DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Photochemically Generated Thiyl Free Radicals Observed by X-ray Absorption Spectroscopy

Abstract

Sulfur-based thiyl radicals are known to be involved in a wide range of chemical and biological processes, but they are often highly reactive, which makes them difficult to observe directly. We report herein X-ray absorption spectra and analysis that support the direct observation of two different thiyl species generated photochemically by X-ray irradiation. The thiyl radical sulfur K-edge X-ray absorption spectra of both species are characterized by a uniquely low energy transition at about 2465 eV, which occurs at a lower energy than any previously observed feature at the sulfur K-edge and corresponds to a 1s → 3p transition to the singly occupied molecular orbital of the free radical. In conclusion, our results constitute the first observation of substantial levels of thiyl radicals generated by X-ray irradiation and detected by sulfur K-edge X-ray absorption spectroscopy.

Authors:
 [1]; ORCiD logo [2];  [3]; ORCiD logo [4];  [5];  [6]; ORCiD logo [7]; ORCiD logo [3]; ORCiD logo [3]
  1. Stanford Univ., Menlo Park, CA (United States)
  2. Univ. of Saskatchewan, Saskatoon, SK (Canada); Curtin Univ., Bentley, WA (Australia)
  3. Univ. of Saskatchewan, Saskatoon, SK (Canada)
  4. Stonybrook Apiary, Pittstown, NJ (United States)
  5. Chevron Energy Technology Co., Richmond, CA (United States)
  6. Tokyo Institute of Technology, Tokyo (Japan)
  7. Univ. at Albany, State Univ. of New York, Albany, NY (United States)
Publication Date:
Research Org.:
SLAC National Accelerator Lab., Menlo Park, CA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1394076
Grant/Contract Number:  
AC02-76SF00515; CHE-1265679; 04632-2014; 05810-2016; GM57375
Resource Type:
Accepted Manuscript
Journal Name:
Journal of the American Chemical Society
Additional Journal Information:
Journal Volume: 139; Journal Issue: 33; Journal ID: ISSN 0002-7863
Publisher:
American Chemical Society (ACS)
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Sneeden, Eileen Y., Hackett, Mark J., Cotelesage, Julien J. H., Prince, Roger C., Barney, Monica, Goto, Kei, Block, Eric, Pickering, Ingrid J., and George, Graham N. Photochemically Generated Thiyl Free Radicals Observed by X-ray Absorption Spectroscopy. United States: N. p., 2017. Web. doi:10.1021/jacs.7b05116.
Sneeden, Eileen Y., Hackett, Mark J., Cotelesage, Julien J. H., Prince, Roger C., Barney, Monica, Goto, Kei, Block, Eric, Pickering, Ingrid J., & George, Graham N. Photochemically Generated Thiyl Free Radicals Observed by X-ray Absorption Spectroscopy. United States. https://doi.org/10.1021/jacs.7b05116
Sneeden, Eileen Y., Hackett, Mark J., Cotelesage, Julien J. H., Prince, Roger C., Barney, Monica, Goto, Kei, Block, Eric, Pickering, Ingrid J., and George, Graham N. Thu . "Photochemically Generated Thiyl Free Radicals Observed by X-ray Absorption Spectroscopy". United States. https://doi.org/10.1021/jacs.7b05116. https://www.osti.gov/servlets/purl/1394076.
@article{osti_1394076,
title = {Photochemically Generated Thiyl Free Radicals Observed by X-ray Absorption Spectroscopy},
author = {Sneeden, Eileen Y. and Hackett, Mark J. and Cotelesage, Julien J. H. and Prince, Roger C. and Barney, Monica and Goto, Kei and Block, Eric and Pickering, Ingrid J. and George, Graham N.},
abstractNote = {Sulfur-based thiyl radicals are known to be involved in a wide range of chemical and biological processes, but they are often highly reactive, which makes them difficult to observe directly. We report herein X-ray absorption spectra and analysis that support the direct observation of two different thiyl species generated photochemically by X-ray irradiation. The thiyl radical sulfur K-edge X-ray absorption spectra of both species are characterized by a uniquely low energy transition at about 2465 eV, which occurs at a lower energy than any previously observed feature at the sulfur K-edge and corresponds to a 1s → 3p transition to the singly occupied molecular orbital of the free radical. In conclusion, our results constitute the first observation of substantial levels of thiyl radicals generated by X-ray irradiation and detected by sulfur K-edge X-ray absorption spectroscopy.},
doi = {10.1021/jacs.7b05116},
journal = {Journal of the American Chemical Society},
number = 33,
volume = 139,
place = {United States},
year = {Thu Jul 27 00:00:00 EDT 2017},
month = {Thu Jul 27 00:00:00 EDT 2017}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 17 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Theoretical Study of the Thermal Decomposition of Dimethyl Disulfide
journal, October 2010

  • Vandeputte, Aäron G.; Reyniers, Marie-Françoise; Marin, Guy B.
  • The Journal of Physical Chemistry A, Vol. 114, Issue 39
  • DOI: 10.1021/jp103357z

Thiyl Radicals in Organic Synthesis
journal, January 2014

  • Dénès, Fabrice; Pichowicz, Mark; Povie, Guillaume
  • Chemical Reviews, Vol. 114, Issue 5
  • DOI: 10.1021/cr400441m

Effect of Substituents on the Stability of Sulfur-Centered Radicals
journal, September 2016

  • Degirmenci, Isa; Coote, Michelle L.
  • The Journal of Physical Chemistry A, Vol. 120, Issue 37
  • DOI: 10.1021/acs.jpca.6b08223

Role of Hydrogen Bonding on the Reactivity of Thiyl Radicals: A Mass Spectrometric and Computational Study Using the Distonic Radical Ion Approach
journal, October 2016

  • Osburn, Sandra; Chan, Bun; Ryzhov, Victor
  • The Journal of Physical Chemistry A, Vol. 120, Issue 41
  • DOI: 10.1021/acs.jpca.6b08544

Comparison of Thiyl, Alkoxyl, and Alkyl Radical Addition to Double Bonds: The Unusual Contrasting Behavior of Sulfur and Oxygen Radical Chemistry
journal, March 2016

  • Degirmenci, Isa; Coote, Michelle L.
  • The Journal of Physical Chemistry A, Vol. 120, Issue 10
  • DOI: 10.1021/acs.jpca.6b00538

One- and two-electron oxidation of thiols: mechanisms, kinetics and biological fates
journal, November 2015


Thiyl radicals and induction of protein degradation
journal, August 2015


Reversible, Long-Range Radical Transfer in E. coli Class Ia Ribonucleotide Reductase
journal, June 2013

  • Minnihan, Ellen C.; Nocera, Daniel G.; Stubbe, JoAnne
  • Accounts of Chemical Research, Vol. 46, Issue 11
  • DOI: 10.1021/ar4000407

Assessments of Thiyl Radicals in Biosystems: Difficulties and New Applications
journal, September 2011

  • Stoyanovsky, Detcho A.; Maeda, Akihiro; Atkins, James L.
  • Analytical Chemistry, Vol. 83, Issue 17
  • DOI: 10.1021/ac200418s

Paramagnetic Resonance in L‐Cysteine Hydrochloride Irradiated at 77°K
journal, August 1965

  • Akasaka, Kazuyuki
  • The Journal of Chemical Physics, Vol. 43, Issue 4
  • DOI: 10.1063/1.1696900

Sulphur radicals formed by cutting α-keratin
journal, August 1987

  • Chandra, Harish; Symons, Martyn C. R.
  • Nature, Vol. 328, Issue 6133
  • DOI: 10.1038/328833a0

Resonance Raman spectra and structure of phenylthiyl radical
journal, June 1992

  • Tripathi, G. N. R.; Sun, Qun; Armstrong, David A.
  • The Journal of Physical Chemistry, Vol. 96, Issue 13
  • DOI: 10.1021/j100192a031

Sulfur K-Edge XAS as a Probe of Sulfur-Centered Radical Intermediates
journal, March 2007

  • Martin-Diaconescu, Vlad; Kennepohl, Pierre
  • Journal of the American Chemical Society, Vol. 129, Issue 11
  • DOI: 10.1021/ja0676760

Light-Induced Radical Formation and Isomerization of an Aromatic Thiol in Solution Followed by Time-Resolved X-ray Absorption Spectroscopy at the Sulfur K-Edge
journal, March 2017

  • Ochmann, Miguel; von Ahnen, Inga; Cordones, Amy A.
  • Journal of the American Chemical Society, Vol. 139, Issue 13
  • DOI: 10.1021/jacs.6b12992

Synthesis, Structure, and Reactions of a Sulfenic Acid Bearing a Novel Bowl-Type Substituent:  The First Synthesis of a Stable Sulfenic Acid by Direct Oxidation of a Thiol
journal, February 1997

  • Goto, Kei; Holler, Michel; Okazaki, Renji
  • Journal of the American Chemical Society, Vol. 119, Issue 6
  • DOI: 10.1021/ja962994s

Analysis of Sulfur Biochemistry of Sulfur Bacteria Using X-ray Absorption Spectroscopy
journal, July 2001

  • Pickering, Ingrid J.; George, Graham N.; Yu, Eileen Y.
  • Biochemistry, Vol. 40, Issue 27
  • DOI: 10.1021/bi0105532

X-Ray Absorption Spectroscopy as a Probe of Microbial Sulfur Biochemistry: the Nature of Bacterial Sulfur Globules Revisited
journal, August 2008

  • George, G. N.; Gnida, M.; Bazylinski, D. A.
  • Journal of Bacteriology, Vol. 190, Issue 19
  • DOI: 10.1128/JB.00539-08

Measurement of soft X-ray absorption spectra with a fluorescent ion chamber detector
journal, October 1984

  • Lytle, F. W.; Greegor, R. B.; Sandstrom, D. R.
  • Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 226, Issue 2-3
  • DOI: 10.1016/0168-9002(84)90077-9

Sulfur K-Edge Absorption Spectra of Na 2 SO 4 , Na 2 SO 3 , Na 2 S 2 O 3 , and Na 2 S 2 O x ( x =5–8)
journal, February 1986

  • Sekiyama, Hideo; Kosugi, Nobuhiro; Kuroda, Haruo
  • Bulletin of the Chemical Society of Japan, Vol. 59, Issue 2
  • DOI: 10.1246/bcsj.59.575

An all‐electron numerical method for solving the local density functional for polyatomic molecules
journal, January 1990

  • Delley, B.
  • The Journal of Chemical Physics, Vol. 92, Issue 1
  • DOI: 10.1063/1.458452

From molecules to solids with the DMol3 approach
journal, November 2000

  • Delley, B.
  • The Journal of Chemical Physics, Vol. 113, Issue 18
  • DOI: 10.1063/1.1316015

Generalized Gradient Approximation Made Simple
journal, October 1996

  • Perdew, John P.; Burke, Kieron; Ernzerhof, Matthias
  • Physical Review Letters, Vol. 77, Issue 18, p. 3865-3868
  • DOI: 10.1103/PhysRevLett.77.3865

COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient
journal, January 1993


Density-functional approximation for the correlation energy of the inhomogeneous electron gas
journal, June 1986


Electronic Structure Description of the cis -MoOS Unit in Models for Molybdenum Hydroxylases
journal, January 2008

  • Doonan, Christian J.; Rubie, Nick D.; Peariso, Katrina
  • Journal of the American Chemical Society, Vol. 130, Issue 1
  • DOI: 10.1021/ja068512m

Determination of the number of factors and the experimental error in a data matrix
journal, April 1977


Sulfur K-edge X-ray absorption spectroscopy for determining the chemical speciation of sulfur in biological systems
journal, December 1998


Rate constants and transition-state geometry of reactions of alkyl, alkoxyl, and peroxyl radicals with thiols
journal, April 2009

  • Denisov, Evgeny; Chatgilialoglu, Crissostomos; Shestakov, Aleksander
  • International Journal of Chemical Kinetics, Vol. 41, Issue 4
  • DOI: 10.1002/kin.20404

X-ray-induced photo-chemistry and X-ray absorption spectroscopy of biological samples
journal, October 2012

  • George, Graham N.; Pickering, Ingrid J.; Pushie, M. Jake
  • Journal of Synchrotron Radiation, Vol. 19, Issue 6
  • DOI: 10.1107/S090904951203943X

Generation and characterization of the phenylthiyl radical and its oxidation to the phenylthiylperoxy and phenylsulfonyl radicals
journal, January 2016

  • Mardyukov, Artur; Schreiner, Peter R.
  • Physical Chemistry Chemical Physics, Vol. 18, Issue 37
  • DOI: 10.1039/C6CP04278C

Substituent Effects in the Reaction of OH Radicals with Aromatics:  Toluene
journal, October 2003

  • Albarran, Guadalupe; Bentley, J.; Schuler, Robert. H.
  • The Journal of Physical Chemistry A, Vol. 107, Issue 39
  • DOI: 10.1021/jp030550u

Insights into the Nature of the Chemical Bonding in Thiophene-2-thiol from X-ray Absorption Spectroscopy
journal, August 2016

  • Cotelesage, Julien J. H.; Pushie, M. Jake; Vogt, Linda
  • The Journal of Physical Chemistry A, Vol. 120, Issue 35
  • DOI: 10.1021/acs.jpca.6b05874

Effects of Hyperconjugation on the Electronic Structure and Photoreactivity of Organic Sulfonyl Chlorides
journal, December 2008

  • Martin-Diaconescu, Vlad; Kennepohl, Pierre
  • Inorganic Chemistry, Vol. 48, Issue 3
  • DOI: 10.1021/ic801665f

The chemical biology of the persulfide (RSSH)/perthiyl (RSS·) redox couple and possible role in biological redox signaling
journal, December 2016


A Redetermination of the Crystal and Molecular Structure of Glutathione (gamma-L-Glutamyl-L-cysteinylglycine) at 120 K.
journal, January 1987


Works referencing / citing this record:

Synchrotron X-radiolysis of l -cysteine at the sulfur K-edge: Sulfurous products, experimental surprises, and dioxygen as an oxidoreductant
journal, March 2019

  • Frank, Patrick; Sarangi, Ritimukta; Hedman, Britt
  • The Journal of Chemical Physics, Vol. 150, Issue 10
  • DOI: 10.1063/1.5079419