DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes

Abstract

The breakdown of plant biomass to simple sugars is essential for the production of second-generation biofuels and high-value bioproducts. Currently, enzymes produced from filamentous fungi are used for deconstructing plant cell wall polysaccharides into fermentable sugars for biorefinery applications. A post-translational N-terminal pyroglutamate modification observed in some of these enzymes occurs when N-terminal glutamine or glutamate is cyclized to form a five-membered ring. This modification has been shown to confer resistance to thermal denaturation for CBH-1 and EG-1 cellulases. In mammalian cells, the formation of pyroglutamate is catalyzed by glutaminyl cyclases. Using the model filamentous fungus Neurospora crassa, we identified two genes (qc-1 and qc-2) that encode proteins homologous to mammalian glutaminyl cyclases. We show that qc-1 and qc-2 are essential for catalyzing the formation of an N-terminal pyroglutamate on CBH-1 and GH5-1. CBH-1 and GH5-1 produced in a Δqc-1 Δqc-2 mutant, and thus lacking the N-terminal pyroglutamate modification, showed greater sensitivity to thermal denaturation, and for GH5-1, susceptibility to proteolytic cleavage. QC-1 and QC-2 are endoplasmic reticulum (ER)-localized proteins. The pyroglutamate modification is predicted to occur in a number of additional fungal proteins that have diverse functions. The identification of glutaminyl cyclases in fungi may have implications for productionmore » of lignocellulolytic enzymes, heterologous expression, and biotechnological applications revolving around protein stability.« less

Authors:
 [1];  [1];  [1];  [1]; ORCiD logo [2]
  1. Univ. of California, Berkeley, CA (United States)
  2. Univ. of California, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
National Institutes of Health (NIH); USDOE
OSTI Identifier:
1379648
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
mBio (Online)
Additional Journal Information:
Journal Name: mBio (Online); Journal Volume: 8; Journal Issue: 1; Journal ID: ISSN 2150-7511
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Wu, Vincent W., Dana, Craig M., Iavarone, Anthony T., Clark, Douglas S., and Glass, N. Louise. Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes. United States: N. p., 2017. Web. doi:10.1128/mBio.02231-16.
Wu, Vincent W., Dana, Craig M., Iavarone, Anthony T., Clark, Douglas S., & Glass, N. Louise. Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes. United States. https://doi.org/10.1128/mBio.02231-16
Wu, Vincent W., Dana, Craig M., Iavarone, Anthony T., Clark, Douglas S., and Glass, N. Louise. Tue . "Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes". United States. https://doi.org/10.1128/mBio.02231-16. https://www.osti.gov/servlets/purl/1379648.
@article{osti_1379648,
title = {Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes},
author = {Wu, Vincent W. and Dana, Craig M. and Iavarone, Anthony T. and Clark, Douglas S. and Glass, N. Louise},
abstractNote = {The breakdown of plant biomass to simple sugars is essential for the production of second-generation biofuels and high-value bioproducts. Currently, enzymes produced from filamentous fungi are used for deconstructing plant cell wall polysaccharides into fermentable sugars for biorefinery applications. A post-translational N-terminal pyroglutamate modification observed in some of these enzymes occurs when N-terminal glutamine or glutamate is cyclized to form a five-membered ring. This modification has been shown to confer resistance to thermal denaturation for CBH-1 and EG-1 cellulases. In mammalian cells, the formation of pyroglutamate is catalyzed by glutaminyl cyclases. Using the model filamentous fungus Neurospora crassa, we identified two genes (qc-1 and qc-2) that encode proteins homologous to mammalian glutaminyl cyclases. We show that qc-1 and qc-2 are essential for catalyzing the formation of an N-terminal pyroglutamate on CBH-1 and GH5-1. CBH-1 and GH5-1 produced in a Δqc-1 Δqc-2 mutant, and thus lacking the N-terminal pyroglutamate modification, showed greater sensitivity to thermal denaturation, and for GH5-1, susceptibility to proteolytic cleavage. QC-1 and QC-2 are endoplasmic reticulum (ER)-localized proteins. The pyroglutamate modification is predicted to occur in a number of additional fungal proteins that have diverse functions. The identification of glutaminyl cyclases in fungi may have implications for production of lignocellulolytic enzymes, heterologous expression, and biotechnological applications revolving around protein stability.},
doi = {10.1128/mBio.02231-16},
journal = {mBio (Online)},
number = 1,
volume = 8,
place = {United States},
year = {Tue Jan 17 00:00:00 EST 2017},
month = {Tue Jan 17 00:00:00 EST 2017}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 9 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
journal, February 2007

  • Himmel, M. E.; Ding, S.-Y.; Johnson, D. K.
  • Science, Vol. 315, Issue 5813, p. 804-807
  • DOI: 10.1126/science.1137016

Progress and Challenges in Enzyme Development for Biomass Utilization
book, June 2007

  • Merino, Sandra T.; Cherry, Joel; Olsson, Lisbeth
  • Biofuels, Vol. 108, p. 95-120
  • DOI: 10.1007/10_2007_066

Glutaminyl Cyclases Display Significant Catalytic Proficiency for Glutamyl Substrates
journal, November 2009

  • Seifert, Franziska; Schulz, Katrin; Koch, Birgit
  • Biochemistry, Vol. 48, Issue 50
  • DOI: 10.1021/bi9018835

Glutaminyl cyclases from animals and plants: a case of functionally convergent protein evolution
journal, August 2008

  • Schilling, Stephan; Wasternack, Claus; Demuth, Hans-Ulrich
  • Biological Chemistry, Vol. 389, Issue 8
  • DOI: 10.1515/BC.2008.111

Primary structure and functional expression of a glutaminyl cyclase.
journal, November 1991

  • Pohl, T.; Zimmer, M.; Mugele, K.
  • Proceedings of the National Academy of Sciences, Vol. 88, Issue 22
  • DOI: 10.1073/pnas.88.22.10059

Pyroglutamate-Aβ: Role in the natural history of Alzheimer's disease
journal, December 2010

  • Gunn, Adam P.; Masters, Colin L.; Cherny, Robert A.
  • The International Journal of Biochemistry & Cell Biology, Vol. 42, Issue 12
  • DOI: 10.1016/j.biocel.2010.08.015

Dipeptidyl Peptidase IV (DPIV/CD26) Degradation of Glucagon
journal, February 2000

  • Hinke, Simon Amadeus; Pospisilik, J. Andrew; Demuth, Hans-Ulrich
  • Journal of Biological Chemistry, Vol. 275, Issue 6
  • DOI: 10.1074/jbc.275.6.3827

Snake venom glutaminyl cyclase
journal, September 2006


Roles of N-terminal Pyroglutamate in Maintaining Structural Integrity and pKa Values of Catalytic Histidine Residues in Bullfrog Ribonuclease 3
journal, January 2006


Mutagenesis of Trichoderma reesei endoglucanase I: impact of expression host on activity and stability at elevated temperatures
journal, January 2015

  • Chokhawala, Harshal A.; Roche, Christine M.; Kim, Tae-Wan
  • BMC Biotechnology, Vol. 15, Issue 1
  • DOI: 10.1186/s12896-015-0118-z

The importance of pyroglutamate in cellulase Cel7A: Importance of Pyroglutamate in Cel7A
journal, January 2014

  • Dana, Craig M.; Dotson-Fagerstrom, Alexandra; Roche, Christine M.
  • Biotechnology and Bioengineering, Vol. 111, Issue 4
  • DOI: 10.1002/bit.25178

Human glutaminyl cyclase and bacterial zinc aminopeptidase share a common fold and active site
journal, February 2004

  • Booth, Rachell E.; Lovell, Simon C.; Misquitta, Stephanie A.
  • BMC Biology, Vol. 2, Issue 1
  • DOI: 10.1186/1741-7007-2-2

Isolation of an Isoenzyme of Human Glutaminyl Cyclase: Retention in the Golgi Complex Suggests Involvement in the Protein Maturation Machinery
journal, June 2008

  • Cynis, Holger; Rahfeld, Jens-Ulrich; Stephan, Anett
  • Journal of Molecular Biology, Vol. 379, Issue 5
  • DOI: 10.1016/j.jmb.2008.03.078

Glutaminyl-Cyclase Expression in the Bovine/Porcine Hypothalamus and Pituitary
journal, June 1995


Structure and Distribution of Organelles and Cellular Location of Calcium Transporters in Neurospora crassa
journal, October 2009

  • Bowman, Barry J.; Draskovic, Marija; Freitag, Michael
  • Eukaryotic Cell, Vol. 8, Issue 12
  • DOI: 10.1128/EC.00174-09

The Sec61 complex is located in both the ER and the ER-Golgi intermediate compartment
journal, May 1999


Expression, crystal structure and cellulase activity of the thermostable cellobiohydrolase Cel7A from the fungus Humicola grisea var. thermoidea
journal, August 2014

  • Momeni, Majid Haddad; Goedegebuur, Frits; Hansson, Henrik
  • Acta Crystallographica Section D Biological Crystallography, Vol. 70, Issue 9
  • DOI: 10.1107/S1399004714013844

Three-dimensional structure of a thermostable native cellobiohydrolase, CBH IB, and molecular characterization of the cel7 gene from the filamentous fungus, Talaromyces emersonii
journal, November 2004

  • Grassick, Alice; Murray, Patrick G.; Thompson, Roisin
  • European Journal of Biochemistry, Vol. 271, Issue 22, p. 4495-4506
  • DOI: 10.1111/j.1432-1033.2004.04409.x

Crystal structures of Melanocarpus albomyces cellobiohydrolase Cel7B in complex with cello-oligomers show high flexibility in the substrate binding
journal, August 2008

  • Parkkinen, Tarja; Koivula, Anu; Vehmaanperä, Jari
  • Protein Science, Vol. 17, Issue 8
  • DOI: 10.1110/ps.034488.108

Family 7 cellobiohydrolases from Phanerochaete chrysosporium: crystal structure of the catalytic module of Cel7D (CBH58) at 1.32 Å resolution and homology models of the isozymes
journal, December 2001

  • Muñoz, Inés G.; Ubhayasekera, Wimal; Henriksson, Hongbin
  • Journal of Molecular Biology, Vol. 314, Issue 5, p. 1097-1111
  • DOI: 10.1006/jmbi.2000.5180

Three-Dimensional Structure of the Catalytic Core of Acetylxylan Esterase from Trichoderma reesei: Insights into the Deacetylation Mechanism
journal, December 2000

  • Hakulinen, Nina; Tenkanen, Maija; Rouvinen, Juha
  • Journal of Structural Biology, Vol. 132, Issue 3
  • DOI: 10.1006/jsbi.2000.4318

The X-ray crystal structure of the Trichoderma reesei family 12 endoglucanase 3, Cel12A, at 1.9 Å resolution1 1Edited by A. R. Fersht
journal, April 2001

  • Sandgren, Mats; Shaw, Andrew; Ropp, Traci H.
  • Journal of Molecular Biology, Vol. 308, Issue 2
  • DOI: 10.1006/jmbi.2001.4583

Biophysical and Structural Analysis of a Novel Heme b Iron Ligation in the Flavocytochrome Cellobiose Dehydrogenase
journal, August 2003

  • Rotsaert, Frederik A. J.; Hallberg, B. Martin; de Vries, Simon
  • Journal of Biological Chemistry, Vol. 278, Issue 35
  • DOI: 10.1074/jbc.M302653200

Substrate specificity and subsite mobility in T. aurantiacus xylanase 10A
journal, November 2001


Expression and characterization of the Neurospora crassa endoglucanase GH5-1
journal, February 2011

  • Sun, Jianping; Phillips, Christopher M.; Anderson, Charles T.
  • Protein Expression and Purification, Vol. 75, Issue 2
  • DOI: 10.1016/j.pep.2010.08.016

Glutaminyl cyclases unfold glutamyl cyclase activity under mild acid conditions
journal, March 2004


Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
journal, December 2009

  • Tian, Chaoguang; Beeson, William T.; Iavarone, Anthony T.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 52
  • DOI: 10.1073/pnas.0906810106

Quantitative Proteomic Approach for Cellulose Degradation by Neurospora crassa
journal, September 2011

  • Phillips, Christopher M.; Iavarone, Anthony T.; Marletta, Michael A.
  • Journal of Proteome Research, Vol. 10, Issue 9
  • DOI: 10.1021/pr200329b

Trifluoromethanesulfonic acid-based proteomic analysis of cell wall and secreted proteins of the ascomycetous fungi Neurospora crassa and Candida albicans
journal, October 2009

  • Maddi, Abhiram; Bowman, Shaun M.; Free, Stephen J.
  • Fungal Genetics and Biology, Vol. 46, Issue 10
  • DOI: 10.1016/j.fgb.2009.06.005

A proteomic and genetic analysis of the Neurospora crassa conidia cell wall proteins identifies two glycosyl hydrolases involved in cell wall remodeling
journal, September 2016


To protect peptide pharmaceuticals against peptidases
journal, March 2010

  • Rink, R.; Arkema-Meter, A.; Baudoin, I.
  • Journal of Pharmacological and Toxicological Methods, Vol. 61, Issue 2
  • DOI: 10.1016/j.vascn.2010.02.010

IsoQC (QPCTL) knock-out mice suggest differential substrate conversion by glutaminyl cyclase isoenzymes
journal, January 2016

  • Becker, Andreas; Eichentopf, Rico; Sedlmeier, Reinhard
  • Biological Chemistry, Vol. 397, Issue 1
  • DOI: 10.1515/hsz-2015-0192

The isoenzyme of glutaminyl cyclase is an important regulator of monocyte infiltration under inflammatory conditions
journal, July 2011

  • Cynis, Holger; Hoffmann, Torsten; Friedrich, Daniel
  • EMBO Molecular Medicine, Vol. 3, Issue 9
  • DOI: 10.1002/emmm.201100158

One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy
journal, February 2016

  • Yofe, Ido; Weill, Uri; Meurer, Matthias
  • Nature Methods, Vol. 13, Issue 4
  • DOI: 10.1038/nmeth.3795

Directed evolution of a secretory leader for the improved expression of heterologous proteins and full-length antibodies in Saccharomyces cerevisiae
journal, August 2009

  • Rakestraw, J. Andy; Sazinsky, Stephen L.; Piatesi, Andrea
  • Biotechnology and Bioengineering, Vol. 103, Issue 6
  • DOI: 10.1002/bit.22338

Systems biological approaches towards understanding cellulase production by Trichoderma reesei
journal, January 2013


Small proteins of plant-pathogenic fungi secreted during host colonization
journal, December 2005


On the mechanism of sensing unfolded protein in the endoplasmic reticulum
journal, December 2005

  • Credle, J. J.; Finer-Moore, J. S.; Papa, F. R.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 52
  • DOI: 10.1073/pnas.0509487102

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
journal, July 2002


RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
journal, August 2006


A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
journal, June 2006

  • Colot, H. V.; Park, G.; Turner, G. E.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 27
  • DOI: 10.1073/pnas.0601456103

Engineering and characterization of a superfolder green fluorescent protein
journal, December 2005

  • Pédelacq, Jean-Denis; Cabantous, Stéphanie; Tran, Timothy
  • Nature Biotechnology, Vol. 24, Issue 1, p. 79-88
  • DOI: 10.1038/nbt1172

Cyclosporin A-resistance based gene placement system for Neurospora crassa
journal, May 2007


Identification and Characterization of LFD-2, a Predicted Fringe Protein Required for Membrane Integrity during Cell Fusion in Neurospora crassa
journal, January 2015

  • Palma-Guerrero, Javier; Zhao, Jiuhai; Gonçalves, A. Pedro
  • Eukaryotic Cell, Vol. 14, Issue 3
  • DOI: 10.1128/EC.00233-14

Microplate-based filter paper assay to measure total cellulase activity
journal, January 2004

  • Xiao, Zhizhuang; Storms, Reginald; Tsang, Adrian
  • Biotechnology and Bioengineering, Vol. 88, Issue 7
  • DOI: 10.1002/bit.20286

Letter to the editors
journal, November 1984


The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei
journal, July 1994


Crystal Complex Structures Reveal How Substrate is Bound in the −4 to the +2 Binding Sites of Humicola grisea Cel12A
journal, October 2004

  • Sandgren, Mats; Berglund, Gunnar I.; Shaw, Andrew
  • Journal of Molecular Biology, Vol. 342, Issue 5
  • DOI: 10.1016/j.jmb.2004.07.098

UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004

  • Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C.
  • Journal of Computational Chemistry, Vol. 25, Issue 13
  • DOI: 10.1002/jcc.20084

Crystal structures of human glutaminyl cyclase, an enzyme responsible for protein N-terminal pyroglutamate formation
journal, August 2005

  • Huang, K. -F.; Liu, Y. -L.; Cheng, W. -J.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 37
  • DOI: 10.1073/pnas.0504184102

Works referencing / citing this record: