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Title: Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Abstract

The class Tremellomycete (Agaricomycotina) encompasses more than 380 fungi. Although there are a few edible Tremella spp., the only species with current biotechnological use is the astaxanthin-producing yeast Phaffia rhodozyma (Cystofilobasidiales). Besides astaxanthin, a carotenoid pigment with potent antioxidant activity and great value for aquaculture and pharmaceutical industries, P. rhodozyma possesses multiple exceptional traits of fundamental and applied interest. The aim of this study was to obtain, and analyze two new genome sequences of representative strains from the northern (CBS 7918T, the type strain) and southern hemispheres (CRUB 1149) and compre them to a previously published genome sequence (strain CBS 6938). Furthermore, photoprotection and antioxidant related genes, as well as genes involved in sexual reproduction were analyzed.

Authors:
 [1];  [1];  [2];  [2];  [3];  [2];  [2]; ORCiD logo [1]
  1. Instituto Andino-Patagonico de Tecnologias Biologicas y Geoambientales (IPATEC), Bariloche (Argentina)
  2. Univ. Nova de Lisboa, Caparica (Portugal)
  3. Univ. of Wisconsin, Madison, WI (United States)
Publication Date:
Research Org.:
Univ. of Wisconsin, Madison, WI (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1363950
Grant/Contract Number:  
FC02-07ER64494
Resource Type:
Accepted Manuscript
Journal Name:
BMC Genomics
Additional Journal Information:
Journal Volume: 17; Journal Issue: 1; Journal ID: ISSN 1471-2164
Publisher:
Springer
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; Xanthophyllomyces dendrorhous; mycosporines; aquaculture; phylogenomics; basidiomycete; mating type; photoprotection; yeast; type strain

Citation Formats

Bellora, Nicolas, Moline, Martin, David-Palma, Marcia, Coelho, Marco A., Hittinger, Chris Todd, Sampaio, Jose P., Goncalves, Paula, and Libkind, Diego. Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma. United States: N. p., 2016. Web. doi:10.1186/s12864-016-3244-7.
Bellora, Nicolas, Moline, Martin, David-Palma, Marcia, Coelho, Marco A., Hittinger, Chris Todd, Sampaio, Jose P., Goncalves, Paula, & Libkind, Diego. Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma. United States. doi:10.1186/s12864-016-3244-7.
Bellora, Nicolas, Moline, Martin, David-Palma, Marcia, Coelho, Marco A., Hittinger, Chris Todd, Sampaio, Jose P., Goncalves, Paula, and Libkind, Diego. Wed . "Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma". United States. doi:10.1186/s12864-016-3244-7. https://www.osti.gov/servlets/purl/1363950.
@article{osti_1363950,
title = {Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma},
author = {Bellora, Nicolas and Moline, Martin and David-Palma, Marcia and Coelho, Marco A. and Hittinger, Chris Todd and Sampaio, Jose P. and Goncalves, Paula and Libkind, Diego},
abstractNote = {The class Tremellomycete (Agaricomycotina) encompasses more than 380 fungi. Although there are a few edible Tremella spp., the only species with current biotechnological use is the astaxanthin-producing yeast Phaffia rhodozyma (Cystofilobasidiales). Besides astaxanthin, a carotenoid pigment with potent antioxidant activity and great value for aquaculture and pharmaceutical industries, P. rhodozyma possesses multiple exceptional traits of fundamental and applied interest. The aim of this study was to obtain, and analyze two new genome sequences of representative strains from the northern (CBS 7918T, the type strain) and southern hemispheres (CRUB 1149) and compre them to a previously published genome sequence (strain CBS 6938). Furthermore, photoprotection and antioxidant related genes, as well as genes involved in sexual reproduction were analyzed.},
doi = {10.1186/s12864-016-3244-7},
journal = {BMC Genomics},
number = 1,
volume = 17,
place = {United States},
year = {2016},
month = {11}
}

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    Works referencing / citing this record:

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