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Title: Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum

Abstract

Marinobactersp. strain MCTG268 was isolated from the cosmopolitan marine diatomSkeletonema costatumand can degrade oil hydrocarbons as sole sources of carbon and energy. Here, we present the genome sequence of this strain, which is 4,449,396 bp with 4,157 genes and an average G+C content of 57.0%.

Authors:
 [1];  [2];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3];  [3] more »;  [3] « less
  1. Heriot-Watt Univ., Edinburgh (United Kingdom)
  2. Univ. of Georgia, Athens, GA (United States). Dept. of Microbiology
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1378996
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 4; Journal Issue: 5; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., and Woyke, Tanja. Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum. United States: N. p., 2016. Web. doi:10.1128/genomeA.00937-16.
Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., & Woyke, Tanja. Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum. United States. doi:10.1128/genomeA.00937-16.
Gutierrez, Tony, Whitman, William B., Huntemann, Marcel, Copeland, Alex, Chen, Amy, Kyrpides, Nikos, Markowitz, Victor, Pillay, Manoj, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Chovatia, Mansi, Daum, Chris, Shapiro, Nicole, Cantor, Michael N., and Woyke, Tanja. Thu . "Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum". United States. doi:10.1128/genomeA.00937-16. https://www.osti.gov/servlets/purl/1378996.
@article{osti_1378996,
title = {Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum},
author = {Gutierrez, Tony and Whitman, William B. and Huntemann, Marcel and Copeland, Alex and Chen, Amy and Kyrpides, Nikos and Markowitz, Victor and Pillay, Manoj and Ivanova, Natalia and Mikhailova, Natalia and Ovchinnikova, Galina and Andersen, Evan and Pati, Amrita and Stamatis, Dimitrios and Reddy, T. B. K. and Ngan, Chew Yee and Chovatia, Mansi and Daum, Chris and Shapiro, Nicole and Cantor, Michael N. and Woyke, Tanja},
abstractNote = {Marinobactersp. strain MCTG268 was isolated from the cosmopolitan marine diatomSkeletonema costatumand can degrade oil hydrocarbons as sole sources of carbon and energy. Here, we present the genome sequence of this strain, which is 4,449,396 bp with 4,157 genes and an average G+C content of 57.0%.},
doi = {10.1128/genomeA.00937-16},
journal = {Genome Announcements},
number = 5,
volume = 4,
place = {United States},
year = {2016},
month = {9}
}

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Works referenced in this record:

Marinobacter algicola sp. nov., isolated from laboratory cultures of paralytic shellfish toxin-producing dinoflagellates
journal, March 2006

  • Green, D. H.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 3
  • DOI: 10.1099/ijs.0.63447-0

Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
journal, May 2015

  • Whitman, William B.; Woyke, Tanja; Klenk, Hans-Peter
  • Standards in Genomic Sciences, Vol. 10, Issue 1
  • DOI: 10.1186/s40793-015-0017-x

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013

  • Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
  • Nature Methods, Vol. 10, Issue 6
  • DOI: 10.1038/nmeth.2474

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
journal, October 2014

  • Reddy, T. B. K.; Thomas, Alex D.; Stamatis, Dimitri
  • Nucleic Acids Research, Vol. 43, Issue D1
  • DOI: 10.1093/nar/gku950

Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010


GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010

  • Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
  • Nature Methods, Vol. 7, Issue 6
  • DOI: 10.1038/nmeth.1457

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
journal, October 2015

  • Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos
  • Standards in Genomic Sciences, Vol. 10, Issue 1
  • DOI: 10.1186/s40793-015-0077-y

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997


IMG ER: a system for microbial genome annotation expert review and curation
journal, June 2009