skip to main content
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China

Abstract

The draft genomes ofThermus  tengchongensisYIM 77401 andT. caliditerraeYIM 77777 are 2,562,314 and 2,218,114 bp and encode 2,726 and 2,305 predicted genes, respectively. Gene content and growth experiments demonstrate broad metabolic capacity, including starch hydrolysis, thiosulfate oxidation, arsenite oxidation, incomplete denitrification, and polysulfide reduction.

Authors:
 [1];  [2];  [3];  [3];  [1];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4] more »;  [5];  [4];  [6];  [7] « less
  1. Univ. of Nevada, Las Vegas, NV (United States). School of Life Sciences
  2. Univ. of Nevada, Las Vegas, NV (United States). School of Life Sciences; Sun Yat-sen Univ., Guangzhou (China). State Key Lab. of Biocontrol and Guangdong Provincial Key Lab. of Plant Resources; Yunnan Univ., Kunming (China). Yunnan Inst. of Microbiology
  3. Yunnan Univ., Kunming (China). Yunnan Inst. of Microbiology
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  5. Univ. of Nevada, Las Vegas, NV (United States). School of Life Sciences; SWCA Environmental Consultants, Las Vegas, NV (United States)
  6. Sun Yat-sen Univ., Guangzhou (China). State Key Lab. of Biocontrol and Guangdong Provincial Key Lab. of Plant Resources; Yunnan Univ., Kunming (China). Yunnan Inst. of Microbiology
  7. Univ. of Nevada, Las Vegas, NV (United States). School of Life Sciences, Nevada Inst. of Personalized Medicine
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1378990
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 4; Journal Issue: 2; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Mefferd, Chrisabelle C., Zhou, En-Min, Yu, Tian-Tian, Ming, Hong, Murugapiran, Senthil K., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Duffy, Kecia, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Williams, Amanda J., Woyke, Tanja, Li, Wen-Jun, and Hedlund, Brian P. High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China. United States: N. p., 2016. Web. doi:10.1128/genomeA.00312-16.
Mefferd, Chrisabelle C., Zhou, En-Min, Yu, Tian-Tian, Ming, Hong, Murugapiran, Senthil K., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Duffy, Kecia, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Williams, Amanda J., Woyke, Tanja, Li, Wen-Jun, & Hedlund, Brian P. High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China. United States. doi:10.1128/genomeA.00312-16.
Mefferd, Chrisabelle C., Zhou, En-Min, Yu, Tian-Tian, Ming, Hong, Murugapiran, Senthil K., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Duffy, Kecia, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Williams, Amanda J., Woyke, Tanja, Li, Wen-Jun, and Hedlund, Brian P. Thu . "High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China". United States. doi:10.1128/genomeA.00312-16. https://www.osti.gov/servlets/purl/1378990.
@article{osti_1378990,
title = {High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China},
author = {Mefferd, Chrisabelle C. and Zhou, En-Min and Yu, Tian-Tian and Ming, Hong and Murugapiran, Senthil K. and Huntemann, Marcel and Clum, Alicia and Pillay, Manoj and Palaniappan, Krishnaveni and Varghese, Neha and Mikhailova, Natalia and Stamatis, Dimitrios and Reddy, T. B. K. and Ngan, Chew Yee and Daum, Chris and Duffy, Kecia and Shapiro, Nicole and Markowitz, Victor and Ivanova, Natalia and Kyrpides, Nikos and Williams, Amanda J. and Woyke, Tanja and Li, Wen-Jun and Hedlund, Brian P.},
abstractNote = {The draft genomes ofThermus  tengchongensisYIM 77401 andT. caliditerraeYIM 77777 are 2,562,314 and 2,218,114 bp and encode 2,726 and 2,305 predicted genes, respectively. Gene content and growth experiments demonstrate broad metabolic capacity, including starch hydrolysis, thiosulfate oxidation, arsenite oxidation, incomplete denitrification, and polysulfide reduction.},
doi = {10.1128/genomeA.00312-16},
journal = {Genome Announcements},
number = 2,
volume = 4,
place = {United States},
year = {2016},
month = {4}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Save / Share:

Works referenced in this record:

Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01
journal, November 2011

  • Gounder, Kamini; Brzuszkiewicz, Elzbieta; Liesegang, Heiko
  • BMC Genomics, Vol. 12, Issue 1
  • DOI: 10.1186/1471-2164-12-577

Thermus caliditerrae sp. nov., a novel thermophilic species isolated from a geothermal area
journal, October 2013

  • Ming, H.; Yin, Y. -R.; Li, S.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 2
  • DOI: 10.1099/ijs.0.056838-0

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013

  • Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
  • Nature Methods, Vol. 10, Issue 6
  • DOI: 10.1038/nmeth.2474

Isolation and characterization of a mixotrophic sulfur-oxidizing Thermus scotoductus
journal, February 2001

  • Skirnisdottir, Sigurlaug; Hreggvidsson, Gudmundur O.; Holst, Olle
  • Extremophiles, Vol. 5, Issue 1
  • DOI: 10.1007/s007920000172

IMG ER: a system for microbial genome annotation expert review and curation
journal, June 2009


Prokaryotic sulfur oxidation
journal, June 2005

  • Friedrich, Cornelius G.; Bardischewsky, Frank; Rother, Dagmar
  • Current Opinion in Microbiology, Vol. 8, Issue 3
  • DOI: 10.1016/j.mib.2005.04.005

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
journal, October 2015

  • Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos
  • Standards in Genomic Sciences, Vol. 10, Issue 1
  • DOI: 10.1186/s40793-015-0077-y

Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling
journal, February 2013

  • Murugapiran, Senthil K.; Huntemann, Marcel; Wei, Chia-Lin
  • Standards in Genomic Sciences, Vol. 7, Issue 3
  • DOI: 10.4056/sigs.3667269

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010

  • Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
  • Nature Methods, Vol. 7, Issue 6
  • DOI: 10.1038/nmeth.1457

Hundreds of Circular Novel Plasmids and DNA Elements Identified in a Rat Cecum Metamobilome
journal, February 2014


IMG 4 version of the integrated microbial genomes comparative analysis system
journal, October 2013

  • Markowitz, Victor M.; Chen, I-Min A.; Palaniappan, Krishna
  • Nucleic Acids Research, Vol. 42, Issue D1
  • DOI: 10.1093/nar/gkt963

IMG: the integrated microbial genomes database and comparative analysis system
journal, December 2011

  • Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K.
  • Nucleic Acids Research, Vol. 40, Issue D1
  • DOI: 10.1093/nar/gkr1044