DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: An observational constraint on stomatal function in forests: evaluating coupled carbon and water vapor exchange with carbon isotopes in the Community Land Model (CLM4.5)

Abstract

Land surface models are useful tools to quantify contemporary and future climate impact on terrestrial carbon cycle processes, provided they can be appropriately constrained and tested with observations. Stable carbon isotopes of CO2 offer the potential to improve model representation of the coupled carbon and water cycles because they are strongly influenced by stomatal function. Recently, a representation of stable carbon isotope discrimination was incorporated into the Community Land Model component of the Community Earth System Model. Here, we tested the model's capability to simulate whole-forest isotope discrimination in a subalpine conifer forest at Niwot Ridge, Colorado, USA. We distinguished between isotopic behavior in response to a decrease of δ13C within atmospheric CO2 (Suess effect) vs. photosynthetic discrimination (Δcanopy), by creating a site-customized atmospheric CO2 and δ13C of CO2 time series. We implemented a seasonally varying Vcmax model calibration that best matched site observations of net CO2 carbon exchange, latent heat exchange, and biomass. The model accurately simulated observed δ13C of needle and stem tissue, but underestimated the δ13C of bulk soil carbon by 1–2 ‰. The model overestimated the multiyear (2006–2012) average Δcanopy relative to prior data-based estimates by 2–4 ‰. The amplitude of the average seasonal cycle ofmore » Δcanopy (i.e., higher in spring/fall as compared to summer) was correctly modeled but only when using a revised, fully coupled An-gs (net assimilation rate, stomatal conductance) version of the model in contrast to the partially coupled An-gs version used in the default model. The model attributed most of the seasonal variation in discrimination to Asub>n, whereas interannual variation in simulated Δcanopy during the summer months was driven by stomatal response to vapor pressure deficit (VPD). The model simulated a 10 % increase in both photosynthetic discrimination and water-use efficiency (WUE) since 1850 which is counter to established relationships between discrimination and WUE. The isotope observations used here to constrain CLM suggest (1) the model overestimated stomatal conductance and (2) the default CLM approach to representing nitrogen limitation (partially coupled model) was not capable of reproducing observed trends in discrimination. These findings demonstrate that isotope observations can provide important information related to stomatal function driven by environmental stress from VPD and nitrogen limitation. Future versions of CLM that incorporate carbon isotope discrimination are likely to benefit from explicit inclusion of mesophyll conductance.« less

Authors:
; ; ORCiD logo; ORCiD logo; ; ORCiD logo; ORCiD logo
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Univ. of Utah, Salt Lake City, UT (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1328465
Alternate Identifier(s):
OSTI ID: 1377494; OSTI ID: 1425449; OSTI ID: 1425450; OSTI ID: 1425451
Grant/Contract Number:  
SC0010625; AC02-05CH11231
Resource Type:
Published Article
Journal Name:
Biogeosciences (Online)
Additional Journal Information:
Journal Name: Biogeosciences (Online) Journal Volume: 13 Journal Issue: 18; Journal ID: ISSN 1726-4189
Publisher:
Copernicus Publications, EGU
Country of Publication:
Germany
Language:
English
Subject:
58 GEOSCIENCES; 59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Raczka, Brett, Duarte, Henrique F., Koven, Charles D., Ricciuto, Daniel, Thornton, Peter E., Lin, John C., and Bowling, David R. An observational constraint on stomatal function in forests: evaluating coupled carbon and water vapor exchange with carbon isotopes in the Community Land Model (CLM4.5). Germany: N. p., 2016. Web. doi:10.5194/bg-13-5183-2016.
Raczka, Brett, Duarte, Henrique F., Koven, Charles D., Ricciuto, Daniel, Thornton, Peter E., Lin, John C., & Bowling, David R. An observational constraint on stomatal function in forests: evaluating coupled carbon and water vapor exchange with carbon isotopes in the Community Land Model (CLM4.5). Germany. https://doi.org/10.5194/bg-13-5183-2016
Raczka, Brett, Duarte, Henrique F., Koven, Charles D., Ricciuto, Daniel, Thornton, Peter E., Lin, John C., and Bowling, David R. Mon . "An observational constraint on stomatal function in forests: evaluating coupled carbon and water vapor exchange with carbon isotopes in the Community Land Model (CLM4.5)". Germany. https://doi.org/10.5194/bg-13-5183-2016.
@article{osti_1328465,
title = {An observational constraint on stomatal function in forests: evaluating coupled carbon and water vapor exchange with carbon isotopes in the Community Land Model (CLM4.5)},
author = {Raczka, Brett and Duarte, Henrique F. and Koven, Charles D. and Ricciuto, Daniel and Thornton, Peter E. and Lin, John C. and Bowling, David R.},
abstractNote = {Land surface models are useful tools to quantify contemporary and future climate impact on terrestrial carbon cycle processes, provided they can be appropriately constrained and tested with observations. Stable carbon isotopes of CO2 offer the potential to improve model representation of the coupled carbon and water cycles because they are strongly influenced by stomatal function. Recently, a representation of stable carbon isotope discrimination was incorporated into the Community Land Model component of the Community Earth System Model. Here, we tested the model's capability to simulate whole-forest isotope discrimination in a subalpine conifer forest at Niwot Ridge, Colorado, USA. We distinguished between isotopic behavior in response to a decrease of δ13C within atmospheric CO2 (Suess effect) vs. photosynthetic discrimination (Δcanopy), by creating a site-customized atmospheric CO2 and δ13C of CO2 time series. We implemented a seasonally varying Vcmax model calibration that best matched site observations of net CO2 carbon exchange, latent heat exchange, and biomass. The model accurately simulated observed δ13C of needle and stem tissue, but underestimated the δ13C of bulk soil carbon by 1–2 ‰. The model overestimated the multiyear (2006–2012) average Δcanopy relative to prior data-based estimates by 2–4 ‰. The amplitude of the average seasonal cycle of Δcanopy (i.e., higher in spring/fall as compared to summer) was correctly modeled but only when using a revised, fully coupled An-gs (net assimilation rate, stomatal conductance) version of the model in contrast to the partially coupled An-gs version used in the default model. The model attributed most of the seasonal variation in discrimination to Asub>n, whereas interannual variation in simulated Δcanopy during the summer months was driven by stomatal response to vapor pressure deficit (VPD). The model simulated a 10 % increase in both photosynthetic discrimination and water-use efficiency (WUE) since 1850 which is counter to established relationships between discrimination and WUE. The isotope observations used here to constrain CLM suggest (1) the model overestimated stomatal conductance and (2) the default CLM approach to representing nitrogen limitation (partially coupled model) was not capable of reproducing observed trends in discrimination. These findings demonstrate that isotope observations can provide important information related to stomatal function driven by environmental stress from VPD and nitrogen limitation. Future versions of CLM that incorporate carbon isotope discrimination are likely to benefit from explicit inclusion of mesophyll conductance.},
doi = {10.5194/bg-13-5183-2016},
journal = {Biogeosciences (Online)},
number = 18,
volume = 13,
place = {Germany},
year = {Mon Sep 19 00:00:00 EDT 2016},
month = {Mon Sep 19 00:00:00 EDT 2016}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.5194/bg-13-5183-2016

Citation Metrics:
Cited by: 31 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Forest water use and water use efficiency at elevated CO 2 : a model-data intercomparison at two contrasting temperate forest FACE sites
journal, March 2013

  • De Kauwe, Martin G.; Medlyn, Belinda E.; Zaehle, Sönke
  • Global Change Biology, Vol. 19, Issue 6
  • DOI: 10.1111/gcb.12164

Carbon isotope discrimination indicates improving water-use efficiency of trees in northern Eurasia over the last 100 years
journal, December 2004


Pulse-labelling trees to study carbon allocation dynamics: a review of methods, current knowledge and future prospects
journal, June 2012


Modelling assimilation and intercellular CO2 from measured conductance: a synthesis of approaches
journal, December 2000


Increased water-use efficiency during the 20th century did not translate into enhanced tree growth: Tree growth in the 20th century
journal, November 2010


Influence of carbon-nitrogen cycle coupling on land model response to CO 2 fertilization and climate variability : INFLUENCE OF CARBON-NITROGEN COUPLING
journal, December 2007

  • Thornton, Peter E.; Lamarque, Jean-François; Rosenbloom, Nan A.
  • Global Biogeochemical Cycles, Vol. 21, Issue 4
  • DOI: 10.1029/2006GB002868

Seasonal pattern of regional carbon balance in the central Rocky Mountains from surface and airborne measurements
journal, January 2011

  • Desai, Ankur R.; Moore, David J. P.; Ahue, William K. M.
  • Journal of Geophysical Research, Vol. 116, Issue G4
  • DOI: 10.1029/2011JG001655

Novel applications of carbon isotopes in atmospheric CO 2 : what can atmospheric measurements teach us about processes in the biosphere?
journal, January 2011


Longer growing seasons lead to less carbon sequestration by a subalpine forest
journal, February 2010


Analysis of Factors Controlling Soil Organic Matter Levels in Great Plains Grasslands1
journal, January 1987


On the Relationship Between Carbon Isotope Discrimination and the Intercellular Carbon Dioxide Concentration in Leaves
journal, January 1982

  • Farquhar, Gd; O'Leary, Mh; Berry, Ja
  • Functional Plant Biology, Vol. 9, Issue 2
  • DOI: 10.1071/PP9820121

Spatial variability and temporal trends in water-use efficiency of European forests
journal, September 2014

  • Saurer, Matthias; Spahni, Renato; Frank, David C.
  • Global Change Biology, Vol. 20, Issue 12
  • DOI: 10.1111/gcb.12717

Carbon sequestration studied in western U.S. mountains
journal, January 2002

  • Schimel, David; Kittel, Timothy G. F.; Running, Steven
  • Eos, Transactions American Geophysical Union, Vol. 83, Issue 40
  • DOI: 10.1029/2002EO000314

A Bayesian calibration of a simple carbon cycle model: The role of observations in estimating and reducing uncertainty: BAYESIAN CARBON CYCLE MODEL CALIBRATION
journal, June 2008

  • Ricciuto, Daniel M.; Davis, Kenneth J.; Keller, Klaus
  • Global Biogeochemical Cycles, Vol. 22, Issue 2
  • DOI: 10.1029/2006GB002908

Water-use efficiency and transpiration across European forests during the Anthropocene
journal, May 2015

  • Frank, D. C.; Poulter, B.; Saurer, M.
  • Nature Climate Change, Vol. 5, Issue 6
  • DOI: 10.1038/nclimate2614

High temporal resolution tracing of photosynthate carbon from the tree canopy to forest soil microorganisms
journal, October 2007


A revised 1000 year atmospheric δ 13 C-CO 2 record from Law Dome and South Pole, Antarctica : 1000 YEARS OF ATMOSPHERIC
journal, August 2013

  • Rubino, M.; Etheridge, D. M.; Trudinger, C. M.
  • Journal of Geophysical Research: Atmospheres, Vol. 118, Issue 15
  • DOI: 10.1002/jgrd.50668

An improved isotopic method for partitioning net ecosystem–atmosphere CO2 exchange
journal, December 2015


Measuring and modeling ecosystem photosynthesis and the carbon isotope composition of ecosystem-respired CO2 in three boreal coniferous forests
journal, February 2012


Canopy uptake of atmospheric N deposition at a conifer forest: Part II- response of chlorophyll fluorescence and gas exchange parameters
journal, January 2007


Improving the Numerical Solution of Soil Moisture–Based Richards Equation for Land Models with a Deep or Shallow Water Table
journal, February 2009


Stable carbon isotope ratio of tree leaves, boles and fine litter in a tropical forest in Rondônia, Brazil
journal, April 1998


Environmental and physiological determinants of carbon isotope discrimination in terrestrial plants
journal, July 2013

  • Cernusak, Lucas A.; Ubierna, Nerea; Winter, Klaus
  • New Phytologist, Vol. 200, Issue 4
  • DOI: 10.1111/nph.12423

Sensitivity of plants to changing atmospheric CO 2 concentration: from the geological past to the next century
journal, January 2013

  • Franks, Peter J.; Adams, Mark A.; Amthor, Jeffrey S.
  • New Phytologist, Vol. 197, Issue 4
  • DOI: 10.1111/nph.12104

Carbon isotopes in terrestrial ecosystem pools and CO 2 fluxes
journal, April 2008


Photosynthetic capacity and light harvesting efficiency during the winter-to-spring transition in subalpine conifers
journal, October 2006


Soil carbon stocks in experimental mesocosms are dependent on the rate of labile carbon, nitrogen and phosphorus inputs to soils
journal, December 2008


Carbon sequestration in a high-elevation, subalpine forest
journal, May 2002


Ecological processes dominate the 13 C land disequilibrium in a Rocky Mountain subalpine forest : Niwot Ridge 13C land disequilibrium
journal, April 2014

  • Bowling, D. R.; Ballantyne, A. P.; Miller, J. B.
  • Global Biogeochemical Cycles, Vol. 28, Issue 4
  • DOI: 10.1002/2013GB004686

Increase in forest water-use efficiency as atmospheric carbon dioxide concentrations rise
journal, July 2013

  • Keenan, Trevor F.; Hollinger, David Y.; Bohrer, Gil
  • Nature, Vol. 499, Issue 7458
  • DOI: 10.1038/nature12291

Tree-ring δ 13 C tracks flux tower ecosystem productivity estimates in a NE temperate forest
journal, July 2014

  • Belmecheri, Soumaya; Maxwell, R. Stockton; Taylor, Alan H.
  • Environmental Research Letters, Vol. 9, Issue 7
  • DOI: 10.1088/1748-9326/9/7/074011

Biosphere model simulations of interannual variability in terrestrial 13 C/ 12 C exchange : TERRESTRIAL
journal, July 2013

  • van der Velde, I. R.; Miller, J. B.; Schaefer, K.
  • Global Biogeochemical Cycles, Vol. 27, Issue 3
  • DOI: 10.1002/gbc.20048

Carbon Isotope Ratios in Belowground Carbon Cycle Processes
journal, April 2000


A critical appraisal of a combined stomatal-photosynthesis model for C3 plants
journal, April 1995


Spatial and temporal controls of soil respiration rate in a high-elevation, subalpine forest
journal, April 2003


A 1000-year high precision record of δ 13 C in atmospheric CO 2
journal, January 1999

  • Francey, R. J.; Allison, C. E.; Etheridge, D. M.
  • Tellus B: Chemical and Physical Meteorology, Vol. 51, Issue 2
  • DOI: 10.3402/tellusb.v51i2.16269

Evaluating the Community Land Model in a pine stand with shading manipulations and 13 CO 2 labeling
journal, January 2016


Carbon allocation and carbon isotope fluxes in the plant-soil-atmosphere continuum: a review
journal, January 2011


Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: a model that includes a laminar boundary layer
journal, April 1991

  • Collatz, G. James; Ball, J. Timothy; Grivet, Cyril
  • Agricultural and Forest Meteorology, Vol. 54, Issue 2-4
  • DOI: 10.1016/0168-1923(91)90002-8

Monitoring the isotopic composition of atmospheric CO 2 : Measurements from the NOAA Global Air Sampling Network
journal, November 1996

  • Trolier, M.; White, J. W. C.; Tans, P. P.
  • Journal of Geophysical Research: Atmospheres, Vol. 101, Issue D20
  • DOI: 10.1029/96JD02363

Tobacco aquaporin NtAQP1 is involved in mesophyll conductance to CO 2 in vivo
journal, November 2006


Simulations show decreasing carbon stocks and potential for carbon emissions in Rocky Mountain forests over the next century
journal, July 2010

  • Boisvenue, Céline; Running, Steven W.
  • Ecological Applications, Vol. 20, Issue 5
  • DOI: 10.1890/09-0504.1

Evaluation of 11 terrestrial carbon-nitrogen cycle models against observations from two temperate Free-Air CO 2 Enrichment studies
journal, January 2014

  • Zaehle, Sönke; Medlyn, Belinda E.; De Kauwe, Martin G.
  • New Phytologist, Vol. 202, Issue 3
  • DOI: 10.1111/nph.12697

Carbon–Concentration and Carbon–Climate Feedbacks in CMIP5 Earth System Models
journal, August 2013

  • Arora, Vivek K.; Boer, George J.; Friedlingstein, Pierre
  • Journal of Climate, Vol. 26, Issue 15
  • DOI: 10.1175/JCLI-D-12-00494.1

Climate and interannual variability of the atmosphere-biosphere 13 CO 2 flux : ATMOSPHERE-BIOSPHERE
journal, January 2003

  • Scholze, M.; Kaplan, J. O.; Knorr, W.
  • Geophysical Research Letters, Vol. 30, Issue 2
  • DOI: 10.1029/2002GL015631

Modeling and measuring the effects of disturbance history and climate on carbon and water budgets in evergreen needleleaf forests
journal, December 2002


Mesophyll conductance to CO 2 : current knowledge and future prospects
journal, May 2008


Mountain Pine Beetle Develops an Unprecedented Summer Generation in Response to Climate Warming
journal, May 2012

  • Mitton, Jeffry B.; Ferrenberg, Scott M.
  • The American Naturalist, Vol. 179, Issue 5
  • DOI: 10.1086/665007

Representing leaf and root physiological traits in CLM improves global carbon and nitrogen cycling predictions: LEAF AND ROOT TRAITS IN CLM
journal, May 2016

  • Ghimire, Bardan; Riley, William J.; Koven, Charles D.
  • Journal of Advances in Modeling Earth Systems, Vol. 8, Issue 2
  • DOI: 10.1002/2015MS000538

ForCent model development and testing using the Enriched Background Isotope Study experiment
journal, January 2010

  • Parton, William J.; Hanson, Paul J.; Swanston, Chris
  • Journal of Geophysical Research, Vol. 115, Issue G4
  • DOI: 10.1029/2009JG001193

Photosynthesis, carbohydrate levels and chlorophyll fluorescence-estimated intercellular CO2 in water-stressed Casuarina equisetifolia Forst. & Forst.
journal, July 1999


On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm
journal, September 2005


Climate–Carbon Cycle Feedback Analysis: Results from the C 4 MIP Model Intercomparison
journal, July 2006

  • Friedlingstein, P.; Cox, P.; Betts, R.
  • Journal of Climate, Vol. 19, Issue 14
  • DOI: 10.1175/JCLI3800.1

Ecosystem model spin-up: Estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model
journal, November 2005


Apparent seasonal cycle in isotopic discrimination of carbon in the atmosphere and biosphere due to vapor pressure deficit: SEASONAL ISOTOPIC DISCRIMINATION OF CO2
journal, September 2010

  • Ballantyne, A. P.; Miller, J. B.; Tans, P. P.
  • Global Biogeochemical Cycles, Vol. 24, Issue 3
  • DOI: 10.1029/2009GB003623

Fluorescence Parameters Measured Concurrently with Net Photosynthesis to Investigate Chloroplastic CO2 Concentration in Leaves of Quercus ilex L.
journal, August 1990


Carbon isotopes and water use efficiency: sense and sensitivity
journal, January 2008


Carbon 13 exchanges between the atmosphere and biosphere
journal, December 1997

  • Fung, I.; Field, C. B.; Berry, J. A.
  • Global Biogeochemical Cycles, Vol. 11, Issue 4
  • DOI: 10.1029/97GB01751

Relationship between temperature and the seasonal course of photosynthesis in Scots pine at northern timberline and in southern boreal zone
journal, January 2007


Optimal stomatal behaviour around the world
journal, March 2015

  • Lin, Yan-Shih; Medlyn, Belinda E.; Duursma, Remko A.
  • Nature Climate Change, Vol. 5, Issue 5
  • DOI: 10.1038/nclimate2550

Global carbon budget 2014
journal, January 2015

  • Le Quéré, C.; Moriarty, R.; Andrew, R. M.
  • Earth System Science Data, Vol. 7, Issue 1
  • DOI: 10.5194/essd-7-47-2015

Long-term field performance of a tunable diode laser absorption spectrometer for analysis of carbon isotopes of CO 2 in forest air
journal, January 2008

  • Schaeffer, S. M.; Miller, J. B.; Vaughn, B. H.
  • Atmospheric Chemistry and Physics, Vol. 8, Issue 17
  • DOI: 10.5194/acp-8-5263-2008

Estimating parameters of a forest ecosystem C model with measurements of stocks and fluxes as joint constraints
journal, April 2010


Estimating diurnal to annual ecosystem parameters by synthesis of a carbon flux model with eddy covariance net ecosystem exchange observations
journal, February 2005


A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species
journal, June 1980

  • Farquhar, G. D.; von Caemmerer, S.; Berry, J. A.
  • Planta, Vol. 149, Issue 1
  • DOI: 10.1007/BF00386231

Mechanistic scaling of ecosystem function and dynamics in space and time: Ecosystem Demography model version 2
journal, January 2009

  • Medvigy, D.; Wofsy, S. C.; Munger, J. W.
  • Journal of Geophysical Research, Vol. 114, Issue G1
  • DOI: 10.1029/2008JG000812

Carbon Isotope Discrimination and Photosynthesis
journal, June 1989

  • Farquhar, G. D.; Ehleringer, J. R.; Hubick, K. T.
  • Annual Review of Plant Physiology and Plant Molecular Biology, Vol. 40, Issue 1, p. 503-537
  • DOI: 10.1146/annurev.pp.40.060189.002443

Parameter and prediction uncertainty in an optimized terrestrial carbon cycle model: Effects of constraining variables and data record length
journal, January 2011

  • Ricciuto, Daniel M.; King, Anthony W.; Dragoni, D.
  • Journal of Geophysical Research, Vol. 116, Issue G1
  • DOI: 10.1029/2010JG001400