Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains
Abstract
Spatial isolation of soil organic carbon (SOC) in different sized pores may be a mechanism by which otherwise labile carbon (C) could be protected in soils. When soil water content increases, the hydrologic connectivity of soil pores also increases, allowing greater transport of SOC and other resources from protected locations, to microbially colonized locations more favorable to decomposition. The heterogeneous distribution of specialized decomposers, C, and other resources throughout the soil indicates that the metabolism or persistence of soil C compounds is highly dependent on short-distance transport processes. The objective of this research was to characterize the complexity of C in pore waters held at weak and strong water tensions (effectively soil solution held behind coarse- and fine-pore throats, respectively) and evaluate the microbial decomposability of these pore waters. We saturated intact soil cores and extracted pore waters with increasing suction pressures to sequentially sample pore waters from increasingly fine pore domains. Ultrahigh resolution mass spectrometry of the SOC was used to profile the major biochemical classes (i.e., lipids, proteins, lignin, carbohydrates, and condensed aromatics) of compounds present in the pore waters; some of these samples were then used as substrates for growth of Cellvibrio japonicus (DSMZ 16018), Streptomyces cellulosaemore »
- Authors:
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- Contributing Org.:
- PNNL-Univ. of Maryland Joint Global Climate Change Research Inst., College Park, MD (United States)
- OSTI Identifier:
- 1390383
- Alternate Identifier(s):
- OSTI ID: 1342226; OSTI ID: 1353307
- Report Number(s):
- PNNL-SA-118268
Journal ID: ISSN 0038-0717; S0038071716306447; PII: S0038071716306447
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Published Article
- Journal Name:
- Soil Biology and Biochemistry
- Additional Journal Information:
- Journal Name: Soil Biology and Biochemistry Journal Volume: 107 Journal Issue: C; Journal ID: ISSN 0038-0717
- Publisher:
- Elsevier
- Country of Publication:
- United Kingdom
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Pore water; Carbon protection; Soil organic carbon; Soil structure; Decomposability; Environmental Molecular Sciences Laboratory
Citation Formats
Bailey, V. L., Smith, A. P., Tfaily, M., Fansler, S. J., and Bond-Lamberty, B. Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains. United Kingdom: N. p., 2017.
Web. doi:10.1016/j.soilbio.2016.11.025.
Bailey, V. L., Smith, A. P., Tfaily, M., Fansler, S. J., & Bond-Lamberty, B. Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains. United Kingdom. https://doi.org/10.1016/j.soilbio.2016.11.025
Bailey, V. L., Smith, A. P., Tfaily, M., Fansler, S. J., and Bond-Lamberty, B. Sat .
"Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains". United Kingdom. https://doi.org/10.1016/j.soilbio.2016.11.025.
@article{osti_1390383,
title = {Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains},
author = {Bailey, V. L. and Smith, A. P. and Tfaily, M. and Fansler, S. J. and Bond-Lamberty, B.},
abstractNote = {Spatial isolation of soil organic carbon (SOC) in different sized pores may be a mechanism by which otherwise labile carbon (C) could be protected in soils. When soil water content increases, the hydrologic connectivity of soil pores also increases, allowing greater transport of SOC and other resources from protected locations, to microbially colonized locations more favorable to decomposition. The heterogeneous distribution of specialized decomposers, C, and other resources throughout the soil indicates that the metabolism or persistence of soil C compounds is highly dependent on short-distance transport processes. The objective of this research was to characterize the complexity of C in pore waters held at weak and strong water tensions (effectively soil solution held behind coarse- and fine-pore throats, respectively) and evaluate the microbial decomposability of these pore waters. We saturated intact soil cores and extracted pore waters with increasing suction pressures to sequentially sample pore waters from increasingly fine pore domains. Ultrahigh resolution mass spectrometry of the SOC was used to profile the major biochemical classes (i.e., lipids, proteins, lignin, carbohydrates, and condensed aromatics) of compounds present in the pore waters; some of these samples were then used as substrates for growth of Cellvibrio japonicus (DSMZ 16018), Streptomyces cellulosae (ATCC® 25439™), and Trichoderma reseei (QM6a) in 7 day incubations. The soluble C in finer pores was more complex than the soluble C in coarser pores, and the incubations revealed that the more complex C in these fine pores is not recalcitrant. The decomposition of this complex C led to greater losses of C through respiration than the simpler C from coarser pore waters. Our research suggests that soils that experience repeated cycles of drying and wetting may result in patterns of CO2 fluxes that are driven by i) the transport of C from protected pools into active, ii) the chemical quality of the potentially soluble C, and iii) the type of microorganisms most likely to metabolize this C.},
doi = {10.1016/j.soilbio.2016.11.025},
journal = {Soil Biology and Biochemistry},
number = C,
volume = 107,
place = {United Kingdom},
year = {Sat Apr 01 00:00:00 EDT 2017},
month = {Sat Apr 01 00:00:00 EDT 2017}
}
https://doi.org/10.1016/j.soilbio.2016.11.025
Web of Science
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- Homyak, Peter M.; Blankinship, Joseph C.; Slessarev, Eric W.
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- Newcomb, C. J.; Qafoku, N. P.; Grate, J. W.
- Nature Communications, Vol. 8, Issue 1
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- Environmental Research Letters, Vol. 14, Issue 8
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- Bailey, Vanessa L.; Bond‐Lamberty, Ben; DeAngelis, Kristen
- Global Change Biology, Vol. 24, Issue 3
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- Baveye, Philippe C.; Otten, Wilfred; Kravchenko, Alexandra
- Frontiers in Microbiology, Vol. 9
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- Pracht, Lara E.; Tfaily, Malak M.; Ardissono, Robert J.
- Biogeosciences, Vol. 15, Issue 6
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- Sengupta, Aditi; Indivero, Julia; Gunn, Cailene
- Biogeosciences, Vol. 16, Issue 19