High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
Abstract
© 2015 De Meyer et al. Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N 2 -fixing root nodule of Lebeckia ambigua collected in Nieuwoudtville, Western Cape of South Africa, in October 2007. This plant persists in infertile, acidic and deep sandy soils, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. Here we describe the features of Burkholderia sp. strain WSM4176, which represents a potential inoculant quality strain for L. ambigua, together with sequence and annotation. The 9,065,247 bp high-quality-draft genome is arranged in 13 scaffolds of 65 contigs, contains 8369 protein-coding genes and 128 RNA-only encoding genes, and is part of the GEBA-RNB project proposal (Project ID 882).
- Authors:
-
- Murdoch Univ. (Australia)
- DOE Joint Genome Inst., Walnut Creek, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
- Murdoch Univ. (Australia); Dept. of Agriculture and Food, Western Australia (Australia)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1256936
- Alternate Identifier(s):
- OSTI ID: 1378594
- Grant/Contract Number:
- AC02-05CH11231; AC52-07NA27344; AC02-06NA25396
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Root-nodule bacteria; Nitrogen fixation; Rhizobia; Betaproteobacteria; GEBA-RNB
Citation Formats
De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos, Yates, Ron, Howieson, John, and Reeve, Wayne. High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176. United States: N. p., 2015.
Web. doi:10.1186/s40793-015-0072-3.
De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos, Yates, Ron, Howieson, John, & Reeve, Wayne. High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176. United States. https://doi.org/10.1186/s40793-015-0072-3
De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos, Yates, Ron, Howieson, John, and Reeve, Wayne. Fri .
"High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176". United States. https://doi.org/10.1186/s40793-015-0072-3. https://www.osti.gov/servlets/purl/1256936.
@article{osti_1256936,
title = {High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176},
author = {De Meyer, Sofie E. and Tian, Rui and Seshadri, Rekha and Reddy, TBK and Markowitz, Victor and Ivanova, Natalia and Pati, Amrita and Woyke, Tanja and Kyrpides, Nikos and Yates, Ron and Howieson, John and Reeve, Wayne},
abstractNote = {© 2015 De Meyer et al. Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N 2 -fixing root nodule of Lebeckia ambigua collected in Nieuwoudtville, Western Cape of South Africa, in October 2007. This plant persists in infertile, acidic and deep sandy soils, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. Here we describe the features of Burkholderia sp. strain WSM4176, which represents a potential inoculant quality strain for L. ambigua, together with sequence and annotation. The 9,065,247 bp high-quality-draft genome is arranged in 13 scaffolds of 65 contigs, contains 8369 protein-coding genes and 128 RNA-only encoding genes, and is part of the GEBA-RNB project proposal (Project ID 882).},
doi = {10.1186/s40793-015-0072-3},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {Fri Oct 16 00:00:00 EDT 2015},
month = {Fri Oct 16 00:00:00 EDT 2015}
}
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Works referencing / citing this record:
Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov.
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