Energies of Nucleosome Unwrapping
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journal
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August 2016 |
Chromatin Remodeling In Vivo
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journal
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November 2003 |
A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling
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journal
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July 2005 |
Mobile nucleosomes--a general behavior.
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journal
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August 1992 |
Transcription factor access is mediated by accurately positioned nucleosomes on the mouse mammary tumor virus promoter
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journal
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February 1991 |
Polymer Reptation and Nucleosome Repositioning
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text
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January 2001 |
The DNA-encoded nucleosome organization of a eukaryotic genome
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text
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January 2009 |
Coarse-grained Modeling of DNA Curvature
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text
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January 2014 |
Tension-dependent Free Energies of Nucleosome Unwrapping
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text
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January 2016 |
Polymer reptation and nucleosome repositioning
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text
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January 2001 |
Nucleosome repositioning via loop formation
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text
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January 2002 |