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Title: Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls

Abstract

Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes produce chemically diverse, stable SOM. As a result, we show that SOM accumulation is driven by distinct microbial communities more so than clay mineralogy, where microbial-derived SOM accumulation is greatest in soils with higher fungal abundances and more efficient microbial biomass production.

Authors:
 [1];  [2];  [2]
  1. Univ. of New Hampshire, Durham, NH (United States); Colorado State Univ., Fort Collins, CO (United States)
  2. Univ. of New Hampshire, Durham, NH (United States)
Publication Date:
Research Org.:
Univ. of New Hampshire, Durham, NH (United States)
Sponsoring Org.:
USDOE Office of Energy Efficiency and Renewable Energy (EERE)
OSTI Identifier:
1363941
Grant/Contract Number:  
FC02-07ER64494
Resource Type:
Accepted Manuscript
Journal Name:
Nature Communications
Additional Journal Information:
Journal Volume: 7; Journal ID: ISSN 2041-1723
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 54 ENVIRONMENTAL SCIENCES; carbon cycle; microbial ecology

Citation Formats

Kallenbach, Cynthia M., Frey, Serita D., and Grandy, A. Stuart. Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls. United States: N. p., 2016. Web. doi:10.1038/ncomms13630.
Kallenbach, Cynthia M., Frey, Serita D., & Grandy, A. Stuart. Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls. United States. https://doi.org/10.1038/ncomms13630
Kallenbach, Cynthia M., Frey, Serita D., and Grandy, A. Stuart. Mon . "Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls". United States. https://doi.org/10.1038/ncomms13630. https://www.osti.gov/servlets/purl/1363941.
@article{osti_1363941,
title = {Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls},
author = {Kallenbach, Cynthia M. and Frey, Serita D. and Grandy, A. Stuart},
abstractNote = {Soil organic matter (SOM) and the carbon and nutrients therein drive fundamental submicron- to global-scale biogeochemical processes and influence carbon-climate feedbacks. Consensus is emerging that microbial materials are an important constituent of stable SOM, and new conceptual and quantitative SOM models are rapidly incorporating this view. However, direct evidence demonstrating that microbial residues account for the chemistry, stability and abundance of SOM is still lacking. Further, emerging models emphasize the stabilization of microbial-derived SOM by abiotic mechanisms, while the effects of microbial physiology on microbial residue production remain unclear. Here we provide the first direct evidence that soil microbes produce chemically diverse, stable SOM. As a result, we show that SOM accumulation is driven by distinct microbial communities more so than clay mineralogy, where microbial-derived SOM accumulation is greatest in soils with higher fungal abundances and more efficient microbial biomass production.},
doi = {10.1038/ncomms13630},
journal = {Nature Communications},
number = ,
volume = 7,
place = {United States},
year = {Mon Nov 28 00:00:00 EST 2016},
month = {Mon Nov 28 00:00:00 EST 2016}
}

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Composition-Dependent Sorptive Fractionation of Anthropogenic Dissolved Organic Matter by Fe(III)-Montmorillonite
journal, March 2018


What Agriculture Can Learn from Native Ecosystems in Building Soil Organic Matter: A Review
journal, April 2017

  • Crews, Timothy; Rumsey, Brian
  • Sustainability, Vol. 9, Issue 4
  • DOI: 10.3390/su9040578

Constraining carbon and nutrient flows in soil with ecological stoichiometry
text, January 2019


Multiple models and experiments underscore large uncertainty in soil carbon dynamics
journal, October 2018

  • Sulman, Benjamin N.; Moore, Jessica A. M.; Abramoff, Rose
  • Biogeochemistry, Vol. 141, Issue 2
  • DOI: 10.1007/s10533-018-0509-z

Sub-micron level investigation reveals the inaccessibility of stabilized carbon in soil microaggregates
journal, November 2018

  • Arachchige, Pavithra S. Pitumpe; Hettiarachchi, Ganga M.; Rice, Charles W.
  • Scientific Reports, Vol. 8, Issue 1
  • DOI: 10.1038/s41598-018-34981-9

Dark microbial CO 2 fixation in temperate forest soils increases with CO 2 concentration
journal, December 2019

  • Spohn, Marie; Müller, Karolin; Höschen, Carmen
  • Global Change Biology, Vol. 26, Issue 3
  • DOI: 10.1111/gcb.14937

Nitrogen fertilization modifies organic transformations and coatings on soil biogeochemical interfaces through microbial polysaccharides synthesis
other, January 2019

  • Huang, Xizhi; Guggenberger, Georg; Kuzyakov, Yakov
  • London : Nature Publishing Group
  • DOI: 10.15488/10477

Microbial and abiotic controls on mineral-associated organic matter in soil profiles along an ecosystem gradient
other, January 2019

  • Mikutta, Robert; Turner, Stephanie; Schippers, Axel
  • Berlin : Springer
  • DOI: 10.15488/8622

The Millennial model: in search of measurable pools and transformations for modeling soil carbon in the new century
journal, December 2017


Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter
journal, September 2017

  • Harden, Jennifer W.; Hugelius, Gustaf; Ahlström, Anders
  • Global Change Biology, Vol. 24, Issue 2
  • DOI: 10.1111/gcb.13896

Tree mycorrhizal type predicts within-site variability in the storage and distribution of soil organic matter
journal, April 2018

  • Craig, Matthew E.; Turner, Benjamin L.; Liang, Chao
  • Global Change Biology, Vol. 24, Issue 8
  • DOI: 10.1111/gcb.14132

Niche differentiation is spatially and temporally regulated in the rhizosphere
journal, January 2020


Microbial community-level regulation explains soil carbon responses to long-term litter manipulations
journal, October 2017


Online supercritical fluid extraction mass spectrometry (SFE-LC-FTMS) for sensitive characterization of soil organic matter
journal, January 2019

  • Shen, Yufeng; Zhao, Rui; Tolić, Nikola
  • Faraday Discussions, Vol. 218
  • DOI: 10.1039/c9fd00011a

Constraining carbon and nutrient flows in soil with ecological stoichiometry
text, January 2019


Tamm Review: Influence of forest management activities on soil organic carbon stocks: A knowledge synthesis
journal, June 2020


Microbial community-level regulation explains soil carbon responses to long-term litter manipulations
journal, October 2017


Divergent accumulation of microbial necromass and plant lignin components in grassland soils
journal, August 2018


Land use driven change in soil pH affects microbial carbon cycling processes
journal, September 2018


Persistence of soil organic carbon caused by functional complexity
journal, July 2020

  • Lehmann, Johannes; Hansel, Colleen M.; Kaiser, Christina
  • Nature Geoscience, Vol. 13, Issue 8
  • DOI: 10.1038/s41561-020-0612-3

Sub-micron level investigation reveals the inaccessibility of stabilized carbon in soil microaggregates
journal, November 2018

  • Arachchige, Pavithra S. Pitumpe; Hettiarachchi, Ganga M.; Rice, Charles W.
  • Scientific Reports, Vol. 8, Issue 1
  • DOI: 10.1038/s41598-018-34981-9

Microbial and abiotic controls on mineral-associated organic matter in soil profiles along an ecosystem gradient
journal, July 2019


Long-term Management Effects and Temperature Sensitivity of Soil Organic Carbon in Grassland and Agricultural Soils
journal, August 2019


Generic parameters of first-order kinetics accurately describe soil organic matter decay in bare fallow soils over a wide edaphic and climatic range
journal, December 2019


Nitrogen fertilization modifies organic transformations and coatings on soil biogeochemical interfaces through microbial polysaccharides synthesis
journal, December 2019


Soil microbiome transfer method affects microbiome composition, including dominant microorganisms, in a novel environment
journal, May 2017

  • Howard, Mia M.; Bell, Terrence H.; Kao-Kniffin, Jenny
  • FEMS Microbiology Letters, Vol. 364, Issue 11
  • DOI: 10.1093/femsle/fnx092

Increased microbial growth, biomass, and turnover drive soil organic carbon accumulation at higher plant diversity
journal, August 2019

  • Prommer, Judith; Walker, Tom W. N.; Wanek, Wolfgang
  • Global Change Biology, Vol. 26, Issue 2
  • DOI: 10.1111/gcb.14777

Control of the Nitrogen Isotope Composition of the Fungal Biomass: Evidence of Microbial Nitrogen Use Efficiency
journal, January 2019

  • Shinoda, Kazuki; Yano, Midori; Yoh, Muneoki
  • Microbes and Environments, Vol. 34, Issue 1
  • DOI: 10.1264/jsme2.me18082

Examining mineral-associated soil organic matter pools through depth in harvested forest soil profiles
journal, November 2018


Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use
journal, November 2017

  • Arcand, Melissa M.; Levy-Booth, David J.; Helgason, Bobbi L.
  • Frontiers in Microbiology, Vol. 8
  • DOI: 10.3389/fmicb.2017.02293

Carbon Amendments Induce Shifts in Nutrient Use, Inhibitory, and Resistance Phenotypes Among Soilborne Streptomyces
journal, March 2019

  • Dundore-Arias, José Pablo; Felice, Laura; Dill-Macky, Ruth
  • Frontiers in Microbiology, Vol. 10
  • DOI: 10.3389/fmicb.2019.00498

Managing Agroecosystems for Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, and a Path Forward
journal, May 2019

  • Kallenbach, Cynthia M.; Wallenstein, Matthew D.; Schipanksi, Meagan E.
  • Frontiers in Microbiology, Vol. 10
  • DOI: 10.3389/fmicb.2019.01146

Variation in the Molecular Structure and Radiocarbon Abundance of Mineral-Associated Organic Matter across a Lithosequence of Forest Soils
journal, June 2018


Cover Crop Residue Amount and Quality Effects on Soil Organic Carbon Mineralization
journal, December 2017

  • Ghimire, Binod; Ghimire, Rajan; VanLeeuwen, Dawn
  • Sustainability, Vol. 9, Issue 12
  • DOI: 10.3390/su9122316