Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
Abstract
Porphyra umbilicalis (laver) belongs to an ancient group of red algae (Bangiophyceae), is harvested for human food, and thrives in the harsh conditions of the upper intertidal zone. Here we present the 87.7-Mbp haploid Porphyra genome (65.8% G + C content, 13,125 gene loci) and elucidate traits that inform our understanding of the biology of red algae as one of the few multicellular eukaryotic lineages. Novel features of the Porphyra genome shared by other red algae relate to the cytoskeleton, calcium signaling, the cell cycle, and stress-tolerance mechanisms including photoprotection. Cytoskeletal motor proteins in Porphyra are restricted to a small set of kinesins that appear to be the only universal cytoskeletal motors within the red algae. Dynein motors are absent, and most red algae, including Porphyra, lack myosin. This surprisingly minimal cytoskeleton offers a potential explanation for why red algal cells and multicellular structures are more limited in size than in most multicellular lineages. Additional discoveries further relating to the stress tolerance of bangiophytes include ancestral enzymes for sulfation of the hydrophilic galactan-rich cell wall, evidence for mannan synthesis that originated before the divergence of green and red algae, and a high capacity for nutrient uptake. Our analyses provide amore »
- Authors:
-
more »
- University of Maine, Orono (Maine). School of Marine Sciences
- University of Maine, Orono (Maine). School of Marine Sciences; Univ. of Wyoming, Laramie, WY (United States). Department of Molecular Biology
- Sorbonne Universites, Universite Pierre and Marie Curie Paris (France). Integrative Biology of Marine Models, Station Biologique de Roscoff
- Marine Biological Association of the United Kingdom, Plymouth (United Kingdom)
- Johannes Gutenberg-Universitat Mainz (Germany). Institute for Molecular Biology
- University of Notre Dame, South Bend, IN (United States). Department of Chemistry & Biochemistry
- HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Brookhaven National Lab. (BNL), Upton, NY (United States). Biology Dept.
- Univ. of Queensland, Brisbane (Australia). Institute for Molecular Bioscience and School of Chemistry and Molecular Biosciences
- Kansas State Univ., Manhattan, KS (United States). Division of Biology
- Rutgers Univ., New Brunswick, NJ (United States). Department of Ecology, Evolution & Natural Resources
- Univ. of New Hampshire, Durham, NH (United States). Department of Biological Sciences
- Scottish Marine Institute (United Kingdom). Scottish Association for Marine Sciences
- Natural History Museum, Department of Life Sciences, London (United Kingdom)
- Sorbonne Universites, Universite Pierre and Marie Curie Paris (France). Integrative Biology of Marine Models, Station Biologique de Roscoff
- University of British Columbia, Vancouver BC (Canada). Department of Botany
- Tau Biosciences LLC, Edmond, OK (United States)
- University of California, Santa Cruz, CA (United States). Department of Biomolecular Engineering
- University of Cambridge (United Kingdom). Department of Plant Sciences
- University of Connecticut, Groton, CT (United States). Department of Marine Sciences
- Friedrich-Schiller University, Jena (Germany). Institute of General Botany and Plant Phisiology
- Kansas State University, Manhattan, KS (United States). Division of Biology
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Rutgers University, New Brunswick, NJ (United States). Department of Ecology, Evolution & Natural Resources
- University of Maine, Orono, ME (United States). Department of Molecular & Biomedical Science
- University of Cambridge (United Kingdom). Dept. of Plant Sciences
- Fujian Agriculture and Forestry University, Fuzhou (China). Basic Forestry and Proteomics Research Center, HIST
- Carnegie Institution for Science, Stanford, CA (United States). Dept. of Plant Science
- University of Connecticut, Stamford, CT (United States). Department of Ecology & Evolutionary Biology
- University of Bonn (Germany). Institute of Molecular Physiology and Biotechnology
- East Carolina University, Greenville, NC (United States). Department of Biology
- Publication Date:
- Research Org.:
- Brookhaven National Laboratory (BNL), Upton, NY (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1376126
- Alternate Identifier(s):
- OSTI ID: 1616054
- Report Number(s):
- BNL-114055-2017-JA
Journal ID: ISSN 0027-8424
- Grant/Contract Number:
- SC0012704; AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Proceedings of the National Academy of Sciences of the United States of America
- Additional Journal Information:
- Journal Volume: 114; Journal Issue: 31; Journal ID: ISSN 0027-8424
- Publisher:
- National Academy of Sciences, Washington, DC (United States)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; antioxidants; carbohydrate-active enzymes (CAZymes); cyclin D; iron-uptake; kinesin; mannan biosynthesis; mycosporine-like amino acids (MAAs); septins; sulfated galactans; vitamin B12
Citation Formats
Brawley, Susan H., Blouin, Nicolas A., Ficko-Blean, Elizabeth, Wheeler, Glen L., Lohr, Martin, Goodson, Holly V., Jenkins, Jerry W., Blaby-Haas, Crysten E., Helliwell, Katherine E., Chan, Cheong Xin, Marriage, Tara N., Bhattacharya, Debashish, Klein, Anita S., Badis, Yacine, Brodie, Juliet, Cao, Yuanyu, Collén, Jonas, Dittami, Simon M., Gachon, Claire M. M., Green, Beverley R., Karpowicz, Steven J., Kim, Jay W., Kudahl, Ulrich Johan, Lin, Senjie, Michel, Gurvan, Mittag, Maria, Olson, Bradley J. S. C., Pangilinan, Jasmyn L., Peng, Yi, Qiu, Huan, Shu, Shengqiang, Singer, John T., Smith, Alison G., Sprecher, Brittany N., Wagner, Volker, Wang, Wenfei, Wang, Zhi-Yong, Yan, Juying, Yarish, Charles, Zäuner-Riek, Simone, Zhuang, Yunyun, Zou, Yong, Lindquist, Erika A., Grimwood, Jane, Barry, Kerrie W., Rokhsar, Daniel S., Schmutz, Jeremy, Stiller, John W., Grossman, Arthur R., and Prochnik, Simon E. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). United States: N. p., 2017.
Web. doi:10.1073/pnas.1703088114.
Brawley, Susan H., Blouin, Nicolas A., Ficko-Blean, Elizabeth, Wheeler, Glen L., Lohr, Martin, Goodson, Holly V., Jenkins, Jerry W., Blaby-Haas, Crysten E., Helliwell, Katherine E., Chan, Cheong Xin, Marriage, Tara N., Bhattacharya, Debashish, Klein, Anita S., Badis, Yacine, Brodie, Juliet, Cao, Yuanyu, Collén, Jonas, Dittami, Simon M., Gachon, Claire M. M., Green, Beverley R., Karpowicz, Steven J., Kim, Jay W., Kudahl, Ulrich Johan, Lin, Senjie, Michel, Gurvan, Mittag, Maria, Olson, Bradley J. S. C., Pangilinan, Jasmyn L., Peng, Yi, Qiu, Huan, Shu, Shengqiang, Singer, John T., Smith, Alison G., Sprecher, Brittany N., Wagner, Volker, Wang, Wenfei, Wang, Zhi-Yong, Yan, Juying, Yarish, Charles, Zäuner-Riek, Simone, Zhuang, Yunyun, Zou, Yong, Lindquist, Erika A., Grimwood, Jane, Barry, Kerrie W., Rokhsar, Daniel S., Schmutz, Jeremy, Stiller, John W., Grossman, Arthur R., & Prochnik, Simon E. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). United States. https://doi.org/10.1073/pnas.1703088114
Brawley, Susan H., Blouin, Nicolas A., Ficko-Blean, Elizabeth, Wheeler, Glen L., Lohr, Martin, Goodson, Holly V., Jenkins, Jerry W., Blaby-Haas, Crysten E., Helliwell, Katherine E., Chan, Cheong Xin, Marriage, Tara N., Bhattacharya, Debashish, Klein, Anita S., Badis, Yacine, Brodie, Juliet, Cao, Yuanyu, Collén, Jonas, Dittami, Simon M., Gachon, Claire M. M., Green, Beverley R., Karpowicz, Steven J., Kim, Jay W., Kudahl, Ulrich Johan, Lin, Senjie, Michel, Gurvan, Mittag, Maria, Olson, Bradley J. S. C., Pangilinan, Jasmyn L., Peng, Yi, Qiu, Huan, Shu, Shengqiang, Singer, John T., Smith, Alison G., Sprecher, Brittany N., Wagner, Volker, Wang, Wenfei, Wang, Zhi-Yong, Yan, Juying, Yarish, Charles, Zäuner-Riek, Simone, Zhuang, Yunyun, Zou, Yong, Lindquist, Erika A., Grimwood, Jane, Barry, Kerrie W., Rokhsar, Daniel S., Schmutz, Jeremy, Stiller, John W., Grossman, Arthur R., and Prochnik, Simon E. Mon .
"Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)". United States. https://doi.org/10.1073/pnas.1703088114. https://www.osti.gov/servlets/purl/1376126.
@article{osti_1376126,
title = {Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)},
author = {Brawley, Susan H. and Blouin, Nicolas A. and Ficko-Blean, Elizabeth and Wheeler, Glen L. and Lohr, Martin and Goodson, Holly V. and Jenkins, Jerry W. and Blaby-Haas, Crysten E. and Helliwell, Katherine E. and Chan, Cheong Xin and Marriage, Tara N. and Bhattacharya, Debashish and Klein, Anita S. and Badis, Yacine and Brodie, Juliet and Cao, Yuanyu and Collén, Jonas and Dittami, Simon M. and Gachon, Claire M. M. and Green, Beverley R. and Karpowicz, Steven J. and Kim, Jay W. and Kudahl, Ulrich Johan and Lin, Senjie and Michel, Gurvan and Mittag, Maria and Olson, Bradley J. S. C. and Pangilinan, Jasmyn L. and Peng, Yi and Qiu, Huan and Shu, Shengqiang and Singer, John T. and Smith, Alison G. and Sprecher, Brittany N. and Wagner, Volker and Wang, Wenfei and Wang, Zhi-Yong and Yan, Juying and Yarish, Charles and Zäuner-Riek, Simone and Zhuang, Yunyun and Zou, Yong and Lindquist, Erika A. and Grimwood, Jane and Barry, Kerrie W. and Rokhsar, Daniel S. and Schmutz, Jeremy and Stiller, John W. and Grossman, Arthur R. and Prochnik, Simon E.},
abstractNote = {Porphyra umbilicalis (laver) belongs to an ancient group of red algae (Bangiophyceae), is harvested for human food, and thrives in the harsh conditions of the upper intertidal zone. Here we present the 87.7-Mbp haploid Porphyra genome (65.8% G + C content, 13,125 gene loci) and elucidate traits that inform our understanding of the biology of red algae as one of the few multicellular eukaryotic lineages. Novel features of the Porphyra genome shared by other red algae relate to the cytoskeleton, calcium signaling, the cell cycle, and stress-tolerance mechanisms including photoprotection. Cytoskeletal motor proteins in Porphyra are restricted to a small set of kinesins that appear to be the only universal cytoskeletal motors within the red algae. Dynein motors are absent, and most red algae, including Porphyra, lack myosin. This surprisingly minimal cytoskeleton offers a potential explanation for why red algal cells and multicellular structures are more limited in size than in most multicellular lineages. Additional discoveries further relating to the stress tolerance of bangiophytes include ancestral enzymes for sulfation of the hydrophilic galactan-rich cell wall, evidence for mannan synthesis that originated before the divergence of green and red algae, and a high capacity for nutrient uptake. Our analyses provide a comprehensive understanding of the red algae, which are both commercially important and have played a major role in the evolution of other algal groups through secondary endosymbioses.},
doi = {10.1073/pnas.1703088114},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
number = 31,
volume = 114,
place = {United States},
year = {Mon Jul 17 00:00:00 EDT 2017},
month = {Mon Jul 17 00:00:00 EDT 2017}
}
Web of Science
Works referenced in this record:
Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
journal, April 2004
- Matsuzaki, Motomichi; Misumi, Osami; Shin-i, Tadasu
- Nature, Vol. 428, Issue 6983
Inferring dispersal patterns of the generalist root fungus Armillaria mellea
journal, December 2011
- Travadon, Renaud; Smith, Matthew E.; Fujiyoshi, Phillip
- New Phytologist, Vol. 193, Issue 4
The role of F-Actin During Fertilization in the red alga Aglaothamnion Oosumiense (Rhodophyta)
journal, August 1999
- Kim, Gwang Hoon; Kim, Sung-Ho
- Journal of Phycology, Vol. 35, Issue 4
Fertilization and the cytoskeleton in the red alga Bostrychia moritziana (Rhodomelaceae, Rhodophyta)
journal, November 2002
- Wilson, S. M.; Pickett‐Heaps, J. D.; West, J. A.
- European Journal of Phycology, Vol. 37, Issue 4
The Role of Homogentisate Phytyltransferase and Other Tocopherol Pathway Enzymes in the Regulation of Tocopherol Synthesis during Abiotic Stress
journal, September 2003
- Collakova, Eva; DellaPenna, Dean
- Plant Physiology, Vol. 133, Issue 2
A possible role for actin dots in the formation of the contractile ring in the ultra-micro algaCyanidium caldarium RK-1
journal, March 1998
- Takahashi, H.; Takano, H.; Kuroiwa, H.
- Protoplasma, Vol. 202, Issue 1-2
Abscisic Acid: Emergence of a Core Signaling Network
journal, June 2010
- Cutler, Sean R.; Rodriguez, Pedro L.; Finkelstein, Ruth R.
- Annual Review of Plant Biology, Vol. 61, Issue 1
Chloroplast rotation and morphological plasticity of the unicellular alga Rhodosorus (Rhodophyta, Stylonematales)
journal, September 2002
- Wilson, Sarah; West, John; Pickett-Heaps, Jeremy
- Phycological Research, Vol. 50, Issue 3
News about cryptochrome photoreceptors in algae
journal, February 2013
- Beel, Benedikt; Müller, Nico; Kottke, Tilman
- Plant Signaling & Behavior, Vol. 8, Issue 2
The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes
journal, July 2010
- Michel, Gurvan; Tonon, Thierry; Scornet, Delphine
- New Phytologist, Vol. 188, Issue 1
Recognition of non-self-polysaccharides by C-type lectin receptors dectin-1 and dectin-2
journal, March 2009
- Hollmig, S. T.; Ariizumi, K.; Cruz, P. D.
- Glycobiology, Vol. 19, Issue 6
Lateral Gene Transfer of a Multigene Region from Cyanobacteria to Dinoflagellates Resulting in a Novel Plastid-Targeted Fusion Protein
journal, May 2006
- Waller, Ross F.; Slamovits, Claudio H.; Keeling, Patrick J.
- Molecular Biology and Evolution, Vol. 23, Issue 7
Floridoside and isofloridoside are synthesized by trehalose 6-phosphate synthase-like enzymes in the red alga Galdieria sulphuraria
journal, October 2014
- Pade, Nadin; Linka, Nicole; Ruth, Wolfgang
- New Phytologist, Vol. 205, Issue 3
Genome of the red alga Porphyridium purpureum
journal, June 2013
- Bhattacharya, Debashish; Price, Dana C.; Chan, Cheong Xin
- Nature Communications, Vol. 4, Issue 1
Role of abscisic acid (ABA) in activating antioxidant tolerance responses to desiccation stress in intertidal seaweed species
journal, December 2015
- Guajardo, Eduardo; Correa, Juan A.; Contreras-Porcia, Loretto
- Planta, Vol. 243, Issue 3
Dynein light chain family genes in 15 plant species: Identification, evolution and expression profiles
journal, January 2017
- Cao, Jun; Li, Xiangyang; Lv, Yueqing
- Plant Science, Vol. 254
The cellulose synthase superfamily in fully sequenced plants and algae
journal, January 2009
- Yin, Yanbin; Huang, Jinling; Xu, Ying
- BMC Plant Biology, Vol. 9, Issue 1
The chemistry and antioxidant properties of tocopherols and tocotrienols
journal, July 1996
- Kamal-Eldin, Afaf; Appelqvist, Lars-Åke
- Lipids, Vol. 31, Issue 7
Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species
journal, January 2007
- Odronitz, Florian; Kollmar, Martin
- Genome Biology, Vol. 8, Issue 9
Genome-Wide Annotation and Expression Profiling of Cell Cycle Regulatory Genes in Chlamydomonas reinhardtii
journal, February 2005
- Bisova, Katerina; Krylov, Dmitri M.; Umen, James G.
- Plant Physiology, Vol. 137, Issue 2
Chlamydomonas reinhardtii thermal tolerance enhancement mediated by a mutualistic interaction with vitamin B12-producing bacteria
journal, March 2013
- Xie, Bo; Bishop, Shawn; Stessman, Dan
- The ISME Journal, Vol. 7, Issue 8
A novel type of light-harvesting antenna protein of red algal origin in algae with secondary plastids
journal, January 2013
- Sturm, Sabine; Engelken, Johannes; Gruber, Ansgar
- BMC Evolutionary Biology, Vol. 13, Issue 1
Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity
journal, May 2009
- Coesel, Sacha; Mangogna, Manuela; Ishikawa, Tomoko
- EMBO reports, Vol. 10, Issue 6
FEA1 , FEA2 , and FRE1 , Encoding Two Homologous Secreted Proteins and a Candidate Ferrireductase, Are Expressed Coordinately with FOX1 and FTR1 in Iron-Deficient Chlamydomonas reinhardtii
journal, July 2007
- Allen, Michael D.; del Campo, José A.; Kropat, Janette
- Eukaryotic Cell, Vol. 6, Issue 10
How many Species of Algae are There?
journal, September 2012
- Guiry, Michael D.
- Journal of Phycology, Vol. 48, Issue 5
Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases
journal, January 2009
- Martin, D. M. A.; Miranda-Saavedra, D.; Barton, G. J.
- Nucleic Acids Research, Vol. 37, Issue Database
Sensitivity of intertidal and subtidal red algae to UVA and UVB radiation, as monitored by Chlorophyll fluorescence measurements: Influence of collection depth and season, and length of irradiation
journal, November 1996
- Dring, Matthew J.; Wagner, Andreas; Boeskov, Jette
- European Journal of Phycology, Vol. 31, Issue 4
The Circadian System in Higher Plants
journal, June 2009
- Harmer, Stacey L.
- Annual Review of Plant Biology, Vol. 60, Issue 1
Evaluation of Bioactive Compounds in Fresh Edible Seaweeds
journal, October 2011
- Ferraces-Casais, P.; Lage-Yusty, M. A.; Rodríguez-Bernaldo de Quirós, A.
- Food Analytical Methods, Vol. 5, Issue 4
A new look at an Ancient Order: Generic Revision of the Bangiales (Rhodophyta)1: Generic Revision of the Bangiales
journal, September 2011
- Sutherland, Judith E.; Lindstrom, Sandra C.; Nelson, Wendy A.
- Journal of Phycology, Vol. 47, Issue 5
Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista
journal, January 2016
- Burki, Fabien; Kaplan, Maia; Tikhonenkov, Denis V.
- Proceedings of the Royal Society B: Biological Sciences, Vol. 283, Issue 1823
Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes
journal, May 2011
- Helliwell, K. E.; Wheeler, G. L.; Leptos, K. C.
- Molecular Biology and Evolution, Vol. 28, Issue 10
Growth, cell volume, and fine structure of Porphyra umbilicalis in relation to osmotic tolerance
journal, December 1980
- Wiencke, Christian; L�uchli, Andr�
- Planta, Vol. 150, Issue 4
The evolution of photosynthesis in chromist algae through serial endosymbioses
journal, December 2014
- Stiller, John W.; Schreiber, John; Yue, Jipei
- Nature Communications, Vol. 5, Issue 1
Phycomyces
journal, March 1969
- Bergman, K.; Burke, P. V.; Cerdá-Olmedo, E.
- Bacteriological Reviews, Vol. 33, Issue 1
ACTIN AND MYOSIN REGULATE PSEUDOPODIA OF PORPHYRA PULCHELLA (RHODOPHYTA) ARCHEOSPORES
journal, February 2007
- Ackland, Jillian C.; West, John A.; Pickett-Heaps, Jeremy
- Journal of Phycology, Vol. 43, Issue 1
An ATP-Grasp Ligase Involved in the Last Biosynthetic Step of the Iminomycosporine Shinorine in Nostoc punctiforme ATCC 29133
journal, September 2011
- Gao, Q.; Garcia-Pichel, F.
- Journal of Bacteriology, Vol. 193, Issue 21
The structure and biosynthesis of porphyran: a comparison of some samples
journal, August 1962
- Rees, Da; Conway, E.
- Biochemical Journal, Vol. 84, Issue 2
The Cryptochromes: Blue Light Photoreceptors in Plants and Animals
journal, June 2011
- Chaves, Inês; Pokorny, Richard; Byrdin, Martin
- Annual Review of Plant Biology, Vol. 62, Issue 1
Stretch growth of integrated axon tracts: Extremes and exploitations
journal, November 2009
- Smith, Douglas H.
- Progress in Neurobiology, Vol. 89, Issue 3
Floridoside, L-Isofloridoside, and D-Isofloridoside in the Red Alga Porphyra columbina (Seasonal and Osmotic Effects)
journal, October 1993
- Karsten, U.; Barrow, K. D.; King, R. J.
- Plant Physiology, Vol. 103, Issue 2
The solution to the cytological paradox of isomorphy
journal, March 1987
- Goff, L. J.
- The Journal of Cell Biology, Vol. 104, Issue 3
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
journal, January 2016
- Olsen, Jeanine L.; Rouzé, Pierre; Verhelst, Bram
- Nature, Vol. 530, Issue 7590
The bladed Bangiales (Rhodophyta) of the South Eastern Pacific: Molecular species delimitation reveals extensive diversity
journal, January 2016
- Guillemin, Marie-Laure; Contreras-Porcia, Loretto; Ramírez, María Eliana
- Molecular Phylogenetics and Evolution, Vol. 94
How pollen tubes grow
journal, March 2007
- Krichevsky, Alexander; Kozlovsky, Stanislav V.; Tian, Guo-Wei
- Developmental Biology, Vol. 303, Issue 2
The Genetic and Molecular Basis for Sunscreen Biosynthesis in Cyanobacteria
journal, September 2010
- Balskus, E. P.; Walsh, C. T.
- Science, Vol. 329, Issue 5999
Porphyra: a marine crop shaped by stress
journal, January 2011
- Blouin, Nicolas A.; Brodie, Juliet A.; Grossman, Arthur C.
- Trends in Plant Science, Vol. 16, Issue 1
Phycomyces.
journal, January 1969
- Bergman, K.; Burke, P. V.; Cerdá-Olmedo, E.
- Bacteriological Reviews, Vol. 33, Issue 1
Plant pathogens and integrated defence responses to infection
journal, June 2001
- Dangl, Jeffery L.; Jones, Jonathan D. G.
- Nature, Vol. 411, Issue 6839
Metabolic Phenotypes Associated with High-Temperature Tolerance of Porphyra haitanensis Strains
journal, August 2013
- Ye, Yangfang; Zhang, Limin; Yang, Rui
- Journal of Agricultural and Food Chemistry, Vol. 61, Issue 35
The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis)
journal, March 2013
- Nakamura, Yoji; Sasaki, Naobumi; Kobayashi, Masahiro
- PLoS ONE, Vol. 8, Issue 3
The high-affinity metal Transporters NRAMP1 and IRT1 Team up to Take up Iron under Sufficient Metal Provision
journal, November 2016
- Castaings, Loren; Caquot, Antoine; Loubet, Stéphanie
- Scientific Reports, Vol. 6, Issue 1
Cytoskeletal dynamics: A view from the membrane
journal, May 2015
- Bezanilla, Magdalena; Gladfelter, Amy S.; Kovar, David R.
- The Journal of Cell Biology, Vol. 209, Issue 3
Class II formin targeting to the cell cortex by binding PI(3,5)P 2 is essential for polarized growth
journal, July 2012
- van Gisbergen, Peter A. C.; Li, Ming; Wu, Shu-Zon
- The Journal of Cell Biology, Vol. 198, Issue 2
Chemical Composition and Structure of the cell Walls of the Conchocelis and Thallus Phases of Porphyra Tenera (Rhodophyceae)1,2
journal, June 1981
- Mukai, Leonard S.; Craigie, James S.; Brown, Robert G.
- Journal of Phycology, Vol. 17, Issue 2
Fluorescence Characteristics of Photoinhibition and Recovery in a Sun and a Shade Species of the Red Algal Genus Porphyra
journal, March 1988
- Bose, Salil; Herbert, Stephen K.; Fork, David C.
- Plant Physiology, Vol. 86, Issue 3
Abscisic Acid Participates in the Control of Cell Cycle Initiation Through Heme Homeostasis in the Unicellular Red Alga Cyanidioschyzon merolae
journal, April 2016
- Kobayashi, Yuki; Ando, Hiroyuki; Hanaoka, Mitsumasa
- Plant and Cell Physiology, Vol. 57, Issue 5
Polysaccharide Localization in the Cell Wall of Porphyra leucosticta (Bangiophyceae, Rhodophyta) during the Life Cycle
journal, January 1995
- Baldan, B.; Andolfo, P.; Culoso, F.
- Botanica Marina, Vol. 38, Issue 1-6
An AFLP-based test of clonality in widespread, putatively asexual populations of Porphyra umbilicalis (Rhodophyta) in the Northwest Atlantic with an in silico analysis for bacterial contamination
journal, August 2012
- Blouin, N. A.; Brawley, S. H.
- Marine Biology, Vol. 159, Issue 12
Essential Role of an Unusually Long-lived Tyrosyl Radical in the Response to Red Light of the Animal-like Cryptochrome aCRY
journal, May 2016
- Oldemeyer, Sabine; Franz, Sophie; Wenzel, Sandra
- Journal of Biological Chemistry, Vol. 291, Issue 27
Chemical Composition and Structure of the cell Walls of the Conchocelis and Thallus Phases of Porphyra Tenera (Rhodophyceae)1,2
journal, June 1981
- Mukai, Leonard S.; Craigie, James S.; Brown, Robert G.
- Journal of Phycology, Vol. 17, Issue 2
The Class III Cyclobutane Pyrimidine Dimer Photolyase Structure Reveals a New Antenna Chromophore Binding Site and Alternative Photoreduction Pathways
journal, March 2015
- Scheerer, Patrick; Zhang, Fan; Kalms, Jacqueline
- Journal of Biological Chemistry, Vol. 290, Issue 18
Evidence of ancient genome reduction in red algae (Rhodophyta)
journal, May 2015
- Qiu, Huan; Price, Dana C.; Yang, Eun Chan
- Journal of Phycology, Vol. 51, Issue 4
The sucrose non-fermenting-1-related (SnRK) family of protein kinases: potential for manipulation to improve stress tolerance and increase yield
journal, October 2010
- Coello, P.; Hey, S. J.; Halford, N. G.
- Journal of Experimental Botany, Vol. 62, Issue 3
Class XI Myosins Are Required for Development, Cell Expansion, and F-Actin Organization in Arabidopsis
journal, June 2010
- Peremyslov, Valera V.; Prokhnevsky, Alexey I.; Dolja, Valerian V.
- The Plant Cell, Vol. 22, Issue 6
The Effects of Salinity upon Cellular Volume of the Marine Red Alga Porphyra purpurea (Roth) C.Ag.
journal, December 1980
- Reed, R. H.; Collins, J. C.; Russell, G.
- Journal of Experimental Botany, Vol. 31, Issue 6
Genomic clusters, putative pathogen recognition molecules, and antimicrobial genes are induced by infection of C. elegans with M. nematophilum
journal, June 2006
- O'Rourke, D.
- Genome Research, Vol. 16, Issue 8
A freeze-substitution ultrastructural study of the cytoskeleton of the red alga Antithamnion kylinii (Ceramiales)
journal, July 1998
- Babuka, Susan J.; Pueschel, Curt M.
- Phycologia, Vol. 37, Issue 4
A Novel Protein, Ubiquitous in Marine Phytoplankton, Concentrates Iron at the Cell Surface and Facilitates Uptake
journal, February 2015
- Morrissey, Joe; Sutak, Robert; Paz-Yepes, Javier
- Current Biology, Vol. 25, Issue 3
The novel functions of kinesin motor proteins in plants
journal, December 2011
- Li, Juan; Xu, Yunyuan; Chong, Kang
- Protoplasma, Vol. 249, Issue S2
Kinesin-4 Functions in Vesicular Transport on Cortical Microtubules and Regulates Cell Wall Mechanics during Cell Elongation in Plants
journal, July 2015
- Kong, Zhaosheng; Ioki, Motohide; Braybrook, Siobhan
- Molecular Plant, Vol. 8, Issue 7
The CBL-CIPK Ca 2+ -decoding signaling network: function and perspectives
journal, November 2009
- Weinl, Stefan; Kudla, Jörg
- New Phytologist, Vol. 184, Issue 3
Increasing complexity and versatility: How the calcium signaling toolkit was shaped during plant land colonization
journal, March 2015
- Edel, Kai H.; Kudla, Jörg
- Cell Calcium, Vol. 57, Issue 3
Algae as nutritional and functional food sources: revisiting our understanding
journal, November 2016
- Wells, Mark L.; Potin, Philippe; Craigie, James S.
- Journal of Applied Phycology, Vol. 29, Issue 2
Clustering of a kinesin-14 motor enables processive retrograde microtubule-based transport in plants
journal, June 2015
- Jonsson, Erik; Yamada, Moé; Vale, Ronald D.
- Nature Plants, Vol. 1, Issue 7
Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants
journal, February 2012
- Price, D. C.; Chan, C. X.; Yoon, H. S.
- Science, Vol. 335, Issue 6070
Major Developmental Regulators and Their Expression in two Closely Related Species of Porphyra (Rhodophyta)1: Developmental Genes in Porphyra
journal, April 2012
- Stiller, John W.; Perry, Justin; Rymarquis, Linda A.
- Journal of Phycology, Vol. 48, Issue 4
Sweet and sour sugars from the sea: the biosynthesis and remodeling of sulfated cell wall polysaccharides from marine macroalgae [Sweet and sour sugars from the sea: the biosynthesis and remodeling of sulfated cell wall polysaccharides from marine macroalgae]
journal, May 2015
- Ficko-Blean, Elizabeth; Hervé, Cecile; Michel, Gurvan
- Perspectives in Phycology, Vol. 2, Issue 1
OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis
journal, August 2014
- Yuan, Fang; Yang, Huimin; Xue, Yan
- Nature, Vol. 514, Issue 7522
Ethylene regulation of sexual reproduction in the marine red alga Pyropia yezoensis (Rhodophyta)
journal, July 2016
- Uji, Toshiki; Matsuda, Ryuya; Takechi, Katsuaki
- Journal of Applied Phycology, Vol. 28, Issue 6
Fine-Tuning Motile Cilia and Flagella: Evolution of the Dynein Motor Proteins from Plants to Humans at High Resolution
journal, October 2016
- Kollmar, Martin
- Molecular Biology and Evolution, Vol. 33, Issue 12
Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote
journal, March 2013
- Schonknecht, G.; Chen, W. -H.; Ternes, C. M.
- Science, Vol. 339, Issue 6124
Characterization of cell-cycle-driven and light-driven gene expression in a synchronous culture system in the unicellular rhodophyte Cyanidioschyzon merolae
journal, March 2010
- Moriyama, T.; Terasawa, K.; Sekine, K.
- Microbiology, Vol. 156, Issue 6
The littoral red alga Pyropia haitanensis uses rapid accumulation of floridoside as the desiccation acclimation strategy
journal, June 2014
- Qian, Feijian; Luo, Qijun; Yang, Rui
- Journal of Applied Phycology, Vol. 27, Issue 1
Algae as nutritional and functional food sources: revisiting our understanding.
text, January 2017
- Wells, Mark L.; Potin, Philippe; Craigie, James S.
- Apollo - University of Cambridge Repository
Designing selective inhibitors for calcium-dependent protein kinases in apicomplexans
journal, July 2015
- Hui, Raymond; El Bakkouri, Majida; Sibley, L. David
- Trends in Pharmacological Sciences, Vol. 36, Issue 7
Cyanobacteria and Eukaryotic Algae Use Different Chemical Variants of Vitamin B12
journal, April 2016
- Helliwell, Katherine Emma; Lawrence, Andrew David; Holzer, Andre
- Current Biology, Vol. 26, Issue 8
Diversity and Abundance of the Bacterial Community of the Red Macroalga Porphyra umbilicalis: Did Bacterial Farmers Produce Macroalgae?
journal, March 2013
- Miranda, Lilibeth N.; Hutchison, Keith; Grossman, Arthur R.
- PLoS ONE, Vol. 8, Issue 3
Patterns of kinesin evolution reveal a complex ancestral eukaryote with a multifunctional cytoskeleton
journal, January 2010
- Wickstead, Bill; Gull, Keith; Richards, Thomas A.
- BMC Evolutionary Biology, Vol. 10, Issue 1
Beyond the Green: Understanding the Evolutionary Puzzle of Plant and Algal Cell Walls
journal, April 2010
- Popper, Zoë A.; Tuohy, Maria G.
- Plant Physiology, Vol. 153, Issue 2
A Plant Cryptochrome Controls Key Features of the Chlamydomonas Circadian Clock and Its Life Cycle
journal, March 2017
- Müller, Nico; Wenzel, Sandra; Zou, Yong
- Plant Physiology, Vol. 174, Issue 1
Taxonomic distribution and origins of the extended LHC (light-harvesting complex) antenna protein superfamily
journal, July 2010
- Engelken, Johannes; Brinkmann, Henner; Adamska, Iwona
- BMC Evolutionary Biology, Vol. 10, Issue 1
The J-protein family: modulating protein assembly, disassembly and translocation
journal, June 2004
- Walsh, Peter; Bursać, Dejan; Law, Yin Chern
- EMBO reports, Vol. 5, Issue 6
Chaperones in control of protein disaggregation
journal, January 2008
- Liberek, Krzysztof; Lewandowska, Agnieszka; Ziętkiewicz, Szymon
- The EMBO Journal, Vol. 27, Issue 2
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
journal, March 2013
- Collen, J.; Porcel, B.; Carre, W.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 13
Molecular Mechanism for Inhibition of a Critical Component in the Arabidopsis thaliana Abscisic Acid Signal Transduction Pathways, SnRK2.6, by Protein Phosphatase ABI1
journal, November 2011
- Xie, Tian; Ren, Ruobing; Zhang, Yuan-yuan
- Journal of Biological Chemistry, Vol. 287, Issue 1
A calcium sensor – protein kinase signaling module diversified in plants and is retained in all lineages of Bikonta species
journal, August 2016
- Beckmann, Linda; Edel, Kai H.; Batistič, Oliver
- Scientific Reports, Vol. 6, Issue 1
Characterization of two members of the cryptochrome/photolyase family from Ostreococcus tauri provides insights into the origin and evolution of cryptochromes: Cryptochrome/photolyase family members in Ostreococcus tauri
journal, September 2010
- Heijde, Marc; Zabulon, GÉRald; Corellou, Florence
- Plant, Cell & Environment, Vol. 33, Issue 10
Bangiomorpha pubescens n. gen., n. sp.: implications for the evolution of sex, multicellularity, and the Mesoproterozoic/Neoproterozoic radiation of eukaryotes
journal, September 2000
- Butterfield, Nicholas J.
- Paleobiology, Vol. 26, Issue 3
Works referencing / citing this record:
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes
journal, June 2018
- Shoguchi, Eiichi; Beedessee, Girish; Tada, Ipputa
- BMC Genomics, Vol. 19, Issue 1
PyMPV17, the MPV17 Homolog of Pyropia yezoensis (Rhodophyta), Enhances Osmotic Stress Tolerance in Chlamydomonas
journal, November 2019
- Wi, Jiwoong; Park, Eun-Jeong; Hwang, Mi Sook
- Plant Molecular Biology Reporter, Vol. 38, Issue 1
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions
journal, May 2019
- Rossoni, Alessandro W.; Price, Dana C.; Seger, Mark
- eLife, Vol. 8
The Oxymonad Genome Displays Canonical Eukaryotic Complexity in the Absence of a Mitochondrion
journal, August 2019
- Karnkowska, Anna; Treitli, Sebastian C.; Brzoň, Ondřej
- Molecular Biology and Evolution, Vol. 36, Issue 10
PI signal transduction and ubiquitination respond to dehydration stress in the red seaweed Gloiopeltis furcata under successive tidal cycles
journal, November 2019
- Liu, Shun; Hu, Zi-Min; Zhang, Quansheng
- BMC Plant Biology, Vol. 19, Issue 1
The agar-specific hydrolase ZgAgaC from the marine bacterium Zobellia galactanivorans defines a new GH16 protein subfamily
journal, April 2019
- Naretto, Anaïs; Fanuel, Mathieu; Ropartz, David
- Journal of Biological Chemistry, Vol. 294, Issue 17
Analysis of an improved Cyanophora paradoxa genome assembly
journal, May 2019
- Price, Dana C.; Goodenough, Ursula W.; Roth, Robyn
- DNA Research, Vol. 26, Issue 4
Lacking catalase, a protistan parasite draws on its photosynthetic ancestry to complete an antioxidant repertoire with ascorbate peroxidase
journal, July 2019
- Schott, Eric J.; Di Lella, Santiago; Bachvaroff, Tsvetan R.
- BMC Evolutionary Biology, Vol. 19, Issue 1
Vitamin B 12 sources and microbial interaction
journal, December 2017
- Watanabe, Fumio; Bito, Tomohiro
- Experimental Biology and Medicine, Vol. 243, Issue 2
Genetic toolkits of the red alga Pyropia tenera against the three most common diseases in Pyropia farms
journal, April 2019
- Im, Soo Hyun; Klochkova, Tatyana A.; Lee, Da Jeoung
- Journal of Phycology, Vol. 55, Issue 4
Genomes of early-diverging streptophyte algae shed light on plant terrestrialization
journal, December 2019
- Wang, Sibo; Li, Linzhou; Li, Haoyuan
- Nature Plants, Vol. 6, Issue 2
Advancing the taxonomy of economically important red seaweeds (Rhodophyta)
text, January 2017
- Lim, Phaik-Eem; Yang, Li-En; Tan, Ji
- Taylor & Francis
Red seaweeds Porphyra umbilicalis and Grateloupia turuturu display antigenotoxic and longevity-promoting potential in Drosophila melanogaster
journal, July 2019
- Ferreira, João; Marques, Ana; Abreu, Helena
- European Journal of Phycology, Vol. 54, Issue 4
A chromosome‐level genome assembly of Pyropia haitanensis (Bangiales, Rhodophyta)
journal, November 2019
- Cao, Min; Xu, Kuipeng; Yu, Xinzi
- Molecular Ecology Resources, Vol. 20, Issue 1
Transcriptomic Insights into Innate Immunity Responding to Red Rot Disease in Red Alga Pyropia yezoensis
journal, November 2019
- Tang, Lei; Qiu, Liping; Liu, Cong
- International Journal of Molecular Sciences, Vol. 20, Issue 23
Mannose-Specific Lectins from Marine Algae: Diverse Structural Scaffolds Associated to Common Virucidal and Anti-Cancer Properties
journal, July 2019
- Barre, Annick; Simplicien, Mathias; Benoist, Hervé
- Marine Drugs, Vol. 17, Issue 8
Complex multicellularity in fungi: evolutionary convergence, single origin, or both?: Complex multicellularity in Fungi
journal, April 2018
- Nagy, László G.; Kovács, Gábor M.; Krizsán, Krisztina
- Biological Reviews, Vol. 93, Issue 4
Dietary Supplementation with the Red Seaweed Porphyra umbilicalis Protects against DNA Damage and Pre-Malignant Dysplastic Skin Lesions in HPV-Transgenic Mice
journal, October 2019
- Santos, Susana; Ferreira, Tiago; Almeida, José
- Marine Drugs, Vol. 17, Issue 11
Analysis of synonymous codon usage of chloroplast genome in Porphyra umbilicalis
journal, July 2019
- Li, Guoling; Pan, Zonglian; Gao, Shichen
- Genes & Genomics, Vol. 41, Issue 10
Characterization and expression profiles of small heat shock proteins in the marine red alga Pyropia yezoensis
journal, January 2019
- Uji, Toshiki; Gondaira, Yohei; Fukuda, Satoru
- Cell Stress and Chaperones, Vol. 24, Issue 1
Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift
journal, February 2020
- Belcour, Arnaud; Girard, Jean; Aite, Méziane
- iScience, Vol. 23, Issue 2
Advances in the technologies for studying consortia of bacteria and cyanobacteria/microalgae in wastewaters
journal, April 2019
- Perera, Isiri Adhiwarie; Abinandan, Sudharsanam; Subashchandrabose, Suresh R.
- Critical Reviews in Biotechnology, Vol. 39, Issue 5
The molecular mass and isoelectric point of plant proteomes
journal, August 2019
- Mohanta, Tapan Kumar; Khan, Abdullatif; Hashem, Abeer
- BMC Genomics, Vol. 20, Issue 1
Expansion of phycobilisome linker gene families in mesophilic red algae
journal, October 2019
- Lee, JunMo; Kim, Dongseok; Bhattacharya, Debashish
- Nature Communications, Vol. 10, Issue 1
Scalable Biosynthesis of the Seaweed Neurochemical, Kainic Acid
journal, May 2019
- Chekan, Jonathan R.; McKinnie, Shaun M. K.; Moore, Malia L.
- Angewandte Chemie
Evolution and expression of core SWI / SNF genes in red algae
journal, October 2018
- Stiller, John W.; Yang, Chunlin; Collén, Jonas
- Journal of Phycology, Vol. 54, Issue 6
Full-length transcriptome sequences obtained by a combination of sequencing platforms applied to heat shock proteins and polyunsaturated fatty acids biosynthesis in Pyropia haitanensis
journal, September 2018
- Wang, Wenlei; Chang, Jing; Zheng, Hongyan
- Journal of Applied Phycology, Vol. 31, Issue 2
Transcriptomic analysis under ethylene precursor treatment uncovers the regulation of gene expression linked to sexual reproduction in the dioecious red alga Pyropia pseudolinearis
journal, April 2019
- Yanagisawa, Ryo; Sekine, Naoki; Mizuta, Hiroyuki
- Journal of Applied Phycology, Vol. 31, Issue 5
Scalable Biosynthesis of the Seaweed Neurochemical, Kainic Acid
journal, June 2019
- Chekan, Jonathan R.; McKinnie, Shaun M. K.; Moore, Malia L.
- Angewandte Chemie International Edition, Vol. 58, Issue 25
A common garden experiment with Porphyra umbilicalis (Rhodophyta) evaluates methods to study spatial differences in the macroalgal microbiome
journal, August 2018
- Quigley, Charlotte T. C.; Morrison, Hilary G.; Mendonça, Inara R.
- Journal of Phycology, Vol. 54, Issue 5
Advancing the taxonomy of economically important red seaweeds (Rhodophyta)
text, January 2017
- Lim, Phaik-Eem; Yang, Li-En; Tan, Ji
- Taylor & Francis
Health Functionality and Quality Control of Laver (Porphyra, Pyropia): Current Issues and Future Perspectives as an Edible Seaweed
journal, December 2019
- Cho, Tae Jin; Rhee, Min Suk
- Marine Drugs, Vol. 18, Issue 1
The γ33 subunit of R-phycoerythrin from Gracilaria chilensis has a typical double linked phycourobilin similar to γ subunit
journal, April 2018
- Vásquez-Suárez, Aleikar; Lobos-González, Francisco; Cronshaw, Andrew
- PLOS ONE, Vol. 13, Issue 4