Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks
Abstract
Contaminant discharge from fractured bedrock formations remains a remediation challenge. Here, we applied an integrated approach to assess the natural attenuation potential of sediment that forms the transition zone between upwelling groundwater from a chlorinated solvent-contaminated fractured bedrock aquifer and the receiving surface water. In situ measurements demonstrated that reductive dechlorination in the sediment attenuated chlorinated compounds before reaching the water column. Microcosms established with creek sediment or in situ incubated Bio-Sep beads degraded C1-C3 chlorinated solvents to less-chlorinated or innocuous products. Quantitative PCR and 16S rRNA gene amplicon sequencing revealed the abundance and spatial distribution of known dechlorinator biomarker genes within the creek sediment and demonstrated that multiple dechlorinator populations degrading chlorinatedC1-C3 alkanes and alkenes co-inhabit the sediment. Phylogenetic classification of bacterial and archaeal sequences indicated a relatively uniform distribution over spatial (300 m horizontally) scale, but Dehalococcoides and Dehalobacter were more abundant in deeper sediment, where 5.7 ± 0.4 × 105 and 5.4 ± 0.9 × 106 16S rRNA gene copies per g of sediment, respectively, were measured. The microbiological and hydrogeological characterization demonstrated that microbial processes at the fractured bedrock-sediment interface were crucial for preventing contaminants reaching the water column, emphasizing the relevance of this critical zonemore »
- Authors:
-
- Univ. of Tennessee, Knoxville, TN (United States). Dept. of Civil and Environmental Engineering, Center for Environmental Biotechnology; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division and Joint Inst. for Biological Sciences (JIBS)
- Univ. of Tennessee, Knoxville, TN (United States). Center for Environmental Biotechnology; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division and Joint Inst. for Biological Sciences (JIBS); Chinese Academy of Sciences, Shenyang (China). Key Lab. of Pollution Ecology and Environmental Engineering, Inst. of Applied Ecology; Univ. of Tennessee, Knoxville, TN (United States). Dept. of Microbiology
- Univ. of Massachusetts, Amherst, MA (United States). Dept. of Microbiology
- Geosyntec Consultants, Knoxville, TN (United States)
- Univ. of Tennessee, Knoxville, TN (United States). Dept. of Civil and Environmental Engineering, Center for Environmental Biotechnology; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division and Joint Inst. for Biological Sciences (JIBS); Univ. of Tennessee, Knoxville, TN (United States). Dept. of Microbiology
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE; USDoD
- OSTI Identifier:
- 1399394
- Grant/Contract Number:
- AC05-00OR22725
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Environmental Science and Technology
- Additional Journal Information:
- Journal Volume: 51; Journal Issue: 9; Journal ID: ISSN 0013-936X
- Publisher:
- American Chemical Society (ACS)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 58 GEOSCIENCES
Citation Formats
Şimşir, Burcu, Yan, Jun, Im, Jeongdae, Graves, Duane, and Löffler, Frank E. Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks. United States: N. p., 2017.
Web. doi:10.1021/acs.est.6b05554.
Şimşir, Burcu, Yan, Jun, Im, Jeongdae, Graves, Duane, & Löffler, Frank E. Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks. United States. https://doi.org/10.1021/acs.est.6b05554
Şimşir, Burcu, Yan, Jun, Im, Jeongdae, Graves, Duane, and Löffler, Frank E. Wed .
"Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks". United States. https://doi.org/10.1021/acs.est.6b05554. https://www.osti.gov/servlets/purl/1399394.
@article{osti_1399394,
title = {Natural Attenuation in Streambed Sediment Receiving Chlorinated Solvents from Underlying Fracture Networks},
author = {Şimşir, Burcu and Yan, Jun and Im, Jeongdae and Graves, Duane and Löffler, Frank E.},
abstractNote = {Contaminant discharge from fractured bedrock formations remains a remediation challenge. Here, we applied an integrated approach to assess the natural attenuation potential of sediment that forms the transition zone between upwelling groundwater from a chlorinated solvent-contaminated fractured bedrock aquifer and the receiving surface water. In situ measurements demonstrated that reductive dechlorination in the sediment attenuated chlorinated compounds before reaching the water column. Microcosms established with creek sediment or in situ incubated Bio-Sep beads degraded C1-C3 chlorinated solvents to less-chlorinated or innocuous products. Quantitative PCR and 16S rRNA gene amplicon sequencing revealed the abundance and spatial distribution of known dechlorinator biomarker genes within the creek sediment and demonstrated that multiple dechlorinator populations degrading chlorinatedC1-C3 alkanes and alkenes co-inhabit the sediment. Phylogenetic classification of bacterial and archaeal sequences indicated a relatively uniform distribution over spatial (300 m horizontally) scale, but Dehalococcoides and Dehalobacter were more abundant in deeper sediment, where 5.7 ± 0.4 × 105 and 5.4 ± 0.9 × 106 16S rRNA gene copies per g of sediment, respectively, were measured. The microbiological and hydrogeological characterization demonstrated that microbial processes at the fractured bedrock-sediment interface were crucial for preventing contaminants reaching the water column, emphasizing the relevance of this critical zone environment for contaminant attenuation.},
doi = {10.1021/acs.est.6b05554},
journal = {Environmental Science and Technology},
number = 9,
volume = 51,
place = {United States},
year = {Wed Mar 22 00:00:00 EDT 2017},
month = {Wed Mar 22 00:00:00 EDT 2017}
}
Web of Science
Figures / Tables:
Works referenced in this record:
The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations : The genome of
journal, October 2012
- Spang, Anja; Poehlein, Anja; Offre, Pierre
- Environmental Microbiology, Vol. 14, Issue 12
Characterization of the methanotrophic bacterial community present in a trichloroethylene-contaminated subsurface groundwater site
journal, August 1993
- Bowman, J. P.; Jiménez, L.; Rosario, I.
- Applied and Environmental Microbiology, Vol. 59, Issue 8
Assessing BTEX Biodegradation Potential at a Refinery Using Molecular Biological Tools
journal, November 2013
- Key, Katherine C.; Sublette, Kerry L.; Johannes, Tyler W.
- Groundwater Monitoring & Remediation, Vol. 34, Issue 1
A device for measuring seepage flux in lakes and estuaries1
journal, January 1977
- Lee, David Robert
- Limnology and Oceanography, Vol. 22, Issue 1
Correlation of Dehalococcoides 16S rRNA and Chloroethene-Reductive Dehalogenase Genes with Geochemical Conditions in Chloroethene-Contaminated Groundwater
journal, February 2010
- van der Zaan, Bas; Hannes, Fredericke; Hoekstra, Nanne
- Applied and Environmental Microbiology, Vol. 76, Issue 3
Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1T)
journal, March 2012
- Han, Cliff; Kotsyurbenko, Oleg; Chertkov, Olga
- Standards in Genomic Sciences, Vol. 6, Issue 1
Evaluating the fate of chlorinated ethenes in streambed sediments by combining stable isotope, geochemical and microbial methods
journal, June 2009
- Abe, Yumiko; Aravena, Ramon; Zopfi, Jakob
- Journal of Contaminant Hydrology, Vol. 107, Issue 1-2
Review and re-analysis of domain-specific 16S primers
journal, December 2003
- Baker, G. C.; Smith, J. J.; Cowan, D. A.
- Journal of Microbiological Methods, Vol. 55, Issue 3
Distribution of Organohalide-Respiring Bacteria between Solid and Aqueous Phases
journal, August 2014
- Cápiro, Natalie L.; Wang, Yonggang; Hatt, Janet K.
- Environmental Science & Technology, Vol. 48, Issue 18
Determinants of the microbial community structure of eutrophic, hyporheic river sediments polluted with chlorinated aliphatic hydrocarbons
journal, December 2013
- Hamonts, Kelly; Ryngaert, Annemie; Smidt, Hauke
- FEMS Microbiology Ecology, Vol. 87, Issue 3
Environmental distribution of the trichloroethene reductive dehalogenase gene (tceA) suggests lateral gene transfer among Dehalococcoides: Lateral gene transfer in Dehalococcoides
journal, January 2007
- Krajmalnik-Brown, Rosa; Sung, Youlboong; Ritalahti, Kirsti M.
- FEMS Microbiology Ecology, Vol. 59, Issue 1
The Selective Value of Bacterial Shape
journal, September 2006
- Young, K. D.
- Microbiology and Molecular Biology Reviews, Vol. 70, Issue 3
Experimental Evaluation and Mathematical Modeling of Microbially Enhanced Tetrachloroethene (PCE) Dissolution
journal, February 2007
- Amos, Benjamin K.; Christ, John A.; Abriola, Linda M.
- Environmental Science & Technology, Vol. 41, Issue 3
Mineralization of trichloroethylene by heterotrophic enrichment cultures
report, December 1988
- Phelps, T. J.; Ringelberg, D.; Mikell, A. T.
Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes
journal, February 2008
- Frank, J. A.; Reich, C. I.; Sharma, S.
- Applied and Environmental Microbiology, Vol. 74, Issue 8
Concentration Rebound Following In Situ Chemical Oxidation in Fractured Clay
journal, November 2007
- Mundle, Keely; Reynolds, David A.; West, Michael R.
- Ground Water, Vol. 45, Issue 6
Discovery of a trans -Dichloroethene-Respiring Dehalogenimonas Species in the 1,1,2,2-Tetrachloroethane-Dechlorinating WBC-2 Consortium
journal, August 2012
- Manchester, Marie J.; Hug, Laura A.; Zarek, Matt
- Applied and Environmental Microbiology, Vol. 78, Issue 15
Factors Determining the Attenuation of Chlorinated Aliphatic Hydrocarbons in Eutrophic River Sediment Impacted by Discharging Polluted Groundwater
journal, June 2009
- Hamonts, Kelly; Kuhn, Thomas; Maesen, Miranda
- Environmental Science & Technology, Vol. 43, Issue 14
Microbial structure of an anaerobic bioreactor population that continuously dechlorinates 1,2-dichloropropane
journal, March 2002
- Schlötelburg, Cord; Wintzingerode, Claudia; Hauck, Regine
- FEMS Microbiology Ecology, Vol. 39, Issue 3
Flowpath Independent Monitoring of Reductive Dechlorination Potential in a Fractured Rock Aquifer
journal, September 2009
- Bradley, Paul M.; Lacombe, Pierre J.; Imbrigiotta, Thomas E.
- Ground Water Monitoring & Remediation, Vol. 29, Issue 4
A Role for Dehalobacter spp. in the Reductive Dehalogenation of Dichlorobenzenes and Monochlorobenzene
journal, August 2011
- Nelson, Jennifer L.; Fung, Jennifer M.; Cadillo-Quiroz, Hinsby
- Environmental Science & Technology, Vol. 45, Issue 16
Characterizing flow and transport in fractured geological media: A review
journal, August 2002
- Berkowitz, Brian
- Advances in Water Resources, Vol. 25, Issue 8-12
Experimental Demonstration of Contaminant Removal from Fractured Rock by Boiling
journal, July 2010
- Chen, Fei; Liu, Xiaoling; Falta, Ronald W.
- Environmental Science & Technology, Vol. 44, Issue 16
Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities: Metagenomic and rRNA diversity characterization
journal, February 2013
- Shakya, Migun; Quince, Christopher; Campbell, James H.
- Environmental Microbiology, Vol. 15, Issue 6
Bioaugmentation for chlorinated ethenes using Dehalococcoides sp.: Comparison between batch and column experiments
journal, April 2009
- Schaefer, Charles E.; Condee, Charles W.; Vainberg, Simon
- Chemosphere, Vol. 75, Issue 2
Bioaugmentation for Groundwater Remediation
book, January 2013
- Stroo, Hans F.; Leeson, Andrea; Ward, C. Herb
- Springer New York, NY
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi
journal, April 2012
- Loffler, F. E.; Yan, J.; Ritalahti, K. M.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
A 1,1,1-Trichloroethane-Degrading Anaerobic Mixed Microbial Culture Enhances Biotransformation of Mixtures of Chlorinated Ethenes and Ethanes
journal, October 2006
- Grostern, A.; Edwards, E. A.
- Applied and Environmental Microbiology, Vol. 72, Issue 12
The sulfur cycle of freshwater sediments: Role of thiosulfate
journal, September 1990
- Jørgensen, Bo Barker
- Limnology and Oceanography, Vol. 35, Issue 6
Distribution patterns of attached and suspended bacteria in pristine and contaminated shallow aquifers studied with an in situ sediment exposure microcosm
journal, January 2002
- Griebler, C.; Mindl, B.; Slezak, D.
- Aquatic Microbial Ecology, Vol. 28
Temporal variations in natural attenuation of chlorinated aliphatic hydrocarbons in eutrophic river sediments impacted by a contaminated groundwater plume
journal, April 2012
- Hamonts, Kelly; Kuhn, Thomas; Vos, Johan
- Water Research, Vol. 46, Issue 6
The Sulfur Cycle
journal, June 2007
- Sievert, Stefan; Kiene, Ronald; Schulz-Vogt, Heide
- Oceanography, Vol. 20, Issue 2
Identification and Environmental Distribution of dcpA , Which Encodes the Reductive Dehalogenase Catalyzing the Dichloroelimination of 1,2-Dichloropropane to Propene in Organohalide-Respiring Chloroflexi
journal, November 2013
- Padilla-Crespo, Elizabeth; Yan, Jun; Swift, Cynthia
- Applied and Environmental Microbiology, Vol. 80, Issue 3
Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity
journal, November 2004
- Kodama, Y.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 6
Dechlorinating Microorganisms in a Sedimentary Rock Matrix Contaminated with a Mixture of VOCs
journal, May 2012
- Lima, Gláucia; Parker, Beth; Meyer, Jessica
- Environmental Science & Technology, Vol. 46, Issue 11
Initial Characterization of a Reductive Dehalogenase from Desulfitobacterium chlororespirans Co23.
journal, January 1996
- Loffler, F. E.; Sanford, R. A.; Tiedje, J. M.
- Applied and environmental microbiology, Vol. 62, Issue 10
The Behavior of Dense, Nonaqueous Phase Liquids in Fractured Clay and Rock
journal, September 1991
- Kueper, Bernard H.; McWhorter, David B.
- Ground Water, Vol. 29, Issue 5
Complete Detoxification of Vinyl Chloride by an Anaerobic Enrichment Culture and Identification of the Reductively Dechlorinating Population as a Dehalococcoides Species
journal, February 2003
- He, J.; Ritalahti, K. M.; Aiello, M. R.
- Applied and Environmental Microbiology, Vol. 69, Issue 2
Plume Detachment and Recession Times in Fractured Rock
journal, January 2010
- West, Michael R.; Kueper, Bernard H.
- Ground Water, Vol. 48, Issue 3
Complete chloroform dechlorination by organochlorine respiration and fermentation: Microbial chloroform metabolism
journal, November 2011
- Lee, Matthew; Low, Adrian; Zemb, Olivier
- Environmental Microbiology, Vol. 14, Issue 4
The ecological significance of exchange processes between rivers and groundwater
journal, February 1997
- Brunke, Matthias; Gonser, Tom
- Freshwater Biology, Vol. 37, Issue 1
Quantifying the Effects of 1,1,1-Trichloroethane and 1,1-Dichloroethane on Chlorinated Ethene Reductive Dehalogenases
journal, November 2011
- Chan, Winnie W. M.; Grostern, Ariel; Löffler, Frank E.
- Environmental Science & Technology, Vol. 45, Issue 22
Bioremediation of Chlorinated Ethenes in Fractured Bedrock and Associated Changes in Dechlorinating and Nondechlorinating Microbial Populations
journal, May 2014
- Pérez-de-Mora, Alfredo; Zila, Anna; McMaster, Michaye L.
- Environmental Science & Technology, Vol. 48, Issue 10
Assessment of the Intrinsic Bioremediation Capacity of an Eutrophic River Sediment Polluted by Discharging Chlorinated Aliphatic Hydrocarbons: A Compound-Specific Isotope Approach
journal, July 2009
- Kuhn, Thomas K.; Hamonts, Kelly; Dijk, John A.
- Environmental Science & Technology, Vol. 43, Issue 14
Chloroform respiration to dichloromethane by a Dehalobacter population: Growth-linked reductive dechlorination of chloroform
journal, January 2010
- Grostern, Ariel; Duhamel, Melanie; Dworatzek, Sandra
- Environmental Microbiology, Vol. 12, Issue 4
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes
journal, January 2005
- Seshadri, R.
- Science, Vol. 307, Issue 5706
Diffusive Loss of Non-Aqueous Phase Organic Solvents from Idealized Fracture Networks in Geologic Media
journal, November 1997
- Parker, Beth L.; McWhorter, David B.; Cherry, John A.
- Ground Water, Vol. 35, Issue 6
Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides
journal, November 2009
- McMurdie, Paul J.; Behrens, Sebastian F.; Müller, Jochen A.
- PLoS Genetics, Vol. 5, Issue 11
Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota
journal, March 2006
- Hallam, Steven J.; Mincer, Tracy J.; Schleper, Christa
- PLoS Biology, Vol. 4, Issue 4, Article No. e95
Detection and Quantification of Dehalogenimonas and "Dehalococcoides" Populations via PCR-Based Protocols Targeting 16S rRNA Genes
journal, October 2009
- Yan, J.; Rash, B. A.; Rainey, F. A.
- Applied and Environmental Microbiology, Vol. 75, Issue 23
DNA recovery from soils of diverse composition.
journal, January 1996
- Zhou, J.; Bruns, M. A.; Tiedje, J. M.
- Applied and environmental microbiology, Vol. 62, Issue 2
Works referencing / citing this record:
Effects of biological clogging on 1,1,1-TCA and its intermediates distribution and fate in heterogeneous saturated bio-augmented permeable reactive barriers
journal, August 2018
- Wang, Wenbing; Wu, Yanqing
- Environmental Science and Pollution Research, Vol. 25, Issue 28
Dehalococcoides as a Potential Biomarker Evidence for Uncharacterized Organohalides in Environmental Samples
journal, September 2017
- Lu, Qihong; Yu, Ling; Liang, Zhiwei
- Frontiers in Microbiology, Vol. 8
Predominance role of the superoxide radical over the hydroxyl radical in the dechlorination of trichloroethene in aqueous phase using Cu doped TiO 2
journal, January 2020
- Biyoghe Bi Ndong, Landry; Yeo Kanfolo, Frank Herve
- International Journal of Environmental Analytical Chemistry
Figures / Tables found in this record: