Pseudomonas fluorescens transportome is linked to strain-specific plant growth promotion in Aspen seedlings under nutrient stress
Abstract
Diverse communities of bacteria colonize plant roots and the rhizosphere. Many of these rhizobacteria are symbionts and provide plant growth promotion (PGP) services, protecting the plant from biotic and abiotic stresses and increasing plant productivity by providing access to nutrients that would otherwise be unavailable to roots. In return, these symbiotic bacteria receive photosynthetically-derived carbon (C), in the form of sugars and organic acids, from plant root exudates. PGP activities have been characterized for a variety of forest tree species and are important in C cycling and sequestration in terrestrial ecosystems. The molecular mechanisms of these PGP activities, however, are less well-known. In a previous analysis of Pseudomonas genomes, we found that the bacterial transportome, the aggregate activity of a bacteria's transmembrane transporters, was most predictive for the ecological niche of Pseudomonads in the rhizosphere. Here, we used Populus tremuloides Michx. (trembling aspen) seedlings inoculated with one of three Pseudomonas fluorescens strains (Pf0-1, SBW25, and WH6) and one Pseudomonas protegens (Pf-5) as a laboratory model to further investigate the relationships between the predicted transportomic capacity of a bacterial strain and its observed PGP effects in laboratory cultures. Conditions of low nitrogen (N) or low phosphorus (P) availability and the correspondingmore »
- Authors:
-
- Argonne National Lab. (ANL), Lemont, IL (United States)
- West Virginia Univ., Morgantown, WV (United States)
- Argonne National Lab. (ANL), Lemont, IL (United States); Univ. of Illinois at Chicago, Chicago, IL (United States)
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1366508
- Grant/Contract Number:
- AC02-06CH11357
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Plant Science
- Additional Journal Information:
- Journal Volume: 8; Journal ID: ISSN 1664-462X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES; 59 BASIC BIOLOGICAL SCIENCES; plant growth promotion; Aspen; Pseudomonas; computational modeling; nitrogen; phosphorus; transportomics
Citation Formats
Shinde, Shalaka, Cumming, Jonathan R., Collart, Frank R., Noirot, Philippe H., and Larsen, Peter E. Pseudomonas fluorescens transportome is linked to strain-specific plant growth promotion in Aspen seedlings under nutrient stress. United States: N. p., 2017.
Web. doi:10.3389/fpls.2017.00348.
Shinde, Shalaka, Cumming, Jonathan R., Collart, Frank R., Noirot, Philippe H., & Larsen, Peter E. Pseudomonas fluorescens transportome is linked to strain-specific plant growth promotion in Aspen seedlings under nutrient stress. United States. https://doi.org/10.3389/fpls.2017.00348
Shinde, Shalaka, Cumming, Jonathan R., Collart, Frank R., Noirot, Philippe H., and Larsen, Peter E. Tue .
"Pseudomonas fluorescens transportome is linked to strain-specific plant growth promotion in Aspen seedlings under nutrient stress". United States. https://doi.org/10.3389/fpls.2017.00348. https://www.osti.gov/servlets/purl/1366508.
@article{osti_1366508,
title = {Pseudomonas fluorescens transportome is linked to strain-specific plant growth promotion in Aspen seedlings under nutrient stress},
author = {Shinde, Shalaka and Cumming, Jonathan R. and Collart, Frank R. and Noirot, Philippe H. and Larsen, Peter E.},
abstractNote = {Diverse communities of bacteria colonize plant roots and the rhizosphere. Many of these rhizobacteria are symbionts and provide plant growth promotion (PGP) services, protecting the plant from biotic and abiotic stresses and increasing plant productivity by providing access to nutrients that would otherwise be unavailable to roots. In return, these symbiotic bacteria receive photosynthetically-derived carbon (C), in the form of sugars and organic acids, from plant root exudates. PGP activities have been characterized for a variety of forest tree species and are important in C cycling and sequestration in terrestrial ecosystems. The molecular mechanisms of these PGP activities, however, are less well-known. In a previous analysis of Pseudomonas genomes, we found that the bacterial transportome, the aggregate activity of a bacteria's transmembrane transporters, was most predictive for the ecological niche of Pseudomonads in the rhizosphere. Here, we used Populus tremuloides Michx. (trembling aspen) seedlings inoculated with one of three Pseudomonas fluorescens strains (Pf0-1, SBW25, and WH6) and one Pseudomonas protegens (Pf-5) as a laboratory model to further investigate the relationships between the predicted transportomic capacity of a bacterial strain and its observed PGP effects in laboratory cultures. Conditions of low nitrogen (N) or low phosphorus (P) availability and the corresponding replete media conditions were investigated. We measured phenotypic and biochemical parameters of P. tremuloides seedlings and correlated P fluorescens strain-specific transportomic capacities with P. tremuloides seedling phenotype to predict the strain and nutrient environment-specific transporter functions that lead to experimentally observed, strain, and media-specific PGP activities and the capacity to protect plants against nutrient stress. These predicted transportomic functions fall in three groups: (i) transport of compounds that modulate aspen seedling root architecture, (ii) transport of compounds that help to mobilize nutrients for aspen roots, and (iii) transporters that enable bacterial acquisition of C sources from seedling root exudates. Lastly, these predictions point to specific molecular mechanisms of PGP activities that can be directly tested through future, hypothesis-driven biological experiments.},
doi = {10.3389/fpls.2017.00348},
journal = {Frontiers in Plant Science},
number = ,
volume = 8,
place = {United States},
year = {Tue Mar 21 00:00:00 EDT 2017},
month = {Tue Mar 21 00:00:00 EDT 2017}
}
Web of Science
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CRISPR interference to interrogate genes that control biofilm formation in Pseudomonas fluorescens
journal, November 2019
- Noirot-Gros, Marie-Francoise; Forrester, Sara; Malato, Grace
- Scientific Reports, Vol. 9, Issue 1
Engineering root microbiomes for healthier crops and soils using beneficial, environmentally safe bacteria
journal, February 2019
- Martínez-Hidalgo, Pilar; Maymon, Maskit; Pule-Meulenberg, Flora
- Canadian Journal of Microbiology, Vol. 65, Issue 2
Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings
journal, January 2019
- Shinde, Shalaka; Zerbs, Sarah; Collart, Frank R.
- BMC Plant Biology, Vol. 19, Issue 1
Dynamics of Aspen Roots Colonization by Pseudomonads Reveals Strain-Specific and Mycorrhizal-Specific Patterns of Biofilm Formation
journal, May 2018
- Noirot-Gros, Marie-Francoise; Shinde, Shalaka; Larsen, Peter E.
- Frontiers in Microbiology, Vol. 9