Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes
Abstract
The breakdown of plant biomass to simple sugars is essential for the production of second-generation biofuels and high-value bioproducts. Currently, enzymes produced from filamentous fungi are used for deconstructing plant cell wall polysaccharides into fermentable sugars for biorefinery applications. A post-translational N-terminal pyroglutamate modification observed in some of these enzymes occurs when N-terminal glutamine or glutamate is cyclized to form a five-membered ring. This modification has been shown to confer resistance to thermal denaturation for CBH-1 and EG-1 cellulases. In mammalian cells, the formation of pyroglutamate is catalyzed by glutaminyl cyclases. Using the model filamentous fungus Neurospora crassa, we identified two genes (qc-1 and qc-2) that encode proteins homologous to mammalian glutaminyl cyclases. We show that qc-1 and qc-2 are essential for catalyzing the formation of an N-terminal pyroglutamate on CBH-1 and GH5-1. CBH-1 and GH5-1 produced in a Δqc-1 Δqc-2 mutant, and thus lacking the N-terminal pyroglutamate modification, showed greater sensitivity to thermal denaturation, and for GH5-1, susceptibility to proteolytic cleavage. QC-1 and QC-2 are endoplasmic reticulum (ER)-localized proteins. The pyroglutamate modification is predicted to occur in a number of additional fungal proteins that have diverse functions. The identification of glutaminyl cyclases in fungi may have implications for productionmore »
- Authors:
-
- Univ. of California, Berkeley, CA (United States)
- Univ. of California, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- National Institutes of Health (NIH); USDOE
- OSTI Identifier:
- 1379648
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- mBio (Online)
- Additional Journal Information:
- Journal Name: mBio (Online); Journal Volume: 8; Journal Issue: 1; Journal ID: ISSN 2150-7511
- Publisher:
- American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Wu, Vincent W., Dana, Craig M., Iavarone, Anthony T., Clark, Douglas S., and Glass, N. Louise. Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes. United States: N. p., 2017.
Web. doi:10.1128/mBio.02231-16.
Wu, Vincent W., Dana, Craig M., Iavarone, Anthony T., Clark, Douglas S., & Glass, N. Louise. Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes. United States. https://doi.org/10.1128/mBio.02231-16
Wu, Vincent W., Dana, Craig M., Iavarone, Anthony T., Clark, Douglas S., and Glass, N. Louise. Tue .
"Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes". United States. https://doi.org/10.1128/mBio.02231-16. https://www.osti.gov/servlets/purl/1379648.
@article{osti_1379648,
title = {Identification of Glutaminyl Cyclase Genes Involved in Pyroglutamate Modification of Fungal Lignocellulolytic Enzymes},
author = {Wu, Vincent W. and Dana, Craig M. and Iavarone, Anthony T. and Clark, Douglas S. and Glass, N. Louise},
abstractNote = {The breakdown of plant biomass to simple sugars is essential for the production of second-generation biofuels and high-value bioproducts. Currently, enzymes produced from filamentous fungi are used for deconstructing plant cell wall polysaccharides into fermentable sugars for biorefinery applications. A post-translational N-terminal pyroglutamate modification observed in some of these enzymes occurs when N-terminal glutamine or glutamate is cyclized to form a five-membered ring. This modification has been shown to confer resistance to thermal denaturation for CBH-1 and EG-1 cellulases. In mammalian cells, the formation of pyroglutamate is catalyzed by glutaminyl cyclases. Using the model filamentous fungus Neurospora crassa, we identified two genes (qc-1 and qc-2) that encode proteins homologous to mammalian glutaminyl cyclases. We show that qc-1 and qc-2 are essential for catalyzing the formation of an N-terminal pyroglutamate on CBH-1 and GH5-1. CBH-1 and GH5-1 produced in a Δqc-1 Δqc-2 mutant, and thus lacking the N-terminal pyroglutamate modification, showed greater sensitivity to thermal denaturation, and for GH5-1, susceptibility to proteolytic cleavage. QC-1 and QC-2 are endoplasmic reticulum (ER)-localized proteins. The pyroglutamate modification is predicted to occur in a number of additional fungal proteins that have diverse functions. The identification of glutaminyl cyclases in fungi may have implications for production of lignocellulolytic enzymes, heterologous expression, and biotechnological applications revolving around protein stability.},
doi = {10.1128/mBio.02231-16},
journal = {mBio (Online)},
number = 1,
volume = 8,
place = {United States},
year = {Tue Jan 17 00:00:00 EST 2017},
month = {Tue Jan 17 00:00:00 EST 2017}
}
Web of Science
Works referenced in this record:
Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
journal, February 2007
- Himmel, M. E.; Ding, S.-Y.; Johnson, D. K.
- Science, Vol. 315, Issue 5813, p. 804-807
Progress and Challenges in Enzyme Development for Biomass Utilization
book, June 2007
- Merino, Sandra T.; Cherry, Joel; Olsson, Lisbeth
- Biofuels, Vol. 108, p. 95-120
Glutaminyl Cyclases Display Significant Catalytic Proficiency for Glutamyl Substrates
journal, November 2009
- Seifert, Franziska; Schulz, Katrin; Koch, Birgit
- Biochemistry, Vol. 48, Issue 50
Glutaminyl cyclases from animals and plants: a case of functionally convergent protein evolution
journal, August 2008
- Schilling, Stephan; Wasternack, Claus; Demuth, Hans-Ulrich
- Biological Chemistry, Vol. 389, Issue 8
Primary structure and functional expression of a glutaminyl cyclase.
journal, November 1991
- Pohl, T.; Zimmer, M.; Mugele, K.
- Proceedings of the National Academy of Sciences, Vol. 88, Issue 22
Pyroglutamate-Aβ: Role in the natural history of Alzheimer's disease
journal, December 2010
- Gunn, Adam P.; Masters, Colin L.; Cherny, Robert A.
- The International Journal of Biochemistry & Cell Biology, Vol. 42, Issue 12
Functional Comparison of Two Human Monocyte Chemotactic Protein-2 Isoforms, Role of the Amino-Terminal Pyroglutamic Acid and Processing by CD26/Dipeptidyl Peptidase IV †
journal, September 1998
- Van Coillie, Els; Proost, Paul; Van Aelst, Ilse
- Biochemistry, Vol. 37, Issue 36
Pyroglutamyl peptidase type I from Trypanosoma brucei: a new virulence factor from African trypanosomes that de-blocks regulatory peptides in the plasma of infected hosts
journal, February 2006
- Morty, Rory E.; Bulau, Patrick; Pellé, Roger
- Biochemical Journal, Vol. 394, Issue 3
Dipeptidyl Peptidase IV (DPIV/CD26) Degradation of Glucagon
journal, February 2000
- Hinke, Simon Amadeus; Pospisilik, J. Andrew; Demuth, Hans-Ulrich
- Journal of Biological Chemistry, Vol. 275, Issue 6
Snake venom glutaminyl cyclase
journal, September 2006
- Pawlak, Joanna; Manjunatha Kini, R.
- Toxicon, Vol. 48, Issue 3
Roles of N-terminal Pyroglutamate in Maintaining Structural Integrity and pKa Values of Catalytic Histidine Residues in Bullfrog Ribonuclease 3
journal, January 2006
- Lou, Yuan-Chao; Huang, Yu-Chie; Pan, Yun-Ru
- Journal of Molecular Biology, Vol. 355, Issue 3
Mutagenesis of Trichoderma reesei endoglucanase I: impact of expression host on activity and stability at elevated temperatures
journal, January 2015
- Chokhawala, Harshal A.; Roche, Christine M.; Kim, Tae-Wan
- BMC Biotechnology, Vol. 15, Issue 1
The importance of pyroglutamate in cellulase Cel7A: Importance of Pyroglutamate in Cel7A
journal, January 2014
- Dana, Craig M.; Dotson-Fagerstrom, Alexandra; Roche, Christine M.
- Biotechnology and Bioengineering, Vol. 111, Issue 4
Human glutaminyl cyclase and bacterial zinc aminopeptidase share a common fold and active site
journal, February 2004
- Booth, Rachell E.; Lovell, Simon C.; Misquitta, Stephanie A.
- BMC Biology, Vol. 2, Issue 1
Isolation of an Isoenzyme of Human Glutaminyl Cyclase: Retention in the Golgi Complex Suggests Involvement in the Protein Maturation Machinery
journal, June 2008
- Cynis, Holger; Rahfeld, Jens-Ulrich; Stephan, Anett
- Journal of Molecular Biology, Vol. 379, Issue 5
Glutaminyl-Cyclase Expression in the Bovine/Porcine Hypothalamus and Pituitary
journal, June 1995
- Böckers, Tobias M.; Kreutz, Michael R.; Pohl, Thomas
- Journal of Neuroendocrinology, Vol. 7, Issue 6
Evidence that luminal ER proteins are sorted from secreted proteins in a post-ER compartment.
journal, April 1988
- Pelham, H. R.
- The EMBO Journal, Vol. 7, Issue 4
Structure and Distribution of Organelles and Cellular Location of Calcium Transporters in Neurospora crassa
journal, October 2009
- Bowman, Barry J.; Draskovic, Marija; Freitag, Michael
- Eukaryotic Cell, Vol. 8, Issue 12
The Sec61 complex is located in both the ER and the ER-Golgi intermediate compartment
journal, May 1999
- Greenfield, J. J.; High, S.
- Journal of Cell Science, Vol. 112, Issue 10
Expression, crystal structure and cellulase activity of the thermostable cellobiohydrolase Cel7A from the fungus Humicola grisea var. thermoidea
journal, August 2014
- Momeni, Majid Haddad; Goedegebuur, Frits; Hansson, Henrik
- Acta Crystallographica Section D Biological Crystallography, Vol. 70, Issue 9
Three-dimensional structure of a thermostable native cellobiohydrolase, CBH IB, and molecular characterization of the cel7 gene from the filamentous fungus, Talaromyces emersonii
journal, November 2004
- Grassick, Alice; Murray, Patrick G.; Thompson, Roisin
- European Journal of Biochemistry, Vol. 271, Issue 22, p. 4495-4506
Crystal structure of the family 7 endoglucanase I (Cel7B) from Humicola insolens at 2.2 Å resolution and identification of the catalytic nucleophile by trapping of the covalent glycosyl-enzyme intermediate
journal, October 1998
- Mackenzie, Lloyd F.; Sulzenbacher, Gerlind; Divne, Christina
- Biochemical Journal, Vol. 335, Issue 2
Crystal structures of Melanocarpus albomyces cellobiohydrolase Cel7B in complex with cello-oligomers show high flexibility in the substrate binding
journal, August 2008
- Parkkinen, Tarja; Koivula, Anu; Vehmaanperä, Jari
- Protein Science, Vol. 17, Issue 8
Family 7 cellobiohydrolases from Phanerochaete chrysosporium: crystal structure of the catalytic module of Cel7D (CBH58) at 1.32 Å resolution and homology models of the isozymes
journal, December 2001
- Muñoz, Inés G.; Ubhayasekera, Wimal; Henriksson, Hongbin
- Journal of Molecular Biology, Vol. 314, Issue 5, p. 1097-1111
Three-Dimensional Structure of the Catalytic Core of Acetylxylan Esterase from Trichoderma reesei: Insights into the Deacetylation Mechanism
journal, December 2000
- Hakulinen, Nina; Tenkanen, Maija; Rouvinen, Juha
- Journal of Structural Biology, Vol. 132, Issue 3
The X-ray crystal structure of the Trichoderma reesei family 12 endoglucanase 3, Cel12A, at 1.9 Å resolution1 1Edited by A. R. Fersht
journal, April 2001
- Sandgren, Mats; Shaw, Andrew; Ropp, Traci H.
- Journal of Molecular Biology, Vol. 308, Issue 2
Biophysical and Structural Analysis of a Novel Heme b Iron Ligation in the Flavocytochrome Cellobiose Dehydrogenase
journal, August 2003
- Rotsaert, Frederik A. J.; Hallberg, B. Martin; de Vries, Simon
- Journal of Biological Chemistry, Vol. 278, Issue 35
Substrate specificity and subsite mobility in T. aurantiacus xylanase 10A
journal, November 2001
- Lo Leggio, Leila; Kalogiannis, Stavros; Eckert, Kelvin
- FEBS Letters, Vol. 509, Issue 2
Expression and characterization of the Neurospora crassa endoglucanase GH5-1
journal, February 2011
- Sun, Jianping; Phillips, Christopher M.; Anderson, Charles T.
- Protein Expression and Purification, Vol. 75, Issue 2
Regulation of Exocellular Proteases in Neurospora crassa : Induction and Repression of Enzyme Synthesis
journal, June 1972
- Drucker, H.
- Journal of Bacteriology, Vol. 110, Issue 3
Glutaminyl cyclases unfold glutamyl cyclase activity under mild acid conditions
journal, March 2004
- Schilling, Stephan; Hoffmann, Torsten; Manhart, Susanne
- FEBS Letters, Vol. 563, Issue 1-3
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
journal, December 2009
- Tian, Chaoguang; Beeson, William T.; Iavarone, Anthony T.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 52
A comparative systems analysis of polysaccharide-elicited responses in Neurospora crassa reveals carbon source-specific cellular adaptations : Fungal polysaccharide-specific responses revealed
journal, December 2013
- Benz, J. Philipp; Chau, Bryant H.; Zheng, Diana
- Molecular Microbiology, Vol. 91, Issue 2
Quantitative Proteomic Approach for Cellulose Degradation by Neurospora crassa
journal, September 2011
- Phillips, Christopher M.; Iavarone, Anthony T.; Marletta, Michael A.
- Journal of Proteome Research, Vol. 10, Issue 9
Trifluoromethanesulfonic acid-based proteomic analysis of cell wall and secreted proteins of the ascomycetous fungi Neurospora crassa and Candida albicans
journal, October 2009
- Maddi, Abhiram; Bowman, Shaun M.; Free, Stephen J.
- Fungal Genetics and Biology, Vol. 46, Issue 10
A proteomic and genetic analysis of the Neurospora crassa conidia cell wall proteins identifies two glycosyl hydrolases involved in cell wall remodeling
journal, September 2016
- Ao, Jie; Aldabbous, Mash’el; Notaro, Marysa J.
- Fungal Genetics and Biology, Vol. 94
To protect peptide pharmaceuticals against peptidases
journal, March 2010
- Rink, R.; Arkema-Meter, A.; Baudoin, I.
- Journal of Pharmacological and Toxicological Methods, Vol. 61, Issue 2
IsoQC (QPCTL) knock-out mice suggest differential substrate conversion by glutaminyl cyclase isoenzymes
journal, January 2016
- Becker, Andreas; Eichentopf, Rico; Sedlmeier, Reinhard
- Biological Chemistry, Vol. 397, Issue 1
The isoenzyme of glutaminyl cyclase is an important regulator of monocyte infiltration under inflammatory conditions
journal, July 2011
- Cynis, Holger; Hoffmann, Torsten; Friedrich, Daniel
- EMBO Molecular Medicine, Vol. 3, Issue 9
One library to make them all: streamlining the creation of yeast libraries via a SWAp-Tag strategy
journal, February 2016
- Yofe, Ido; Weill, Uri; Meurer, Matthias
- Nature Methods, Vol. 13, Issue 4
Directed evolution of a secretory leader for the improved expression of heterologous proteins and full-length antibodies in Saccharomyces cerevisiae
journal, August 2009
- Rakestraw, J. Andy; Sazinsky, Stephen L.; Piatesi, Andrea
- Biotechnology and Bioengineering, Vol. 103, Issue 6
Purification and Characterization of Recombinant N-Terminally Pyroglutamate-Modified Amyloid-β Variants and Structural Analysis by Solution NMR Spectroscopy
journal, October 2015
- Dammers, Christina; Gremer, Lothar; Neudecker, Philipp
- PLOS ONE, Vol. 10, Issue 10
Linked Production of Pyroglutamate-Modified Proteins via Self-Cleavage of Fusion Tags with TEV Protease and Autonomous N-Terminal Cyclization with Glutaminyl Cyclase In Vivo
journal, April 2014
- Shih, Yan-Ping; Chou, Chi-Chi; Chen, Yi-Ling
- PLoS ONE, Vol. 9, Issue 4
Systems biological approaches towards understanding cellulase production by Trichoderma reesei
journal, January 2013
- Kubicek, Christian P.
- Journal of Biotechnology, Vol. 163, Issue 2
Small proteins of plant-pathogenic fungi secreted during host colonization
journal, December 2005
- Rep, Martijn
- FEMS Microbiology Letters, Vol. 253, Issue 1
On the mechanism of sensing unfolded protein in the endoplasmic reticulum
journal, December 2005
- Credle, J. J.; Finer-Moore, J. S.; Papa, F. R.
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 52
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
journal, July 2002
- Katoh, K.
- Nucleic Acids Research, Vol. 30, Issue 14
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
journal, August 2006
- Stamatakis, Alexandros
- Bioinformatics, Vol. 22, Issue 21
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
journal, June 2006
- Colot, H. V.; Park, G.; Turner, G. E.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 27
Engineering and characterization of a superfolder green fluorescent protein
journal, December 2005
- Pédelacq, Jean-Denis; Cabantous, Stéphanie; Tran, Timothy
- Nature Biotechnology, Vol. 24, Issue 1, p. 79-88
Cyclosporin A-resistance based gene placement system for Neurospora crassa
journal, May 2007
- Bardiya, Nirmala; Shiu, Patrick K. T.
- Fungal Genetics and Biology, Vol. 44, Issue 5
Identification and Characterization of LFD-2, a Predicted Fringe Protein Required for Membrane Integrity during Cell Fusion in Neurospora crassa
journal, January 2015
- Palma-Guerrero, Javier; Zhao, Jiuhai; Gonçalves, A. Pedro
- Eukaryotic Cell, Vol. 14, Issue 3
Microplate-based filter paper assay to measure total cellulase activity
journal, January 2004
- Xiao, Zhizhuang; Storms, Reginald; Tsang, Adrian
- Biotechnology and Bioengineering, Vol. 88, Issue 7
Letter to the editors
journal, November 1984
- Roepstorff, P.; Fohlman, J.
- Biological Mass Spectrometry, Vol. 11, Issue 11
The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei
journal, July 1994
- Divne, C.; Stahlberg, J.; Reinikainen, T.
- Science, Vol. 265, Issue 5171
Crystal Complex Structures Reveal How Substrate is Bound in the −4 to the +2 Binding Sites of Humicola grisea Cel12A
journal, October 2004
- Sandgren, Mats; Berglund, Gunnar I.; Shaw, Andrew
- Journal of Molecular Biology, Vol. 342, Issue 5
UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004
- Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C.
- Journal of Computational Chemistry, Vol. 25, Issue 13
Crystal structures of human glutaminyl cyclase, an enzyme responsible for protein N-terminal pyroglutamate formation
journal, August 2005
- Huang, K. -F.; Liu, Y. -L.; Cheng, W. -J.
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 37
Works referencing / citing this record:
In‐depth characterization of Trichoderma reesei cellobiohydrolase Tr Cel7A produced in Nicotiana benthamiana reveals limitations of cellulase production in plants by host‐specific post‐translational modifications
journal, August 2019
- Eerde, André; Várnai, Anikó; Jameson, John Kristian
- Plant Biotechnology Journal, Vol. 18, Issue 3