Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria
- Authors:
- Publication Date:
- Research Org.:
- Donald Danforth Plant Science Center, St. Louis, MO (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; USDA Agricultural Research Service (ARS)
- OSTI Identifier:
- 1369107
- Alternate Identifier(s):
- OSTI ID: 1365607; OSTI ID: 1423881
- Grant/Contract Number:
- SC0008769
- Resource Type:
- Published Article
- Journal Name:
- PLoS Genetics
- Additional Journal Information:
- Journal Name: PLoS Genetics Journal Volume: 13 Journal Issue: 6; Journal ID: ISSN 1553-7404
- Publisher:
- Public Library of Science (PLoS)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Quantitative trait loci; genetic loci; gene mapping; setaria; heredity; plant genetics; maize; flowering plants
Citation Formats
Feldman, Max J., Paul, Rachel E., Banan, Darshi, Barrett, Jennifer F., Sebastian, Jose, Yee, Muh-Ching, Jiang, Hui, Lipka, Alexander E., Brutnell, Thomas P., Dinneny, José R., Leakey, Andrew D. B., Baxter, Ivan, and Mauricio, ed., Rodney. Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria. United States: N. p., 2017.
Web. doi:10.1371/journal.pgen.1006841.
Feldman, Max J., Paul, Rachel E., Banan, Darshi, Barrett, Jennifer F., Sebastian, Jose, Yee, Muh-Ching, Jiang, Hui, Lipka, Alexander E., Brutnell, Thomas P., Dinneny, José R., Leakey, Andrew D. B., Baxter, Ivan, & Mauricio, ed., Rodney. Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria. United States. https://doi.org/10.1371/journal.pgen.1006841
Feldman, Max J., Paul, Rachel E., Banan, Darshi, Barrett, Jennifer F., Sebastian, Jose, Yee, Muh-Ching, Jiang, Hui, Lipka, Alexander E., Brutnell, Thomas P., Dinneny, José R., Leakey, Andrew D. B., Baxter, Ivan, and Mauricio, ed., Rodney. Fri .
"Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria". United States. https://doi.org/10.1371/journal.pgen.1006841.
@article{osti_1369107,
title = {Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria},
author = {Feldman, Max J. and Paul, Rachel E. and Banan, Darshi and Barrett, Jennifer F. and Sebastian, Jose and Yee, Muh-Ching and Jiang, Hui and Lipka, Alexander E. and Brutnell, Thomas P. and Dinneny, José R. and Leakey, Andrew D. B. and Baxter, Ivan and Mauricio, ed., Rodney},
abstractNote = {},
doi = {10.1371/journal.pgen.1006841},
journal = {PLoS Genetics},
number = 6,
volume = 13,
place = {United States},
year = {Fri Jun 23 00:00:00 EDT 2017},
month = {Fri Jun 23 00:00:00 EDT 2017}
}
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1371/journal.pgen.1006841
https://doi.org/10.1371/journal.pgen.1006841
Other availability
Cited by: 32 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Advances in the genetic dissection of plant cell walls: tools and resources available in Miscanthus
journal, January 2013
- Slavov, Gancho; Allison, Gordon; Bosch, Maurice
- Frontiers in Plant Science, Vol. 4
A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants
journal, March 2016
- Bergelson, Joy; Buckler, Edward S.; Ecker, Joseph R.
- The Plant Cell, Vol. 28, Issue 3
Loss of an MDR Transporter in Compact Stalks of Maize br2 and Sorghum dw3 Mutants
journal, October 2003
- Multani, D. S.
- Science, Vol. 302, Issue 5642
A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria
journal, October 2015
- Fahlgren, Noah; Feldman, Maximilian; Gehan, Malia A.
- Molecular Plant, Vol. 8, Issue 10
TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
journal, February 2014
- Glaubitz, Jeffrey C.; Casstevens, Terry M.; Lu, Fei
- PLoS ONE, Vol. 9, Issue 2
Genetic Variability and Trait Relationships in Switchgrass
journal, January 2004
- Das, Modan K.; Fuentes, Roger G.; Taliaferro, Charles M.
- Crop Science, Vol. 44, Issue 2
Development and Genetic Control of Plant Architecture and Biomass in the Panicoid Grass, Setaria
journal, March 2016
- Mauro-Herrera, Margarita; Doust, Andrew N.
- PLOS ONE, Vol. 11, Issue 3
Comparative analysis of QTLs affecting plant height and flowering among closely-related diploid and polyploid genomes
journal, October 2002
- Ming, Ray; Del Monte, Terrye A.; Hernandez, Eduardo
- Genome, Vol. 45, Issue 5
Setaria viridis : A Model for C 4 Photosynthesis
journal, August 2010
- Brutnell, Thomas P.; Wang, Lin; Swartwood, Kerry
- The Plant Cell, Vol. 22, Issue 8
Maize DELLA Proteins dwarf plant8 and dwarf plant9 as Modulators of Plant Development
journal, October 2010
- Lawit, Shai J.; Wych, Heidi M.; Xu, Deping
- Plant and Cell Physiology, Vol. 51, Issue 11
Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene
journal, June 2002
- Spielmeyer, W.; Ellis, M. H.; Chandler, P. M.
- Proceedings of the National Academy of Sciences, Vol. 99, Issue 13
Plant height and evolutionary games
journal, July 2003
- Falster, Daniel S.; Westoby, Mark
- Trends in Ecology & Evolution, Vol. 18, Issue 7
The Maize DWARF1 Encodes a Gibberellin 3-Oxidase and Is Dual Localized to the Nucleus and Cytosol
journal, October 2014
- Chen, Yi; Hou, Mingming; Liu, Lijuan
- Plant Physiology, Vol. 166, Issue 4
delayed flowering1 Encodes a Basic Leucine Zipper Protein That Mediates Floral Inductive Signals at the Shoot Apex in Maize
journal, October 2006
- Muszynski, Michael G.; Dam, Thao; Li, Bailin
- Plant Physiology, Vol. 142, Issue 4
Construction of RFLP-based maps of foxtail millet, Setaria italica (L.) P. Beauv.
journal, January 1998
- Wang, Z. M.; Devos, K. M.; Liu, C. J.
- Theoretical and Applied Genetics, Vol. 96, Issue 1
R/qtl: QTL mapping in experimental crosses
journal, May 2003
- Broman, K. W.; Wu, H.; Sen, S.
- Bioinformatics, Vol. 19, Issue 7
On the Adaptive Significance of Leaf Height in Forest Herbs
journal, September 1982
- Givnish, Thomas J.
- The American Naturalist, Vol. 120, Issue 3
Genetic analysis of drought tolerance in maize by molecular markers. II. Plant height and flowering
journal, July 1999
- Sari-Gorla, M.; Krajewski, P.; Di Fonzo, N.
- Theoretical and Applied Genetics, Vol. 99, Issue 1-2
Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population.
journal, September 1995
- Lin, Y. R.; Schertz, K. F.; Paterson, A. H.
- Genetics, Vol. 141, Issue 1
‘Green revolution’ genes encode mutant gibberellin response modulators
journal, July 1999
- Peng, Jinrong; Richards, Donald E.; Hartley, Nigel M.
- Nature, Vol. 400, Issue 6741
Genetic resolution and verification of quantitative trait loci for flowering and plant height with recombinant inbred lines of maize
journal, October 1996
- Austin, David F.; Lee, Michael
- Genome, Vol. 39, Issue 5
THE BIOLOGY OF CANADIAN WEEDS.: 70. Setaria viridis (L.) Beauv.
journal, July 1985
- Douglas, Brian J.; Morrison, Ian N.; Thomas, A. Gordon
- Canadian Journal of Plant Science, Vol. 65, Issue 3
Identification of Dw1, a Regulator of Sorghum Stem Internode Length
journal, March 2016
- Hilley, Josie; Truong, Sandra; Olson, Sara
- PLOS ONE, Vol. 11, Issue 3
Fitting Linear Mixed-Effects Models Using lme4
journal, January 2015
- Bates, Douglas; Mächler, Martin; Bolker, Ben
- Journal of Statistical Software, Vol. 67, Issue 1
Plant-plant signalling, the shade-avoidance response and competition
journal, November 1999
- Aphalo, P. J.; Ballare, C. L.; Scopel, A. L.
- Journal of Experimental Botany, Vol. 50, Issue 340
Mapping Quantitative Trait Loci Underlying Function-Valued Traits Using Functional Principal Component Analysis and Multi-Trait Mapping
journal, November 2015
- Kwak, Il-Youp; Moore, Candace R.; Spalding, Edgar P.
- G3: Genes|Genomes|Genetics, Vol. 6, Issue 1
Association of quantitative trait loci for plant height with major dwarfing genes in rice
journal, August 1996
- Huang, Ning; Courtois, Brigitte; Khush, Gurdev S.
- Heredity, Vol. 77, Issue 2
The indeterminate Gene Encodes a Zinc Finger Protein and Regulates a Leaf-Generated Signal Required for the Transition to Flowering in Maize
journal, May 1998
- Colasanti, Joseph; Yuan, Zhuang; Sundaresan, Venkatesan
- Cell, Vol. 93, Issue 4
A Review on Miscanthus Biomass Production and Composition for Bioenergy Use: Genotypic and Environmental Variability and Implications for Breeding
journal, September 2014
- Arnoult, Stéphanie; Brancourt-Hulmel, Maryse
- BioEnergy Research, Vol. 8, Issue 2
A Dwarf Mutant of Arabidopsis Generated by T-DNA Insertion Mutagenesis
journal, March 1989
- Feldmann, K. A.; Marks, M. D.; Christianson, M. L.
- Science, Vol. 243, Issue 4896
The Development of Plant-To-Plant Variability in Maize at Different Planting Densities
journal, July 1979
- Edmeades, G. O.; Daynard, T. B.
- Canadian Journal of Plant Science, Vol. 59, Issue 3
The Tangled1 Gene Is Required for Spatial Control of Cytoskeletal Arrays Associated with Cell Division during Maize Leaf Development
journal, November 1998
- Cleary, Ann L.; Smith, Laurie G.
- The Plant Cell, Vol. 10, Issue 11
High-Throughput Computer Vision Introduces the Time Axis to a Quantitative Trait Map of a Plant Growth Response
journal, August 2013
- Moore, Candace R.; Johnson, Logan S.; Kwak, Il-Youp
- Genetics, Vol. 195, Issue 3
Mapping dynamic QTL for plant height in triticale
journal, January 2014
- Würschum, Tobias; Liu, Wenxin; Busemeyer, Lucas
- BMC Genetics, Vol. 15, Issue 1
Cloning Knotted, the dominant morphological mutant in maize using Ds2 as a transposon tag
journal, January 1989
- Hake, Sarah; Vollbrecht, Erik; Freeling, Michael
- The EMBO Journal, Vol. 8, Issue 1
A fortunate choice: the history of Arabidopsis as a model plant
journal, November 2002
- Somerville, Chris; Koornneef, Maarten
- Nature Reviews Genetics, Vol. 3, Issue 11
Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids
journal, October 2008
- Lyons, Eric; Pedersen, Brent; Kane, Josh
- Plant Physiology, Vol. 148, Issue 4
Quantitative trait loci for plant height in four maize populations and their associations with qualitative genetic loci
journal, December 1991
- Beavis, W. D.; Grant, D.; Albertsen, M.
- Theoretical and Applied Genetics, Vol. 83, Issue 2
Rapid isolation of high molecular weight plant DNA
journal, January 1980
- Murray, M. G.; Thompson, W. F.
- Nucleic Acids Research, Vol. 8, Issue 19
Fast gapped-read alignment with Bowtie 2
journal, March 2012
- Langmead, Ben; Salzberg, Steven L.
- Nature Methods, Vol. 9, Issue 4
A Tandem Array of ent -Kaurene Synthases in Maize with Roles in Gibberellin and More Specialized Metabolism
journal, November 2015
- Fu, Jingye; Ren, Fei; Lu, Xuan
- Plant Physiology, Vol. 170, Issue 2
Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa)
journal, January 1998
- Devos, K. M.; Wang, Z. M.; Beales, J.
- Theoretical and Applied Genetics, Vol. 96, Issue 1
Genetic Control and Comparative Genomic Analysis of Flowering Time in Setaria (Poaceae)
journal, February 2013
- Mauro-Herrera, Margarita; Wang, Xuewen; Barbier, Hugues
- G3: Genes|Genomes|Genetics, Vol. 3, Issue 2
Cloning and characterization of the maize An1 gene.
journal, January 1995
- Bensen, R. J.; Johal, G. S.; Crane, V. C.
- The Plant Cell, Vol. 7, Issue 1
Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
journal, February 2012
- Poland, Jesse A.; Brown, Patrick J.; Sorrells, Mark E.
- PLoS ONE, Vol. 7, Issue 2
Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha -subunit of GTP-binding protein
journal, August 1999
- Ashikari, M.; Wu, J.; Yano, M.
- Proceedings of the National Academy of Sciences, Vol. 96, Issue 18
Reference genome sequence of the model plant Setaria
journal, May 2012
- Bennetzen, Jeffrey L.; Schmutz, Jeremy; Wang, Hao
- Nature Biotechnology, Vol. 30, Issue 6
Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment
journal, November 2013
- Des Marais, David L.; Hernandez, Kyle M.; Juenger, Thomas E.
- Annual Review of Ecology, Evolution, and Systematics, Vol. 44, Issue 1
The ecological significance of long-distance water transport: short-term regulation, long-term acclimation and the hydraulic costs of stature across plant life forms
journal, January 2003
- Mencuccini, M.
- Plant, Cell and Environment, Vol. 26, Issue 1
Genetic Insight into Yield-Associated Traits of Wheat Grown in Multiple Rain-Fed Environments
journal, February 2012
- Wu, Xianshan; Chang, Xiaoping; Jing, Ruilian
- PLoS ONE, Vol. 7, Issue 2
Brd1 Gene in Maize Encodes a Brassinosteroid C-6 Oxidase
journal, January 2012
- Makarevitch, Irina; Thompson, Addie; Muehlbauer, Gary J.
- PLoS ONE, Vol. 7, Issue 1
The Genetic Architecture Of Maize Height
journal, February 2014
- Peiffer, Jason A.; Romay, Maria C.; Gore, Michael A.
- Genetics, Vol. 196, Issue 4
Cloning of a Mutable bz2 Allele of Maize by Transposon Tagging and Differential Hybridization
journal, December 1987
- McLaughlin, Margaret; Walbot, Virginia
- Genetics, Vol. 117, Issue 4
The maize Dwarf3 gene encodes a cytochrome P450-mediated early step in Gibberellin biosynthesis.
journal, August 1995
- Winkler, R. G.; Helentjaris, T.
- The Plant Cell, Vol. 7, Issue 8
RISING ATMOSPHERIC CARBON DIOXIDE: Plants FACE the Future
journal, June 2004
- Long, Stephen P.; Ainsworth, Elizabeth A.; Rogers, Alistair
- Annual Review of Plant Biology, Vol. 55, Issue 1
Population genetics of Setaria viridis , a new model system
journal, September 2014
- Huang, Pu; Feldman, Maximilian; Schroder, Stephan
- Molecular Ecology, Vol. 23, Issue 20
Phenomics – technologies to relieve the phenotyping bottleneck
journal, December 2011
- Furbank, Robert T.; Tester, Mark
- Trends in Plant Science, Vol. 16, Issue 12
Molecular Dissection of Developmental Behavior of Plant Height in Rice (Oryza sativa L.)
journal, November 1998
- Yan, Juqiang; Zhu, Jun; He, Cixin
- Genetics, Vol. 150, Issue 3
Brachypodium distachyon and Setaria viridis : Model Genetic Systems for the Grasses
journal, April 2015
- Brutnell, Thomas P.; Bennetzen, Jeffrey L.; Vogel, John P.
- Annual Review of Plant Biology, Vol. 66, Issue 1
How to fit nonlinear plant growth models and calculate growth rates: an update for ecologists: Nonlinear plant growth models
journal, September 2011
- Paine, C. E. Timothy; Marthews, Toby R.; Vogt, Deborah R.
- Methods in Ecology and Evolution, Vol. 3, Issue 2
High-Throughput Phenotyping to Detect Drought Tolerance QTL in Wild Barley Introgression Lines
journal, May 2014
- Honsdorf, Nora; March, Timothy John; Berger, Bettina
- PLoS ONE, Vol. 9, Issue 5
From dwarves to giants? Plant height manipulation for biomass yield
journal, August 2009
- Salas Fernandez, Maria G.; Becraft, Philip W.; Yin, Yanhai
- Trends in Plant Science, Vol. 14, Issue 8
Brassinosteroid control of sex determination in maize
journal, November 2011
- Hartwig, T.; Chuck, G. S.; Fujioka, S.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 49
The Maize Viviparous8 Locus, Encoding a Putative ALTERED MERISTEM PROGRAM1-Like Peptidase, Regulates Abscisic Acid Accumulation and Coordinates Embryo and Endosperm Development
journal, January 2008
- Suzuki, Masaharu; Latshaw, Susan; Sato, Yutaka
- Plant Physiology, Vol. 146, Issue 3
Yield Components of Biomass in Switchgrass
journal, January 2008
- Boe, Arvid; Beck, Dwayne L.
- Crop Science, Vol. 48, Issue 4
Characterization and Fine Mapping of ( ) in Foxtail Millet
journal, January 2016
- Xue, Cuixia; Zhi, Hui; Fang, Xuejiao
- Crop Science, Vol. 56, Issue 1