DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Density Functional Theory Study of Spirodienone Stereoisomers in Lignin

Abstract

The spirodienone structure in lignin is a relatively recent discovery, and it has been found to occur in lignin of various plant species at concentrations of ~3%, which is sufficiently high to be important for better understanding of its properties and reactivity. The cyclic structure, with a ..beta..-1 bond, has been proposed to be a precursor for acyclic ..beta..-1 linkages in lignin. Previous analytical work has revealed the presence, but not the absolute configuration, of two stereoisomeric forms of spirodienone. The objective of the current work was to determine if there are thermodynamic differences that could help identify the experimentally observed stereoisomers. Results from density functional theory calculations reveal the presence of clusters of stereoisomers with varying stability that may be of use in narrowing the list of possible structures. Furthermore, the bond dissociation enthalpy of the cyclic ring exhibited a particularly high value for the C-O cleavage reaction relative to more conventional ether bonds in lignin, perhaps due to limited electron delocalization possibilities.

Authors:
ORCiD logo [1];  [2]; ORCiD logo [2];  [2]
  1. USDA Forest Service, Auburn, AL (United States). Southern Research Station
  2. National Renewable Energy Lab. (NREL), Golden, CO (United States)
Publication Date:
Research Org.:
National Renewable Energy Laboratory (NREL), Golden, CO (United States)
Sponsoring Org.:
USDOE Office of Energy Efficiency and Renewable Energy (EERE)
OSTI Identifier:
1378887
Report Number(s):
NREL/JA-5100-69117
Journal ID: ISSN 2168-0485
Grant/Contract Number:  
AC36-08GO28308
Resource Type:
Accepted Manuscript
Journal Name:
ACS Sustainable Chemistry & Engineering
Additional Journal Information:
Journal Volume: 5; Journal Issue: 8; Journal ID: ISSN 2168-0485
Publisher:
American Chemical Society (ACS)
Country of Publication:
United States
Language:
English
Subject:
09 BIOMASS FUELS; bond dissociation energy; density functional theory; lignin; spirodienone; stereoisomerism

Citation Formats

Elder, Thomas, Berstis, Laura, Beckham, Gregg T., and Crowley, Michael F. Density Functional Theory Study of Spirodienone Stereoisomers in Lignin. United States: N. p., 2017. Web. doi:10.1021/acssuschemeng.7b01373.
Elder, Thomas, Berstis, Laura, Beckham, Gregg T., & Crowley, Michael F. Density Functional Theory Study of Spirodienone Stereoisomers in Lignin. United States. https://doi.org/10.1021/acssuschemeng.7b01373
Elder, Thomas, Berstis, Laura, Beckham, Gregg T., and Crowley, Michael F. Wed . "Density Functional Theory Study of Spirodienone Stereoisomers in Lignin". United States. https://doi.org/10.1021/acssuschemeng.7b01373. https://www.osti.gov/servlets/purl/1378887.
@article{osti_1378887,
title = {Density Functional Theory Study of Spirodienone Stereoisomers in Lignin},
author = {Elder, Thomas and Berstis, Laura and Beckham, Gregg T. and Crowley, Michael F.},
abstractNote = {The spirodienone structure in lignin is a relatively recent discovery, and it has been found to occur in lignin of various plant species at concentrations of ~3%, which is sufficiently high to be important for better understanding of its properties and reactivity. The cyclic structure, with a ..beta..-1 bond, has been proposed to be a precursor for acyclic ..beta..-1 linkages in lignin. Previous analytical work has revealed the presence, but not the absolute configuration, of two stereoisomeric forms of spirodienone. The objective of the current work was to determine if there are thermodynamic differences that could help identify the experimentally observed stereoisomers. Results from density functional theory calculations reveal the presence of clusters of stereoisomers with varying stability that may be of use in narrowing the list of possible structures. Furthermore, the bond dissociation enthalpy of the cyclic ring exhibited a particularly high value for the C-O cleavage reaction relative to more conventional ether bonds in lignin, perhaps due to limited electron delocalization possibilities.},
doi = {10.1021/acssuschemeng.7b01373},
journal = {ACS Sustainable Chemistry & Engineering},
number = 8,
volume = 5,
place = {United States},
year = {Wed Jun 28 00:00:00 EDT 2017},
month = {Wed Jun 28 00:00:00 EDT 2017}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 12 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Lignin Biosynthesis and Structure
journal, May 2010

  • Vanholme, R.; Demedts, B.; Morreel, K.
  • Plant Physiology, Vol. 153, Issue 3, p. 895-905
  • DOI: 10.1104/pp.110.155119

Dibenzodioxocins; a novel type of linkage in softwood lignins
journal, January 1995


Synthesis and crystal structure determination of model compounds for the dibenzodioxocine structure occurring in wood lignins
journal, January 1996

  • Karhunen, Pirkko; Rummakko, Petteri; Pajunen, Aarne
  • Journal of the Chemical Society, Perkin Transactions 1, Issue 18
  • DOI: 10.1039/p19960002303

The behaviour of dibenzodioxocin structures in lignin during alkaline pulping processes
journal, May 1999


A polymer of caffeyl alcohol in plant seeds
journal, January 2012

  • Chen, F.; Tobimatsu, Y.; Havkin-Frenkel, D.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 5
  • DOI: 10.1073/pnas.1120992109

Novel seed coat lignins in the Cactaceae: structure, distribution and implications for the evolution of lignin diversity
journal, November 2012

  • Chen, Fang; Tobimatsu, Yuki; Jackson, Lisa
  • The Plant Journal, Vol. 73, Issue 2
  • DOI: 10.1111/tpj.12012

Coexistence but Independent Biosynthesis of Catechyl and Guaiacyl/Syringyl Lignin Polymers in Seed Coats
journal, July 2013


NMR Studies on the Occurrence of Spirodienone Structures in Lignins
journal, April 2006

  • Zhang, Liming; Gellerstedt, Göran; Ralph, John
  • Journal of Wood Chemistry and Technology, Vol. 26, Issue 1
  • DOI: 10.1080/02773810600580271

Structural Characterization of the Lignins from the Green and Yellow Bamboo of Bamboo Culm ( Phyllostachys pubescens )
journal, November 2015


Physicochemical characterization of lignin fractions sequentially isolated from bamboo (Dendrocalamus brandisii) with hot water and alkaline ethanol solution
journal, February 2012

  • Shi, Zheng‐Jun; Xiao, Ling‐Ping; Deng, Jia
  • Journal of Applied Polymer Science, Vol. 125, Issue 4, p. 3290-3301
  • DOI: 10.1002/app.36580

Physicochemical characterization of ethanol organosolv lignin (EOL) from Eucalyptus globulus: Effect of extraction conditions on the molecular structure
journal, December 2014


Lignin Composition and Structure in Young versus Adult Eucalyptus globulus Plants
journal, November 2010

  • Rencoret, Jorge; Gutiérrez, Ana; Nieto, Lidia
  • Plant Physiology, Vol. 155, Issue 2
  • DOI: 10.1104/pp.110.167254

Structural characterization of milled wood lignins from different eucalypt species
journal, September 2008

  • Rencoret, Jorge; Marques, Gisela; Gutiérrez, Ana
  • Holzforschung, Vol. 62, Issue 5
  • DOI: 10.1515/HF.2008.096

Quantitative Characterization of a Hardwood Milled Wood Lignin by Nuclear Magnetic Resonance Spectroscopy
journal, December 2005

  • Capanema, Ewellyn A.; Balakshin, Mikhail Yu.; Kadla, John F.
  • Journal of Agricultural and Food Chemistry, Vol. 53, Issue 25, p. 9639-9649
  • DOI: 10.1021/jf0515330

Structural Characterization of Lignin from Triploid of Populus tomentosa Carr.
journal, June 2011

  • Yuan, Tong-Qi; Sun, Shao-Ni; Xu, Feng
  • Journal of Agricultural and Food Chemistry, Vol. 59, Issue 12
  • DOI: 10.1021/jf2003865

Retracted: Isolation and chemical structure characterization of enzymatic lignin from Populus deltoides wood
journal, May 2010

  • Abdulkhani, Ali; Karimi, Alinaghi; Mirshokraie, Ahmad
  • Journal of Applied Polymer Science, Vol. 118, Issue 1
  • DOI: 10.1002/app.32428

Computational study of bond dissociation enthalpies for lignin model compounds: β-5 Arylcoumaran
journal, August 2012


Bond Dissociation Enthalpies of a Dibenzodioxocin Lignin Model Compound
journal, July 2013


Bond Dissociation Enthalpies of a Pinoresinol Lignin Model Compound
journal, January 2014


Coupling and Reactions of 5-Hydroxyconiferyl Alcohol in Lignin Formation
journal, June 2016

  • Elder, Thomas; Berstis, Laura; Beckham, Gregg T.
  • Journal of Agricultural and Food Chemistry, Vol. 64, Issue 23
  • DOI: 10.1021/acs.jafc.6b02234

Radical Nature of C-Lignin
journal, May 2016


Depolymerization Pathways for Branching Lignin Spirodienone Units Revealed with ab Initio Steered Molecular Dynamics
journal, January 2017

  • Mar, Brendan D.; Kulik, Heather J.
  • The Journal of Physical Chemistry A, Vol. 121, Issue 2
  • DOI: 10.1021/acs.jpca.6b11414

Gaussian‐1 theory: A general procedure for prediction of molecular energies
journal, May 1989

  • Pople, John A.; Head‐Gordon, Martin; Fox, Douglas J.
  • The Journal of Chemical Physics, Vol. 90, Issue 10
  • DOI: 10.1063/1.456415

Exploring the Limit of Accuracy of the Global Hybrid Meta Density Functional for Main-Group Thermochemistry, Kinetics, and Noncovalent Interactions
journal, October 2008

  • Zhao, Yan; Truhlar, Donald G.
  • Journal of Chemical Theory and Computation, Vol. 4, Issue 11
  • DOI: 10.1021/ct800246v

Probing Substituent Effects in Aryl−Aryl Interactions Using Stereoselective Diels−Alder Cycloadditions
journal, March 2010

  • Wheeler, Steven E.; McNeil, Anne J.; Müller, Peter
  • Journal of the American Chemical Society, Vol. 132, Issue 10
  • DOI: 10.1021/ja903653j

Quest for a universal density functional: the accuracy of density functionals across a broad spectrum of databases in chemistry and physics
journal, March 2014

  • Peverati, Roberto; Truhlar, Donald G.
  • Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 372, Issue 2011
  • DOI: 10.1098/rsta.2012.0476

Assessment of the Performance of the M05−2X and M06−2X Exchange-Correlation Functionals for Noncovalent Interactions in Biomolecules
journal, November 2008

  • Hohenstein, Edward G.; Chill, Samuel T.; Sherrill, C. David
  • Journal of Chemical Theory and Computation, Vol. 4, Issue 12
  • DOI: 10.1021/ct800308k

Applications and validations of the Minnesota density functionals
journal, January 2011


Suppression of 4-Coumarate-CoA Ligase in the Coniferous Gymnosperm Pinus radiata
journal, October 2008

  • Wagner, Armin; Donaldson, Lloyd; Kim, Hoon
  • Plant Physiology, Vol. 149, Issue 1
  • DOI: 10.1104/pp.108.125765

The Effects on Lignin Structure of Overexpression of Ferulate 5-Hydroxylase in Hybrid Poplar 1
journal, April 2009

  • Stewart, Jaclyn J.; Akiyama, Takuya; Chapple, Clint
  • Plant Physiology, Vol. 150, Issue 2
  • DOI: 10.1104/pp.109.137059

Works referencing / citing this record:

Enzymatic Oxidation of Lignin: Challenges and Barriers Toward Practical Applications
journal, November 2019