Spatiotemporal modeling of ecological and sociological predictors of West Nile virus in Suffolk County, NY, mosquitoes
Abstract
Abstract Suffolk County, New York, is a locus for West Nile virus ( WNV ) infection in the American northeast that includes the majority of Long Island to the east of New York City. The county has a system of light and gravid traps used for mosquito collection and disease monitoring. In order to identify predictors of WNV incidence in mosquitoes and predict future occurrence of WNV , we have developed a spatiotemporal Bayesian model, beginning with over 40 ecological, meteorological, and built‐environment covariates. A mixed‐effects model including spatially and temporally correlated errors was fit to WNV surveillance data from 2008 to 2014 using the R package “R‐INLA,” which allows for Bayesian modeling using the stochastic partial differential equation ( SPDE ) approach. The integrated nested Laplace approximation ( INLA ) SPDE allows for simultaneous fitting of a temporal parameter and a spatial covariance, while incorporating a variety of likelihood functions and running in R statistical software on a home computer. We found that land cover classified as open water and woody wetlands had a negative association with WNV incidence in mosquitoes, and the count of septic systems was associated with an increase in WNV . Mean temperature at two‐week lagmore »
- Authors:
-
- Oak Ridge Institute for Science and Education, Office of Research and Development National Exposure Research Laboratory U.S. Environmental Protection Agency 960 College Station Road Athens Georgia 30605 USA
- Arthropod‐Borne Disease Laboratory Suffolk County Department of Health Services Yaphank New York 11980 USA
- Office of Research and Development National Exposure Research Laboratory U.S. Environmental Protection Agency 960 College Station Road Athens Georgia 30605 USA
- Publication Date:
- Research Org.:
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, TN (United States); US Environmental Protection Agency, Athens, GA (United States)
- Sponsoring Org.:
- USDOE; USEPA
- OSTI Identifier:
- 1363967
- Alternate Identifier(s):
- OSTI ID: 1367355; OSTI ID: 1393829
- Grant/Contract Number:
- DW8992298301
- Resource Type:
- Published Article
- Journal Name:
- Ecosphere
- Additional Journal Information:
- Journal Name: Ecosphere Journal Volume: 8 Journal Issue: 6; Journal ID: ISSN 2150-8925
- Publisher:
- Wiley Blackwell (John Wiley & Sons)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; 60 APPLIED LIFE SCIENCES; 59 BASIC BIOLOGICAL SCIENCES; Bayesian; Culex pipiens; disease ecology; integrated nested Laplace approximation (INLA); Long Island; septic systems; spatial modeling; spatiotemporal modeling; stochastic partial differential equation (SPDE); Suffolk; West Nile
Citation Formats
Myer, Mark H., Campbell, Scott R., and Johnston, John M. Spatiotemporal modeling of ecological and sociological predictors of West Nile virus in Suffolk County, NY, mosquitoes. United States: N. p., 2017.
Web. doi:10.1002/ecs2.1854.
Myer, Mark H., Campbell, Scott R., & Johnston, John M. Spatiotemporal modeling of ecological and sociological predictors of West Nile virus in Suffolk County, NY, mosquitoes. United States. https://doi.org/10.1002/ecs2.1854
Myer, Mark H., Campbell, Scott R., and Johnston, John M. Thu .
"Spatiotemporal modeling of ecological and sociological predictors of West Nile virus in Suffolk County, NY, mosquitoes". United States. https://doi.org/10.1002/ecs2.1854.
@article{osti_1363967,
title = {Spatiotemporal modeling of ecological and sociological predictors of West Nile virus in Suffolk County, NY, mosquitoes},
author = {Myer, Mark H. and Campbell, Scott R. and Johnston, John M.},
abstractNote = {Abstract Suffolk County, New York, is a locus for West Nile virus ( WNV ) infection in the American northeast that includes the majority of Long Island to the east of New York City. The county has a system of light and gravid traps used for mosquito collection and disease monitoring. In order to identify predictors of WNV incidence in mosquitoes and predict future occurrence of WNV , we have developed a spatiotemporal Bayesian model, beginning with over 40 ecological, meteorological, and built‐environment covariates. A mixed‐effects model including spatially and temporally correlated errors was fit to WNV surveillance data from 2008 to 2014 using the R package “R‐INLA,” which allows for Bayesian modeling using the stochastic partial differential equation ( SPDE ) approach. The integrated nested Laplace approximation ( INLA ) SPDE allows for simultaneous fitting of a temporal parameter and a spatial covariance, while incorporating a variety of likelihood functions and running in R statistical software on a home computer. We found that land cover classified as open water and woody wetlands had a negative association with WNV incidence in mosquitoes, and the count of septic systems was associated with an increase in WNV . Mean temperature at two‐week lag was associated with a strong positive impact, while mean precipitation at no lag and one‐week lag was associated with positive and negative impacts on WNV , respectively. Incorporation of spatiotemporal factors resulted in a marked increase in model goodness‐of‐fit. The predictive power of the model was evaluated on 2015 surveillance results, where the best model achieved a sensitivity of 80.9% and a specificity of 77.0%. The spatial covariate was mapped across the county, identifying a gradient of WNV prevalence increasing from east to west. The Bayesian spatiotemporal model improves upon previous approaches, and we recommend the INLA SPDE methodology as an efficient way to develop robust models from surveillance data to develop and enhance monitoring and control programs. Our study confirms previously found associations between weather conditions and WNV and suggests that wetland cover has a mitigating effect on WNV infection in mosquitoes, while high septic system density is associated with an increase in WNV infection.},
doi = {10.1002/ecs2.1854},
journal = {Ecosphere},
number = 6,
volume = 8,
place = {United States},
year = {Thu Jun 15 00:00:00 EDT 2017},
month = {Thu Jun 15 00:00:00 EDT 2017}
}
https://doi.org/10.1002/ecs2.1854
Web of Science
Figures / Tables:
Works referenced in this record:
AIC model selection and multimodel inference in behavioral ecology: some background, observations, and comparisons
journal, August 2010
- Burnham, Kenneth P.; Anderson, David R.; Huyvaert, Kathryn P.
- Behavioral Ecology and Sociobiology, Vol. 65, Issue 1
Spatio-temporal disease mapping using INLA
journal, November 2010
- Schrödle, Birgit; Held, Leonhard
- Environmetrics, Vol. 22, Issue 6
Ecologic Factors Associated with West Nile Virus Transmission, Northeastern United States
journal, October 2008
- Brown, Heidi E.; Childs, James E.; Diuk-Wasser, Maria A.
- Emerging Infectious Diseases, Vol. 14, Issue 10
Updated world map of the Köppen-Geiger climate classification
journal, January 2007
- Peel, M. C.; Finlayson, B. L.; McMahon, T. A.
- Hydrology and Earth System Sciences, Vol. 11, Issue 5
The Risk of West Nile Virus Infection Is Associated with Combined Sewer Overflow Streams in Urban Atlanta, Georgia, USA
journal, October 2010
- Vazquez-Prokopec, Gonzalo M.; Vanden Eng, Jodi L.; Kelly, Rosmarie
- Environmental Health Perspectives, Vol. 118, Issue 10
Development and validation of a climate-based ensemble prediction model for West Nile Virus infection rates in Culex mosquitoes, Suffolk County, New York
journal, August 2016
- Little, Eliza; Campbell, Scott R.; Shaman, Jeffrey
- Parasites & Vectors, Vol. 9, Issue 1
ROCR: visualizing classifier performance in R
journal, August 2005
- Sing, T.; Sander, O.; Beerenwinkel, N.
- Bioinformatics, Vol. 21, Issue 20
Comparing hierarchical models for spatio-temporally misaligned data using the deviance information criterion
journal, January 2000
- Zhu, Li; Carlin, Bradley P.
- Statistics in Medicine, Vol. 19, Issue 17-18
A characterization of random-coefficient AR(1) models
journal, February 1990
- Pötzelberger, Klaus
- Stochastic Processes and their Applications, Vol. 34, Issue 1
Drought-Induced Amplification and Epidemic Transmission of West Nile Virus in Southern Florida
journal, March 2005
- Shaman, Jeffrey; Day, Jonathan F.; Stieglitz, Marc
- Journal of Medical Entomology, Vol. 42, Issue 2
Effects of Density and Larval Competition on Selected Life History Traits of <I>Culex pipiens quinquefasciatus</I> (Diptera: Culicidae)
journal, September 2000
- Agnew, Philip; Haussy, Claudy; Michalakis, Yannis
- Journal of Medical Entomology, Vol. 37, Issue 5
Bayesian analysis of zero inflated spatiotemporal HIV/TB child mortality data through the INLA and SPDE approaches: Applied to data observed between 1992 and 2010 in rural North East South Africa
journal, June 2013
- Musenge, Eustasius; Chirwa, Tobias Freeman; Kahn, Kathleen
- International Journal of Applied Earth Observation and Geoinformation, Vol. 22
Seasonality and Outbreaks in West Nile Virus Infection
journal, March 2009
- Cruz-Pacheco, Gustavo; Esteva, Lourdes; Vargas, Cristobal
- Bulletin of Mathematical Biology, Vol. 71, Issue 6
Flushing Effect of Rain on Container-Inhabiting Mosquitoes Aedes aegypti and Culex pipiens (Diptera: Culicidae)
journal, January 2008
- Koenraadt, C. J. M.; Harrington, L. C.
- Journal of Medical Entomology, Vol. 45, Issue 1
Local impact of temperature and precipitation on West Nile virus infection in Culex species mosquitoes in northeast Illinois, USA
journal, January 2010
- Ruiz, Marilyn O.; Chaves, Luis F.; Hamer, Gabriel L.
- Parasites & Vectors, Vol. 3, Issue 1
Septic tanks as larval habitats for the mosquitoes Aedes aegypti and Culex quinquefasciatus in Playa-Playita, Puerto Rico
journal, March 2010
- Burke, R.; Barrera, R.; Lewis, M.
- Medical and Veterinary Entomology, Vol. 24, Issue 2
Predation and Control Efficacies of Misgurnus mizolepis (Cypriniformes: Cobitidae) Toward Culex pipiens molestus (Diptera: Culicidae) and Fish Toxicity of Temephos in Laboratory and Septic Tank Conditions
journal, July 2014
- Chae, Seong Chun; Kwon, Young Hyun; Min, Kyung Il
- Journal of Medical Entomology, Vol. 51, Issue 4
Unusual productivity of Aedes aegypti in septic tanks and its implications for dengue control
journal, March 2008
- Barrera, R.; Amador, M.; Diaz, A.
- Medical and Veterinary Entomology, Vol. 22, Issue 1
Generating surfaces of daily meteorological variables over large regions of complex terrain
journal, March 1997
- Thornton, Peter E.; Running, Steven W.; White, Michael A.
- Journal of Hydrology, Vol. 190, Issue 3-4
Combined Sewage Overflow Enhances Oviposition of Culex quinquefasciatus (Diptera: Culicidae) in Urban Areas
journal, March 2009
- Chaves, Luis Fernando; Keogh, Carolyn L.; Vazquez-Prokopec, Gonzalo M.
- Journal of Medical Entomology, Vol. 46, Issue 2
West Nile Virus Risk Assessment and the Bridge Vector Paradigm
journal, March 2005
- Kilpatrick, A. Marm; Kramer, Laura D.; Campbell, Scott R.
- Emerging Infectious Diseases, Vol. 11, Issue 3
A remote sensing and GIS-assisted landscape epidemiology approach to West Nile virus
journal, December 2013
- Young, Sean G.; Tullis, Jason A.; Cothren, Jackson
- Applied Geography, Vol. 45
Importance of Wetlands Management for West Nile Virus Circulation Risk, Camargue, Southern France
journal, August 2014
- Pradier, Sophie; Sandoz, Alain; Paul, Mathilde
- International Journal of Environmental Research and Public Health, Vol. 11, Issue 8
Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations
journal, April 2009
- Rue, Håvard; Martino, Sara; Chopin, Nicolas
- Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 71, Issue 2
Risk factors for human infection with West Nile Virus in Connecticut: a multi-year analysis
journal, January 2009
- Liu, Ann; Lee, Vivian; Galusha, Deron
- International Journal of Health Geographics, Vol. 8, Issue 1
Site-specific prediction of West Nile virus mosquito abundance in Greater Toronto Area using generalized linear mixed models
journal, September 2013
- Yoo, Eun-Hye
- International Journal of Geographical Information Science, Vol. 28, Issue 2
Land Cover Variation and West Nile Virus Prevalence: Patterns, Processes, and Implications for Disease Control
journal, June 2007
- Ezenwa, Vanessa O.; Milheim, Lesley E.; Coffey, Michelle F.
- Vector-Borne and Zoonotic Diseases, Vol. 7, Issue 2
Population Dynamics of Aedes aegypti and Dengue as Influenced by Weather and Human Behavior in San Juan, Puerto Rico
journal, December 2011
- Barrera, Roberto; Amador, Manuel; MacKay, Andrew J.
- PLoS Neglected Tropical Diseases, Vol. 5, Issue 12
West Nile Virus Activity in the United States, 2001
journal, December 2001
- Bernard, Kristen A.; Kramer, Laura D.
- Viral Immunology, Vol. 14, Issue 4
Meteorologically Conditioned Time-Series Predictions of West Nile Virus Vector Mosquitoes
journal, August 2008
- Trawinski, P. R.; MacKay, D. S.
- Vector-Borne and Zoonotic Diseases, Vol. 8, Issue 4
First Nationwide Surveillance of Culex pipiens Complex and Culex torrentium Mosquitoes Demonstrated the Presence of Culex pipiens Biotype pipiens/molestus Hybrids in Germany
journal, September 2013
- Rudolf, Martin; Czajka, Christina; Börstler, Jessica
- PLoS ONE, Vol. 8, Issue 9
Regional Differences in the Association Between Land Cover and West Nile Virus Disease Incidence in Humans in the United States
journal, February 2011
- Bowden, Sarah E.; Magori, Krisztian; Drake, John M.
- The American Journal of Tropical Medicine and Hygiene, Vol. 84, Issue 2
An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach: Link between Gaussian Fields and Gaussian Markov Random Fields
journal, August 2011
- Lindgren, Finn; Rue, Håvard; Lindström, Johan
- Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 73, Issue 4
Spatio-temporal modeling of particulate matter concentration through the SPDE approach
journal, May 2012
- Cameletti, Michela; Lindgren, Finn; Simpson, Daniel
- AStA Advances in Statistical Analysis, Vol. 97, Issue 2
Applying Bayesian spatiotemporal models to fisheries bycatch in the Canadian Arctic
journal, February 2015
- Cosandey-Godin, Aurelie; Krainski, Elias Teixeira; Worm, Boris
- Canadian Journal of Fisheries and Aquatic Sciences, Vol. 72, Issue 2
Considerations for Accurate Identification of Adult Culex restuans (Diptera: Culicidae) in Field Studies
journal, January 2008
- Harrington, Laura C.; Poulson, Rebecca L.
- Journal of Medical Entomology, Vol. 45, Issue 1
Estimation of the Youden Index and its Associated Cutoff Point
journal, August 2005
- Fluss, Ronen; Faraggi, David; Reiser, Benjamin
- Biometrical Journal, Vol. 47, Issue 4
Identification of Environmental Covariates of West Nile Virus Vector Mosquito Population Abundance
journal, June 2010
- Trawinski, Patricia R.; Mackay, D. Scott
- Vector-Borne and Zoonotic Diseases, Vol. 10, Issue 5
Epidemiology and Transmission Dynamics of West Nile Virus Disease
journal, August 2005
- Hayes, Edward B.; Komar, Nicholas; Nasci, Roger S.
- Emerging Infectious Diseases, Vol. 11, Issue 8
Field Trials with tank Mixtures of Bacillus Thuringiensis Subsp. Israelensis and Bacillus Sphaericus Formulations Against Culex Pipiens Larvae in Septic Tanks in Antalya, Turkey
journal, June 2007
- Cetin, Huseyin; Dechant, Peter; Yanikoglu, Atila
- Journal of the American Mosquito Control Association, Vol. 23, Issue 2
Climatological variables and the incidence of Dengue fever in Barbados
journal, December 2004
- Depradine, Colin; Lovell, Ernest
- International Journal of Environmental Health Research, Vol. 14, Issue 6
Origin of the West Nile Virus Responsible for an Outbreak of Encephalitis in the Northeastern United States
journal, December 1999
- Lanciotti, R. S.
- Science, Vol. 286, Issue 5448
Meteorological and Hydrological Influences on the Spatial and Temporal Prevalence of West Nile Virus in <I>Culex</I> Mosquitoes, Suffolk County, New York
journal, July 2011
- Shaman, Jeffrey; Harding, Kerri; Campbell, Scott R.
- Journal of Medical Entomology, Vol. 48, Issue 4
Ovipositional Responses of Two <I>Culex</I> (Diptera: Culicidae) Species to Larvivorous Fish
journal, November 2009
- Walton, William E.; Van Dam, Alex R.; Popko, David A.
- Journal of Medical Entomology, Vol. 46, Issue 6
An Update on the Potential of North American Mosquitoes (Diptera: Culicidae) to Transmit West Nile Virus
journal, January 2005
- Turell, Michael J.; Dohm, David J.; Sardelis, Michael R.
- Journal of Medical Entomology, Vol. 42, Issue 1
Modeling the Spatial Distribution of Mosquito Vectors for West Nile Virus in Connecticut, USA
journal, September 2006
- Diuk-Wasser, Maria A.; Brown, Heidi E.; Andreadis, Theodore G.
- Vector-Borne and Zoonotic Diseases, Vol. 6, Issue 3