Solvent-exposed lipid tail protrusions depend on lipid membrane composition and curvature
- Authors:
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1361085
- Alternate Identifier(s):
- OSTI ID: 1336492
- Grant/Contract Number:
- FG02-97ER25308
- Resource Type:
- Published Article
- Journal Name:
- Biochimica et Biophysica Acta. Biomembranes
- Additional Journal Information:
- Journal Name: Biochimica et Biophysica Acta. Biomembranes Journal Volume: 1858 Journal Issue: 6; Journal ID: ISSN 0005-2736
- Publisher:
- Elsevier
- Country of Publication:
- Netherlands
- Language:
- English
Citation Formats
Tahir, Mukarram A., Van Lehn, Reid C., Choi, S. H., and Alexander-Katz, Alfredo. Solvent-exposed lipid tail protrusions depend on lipid membrane composition and curvature. Netherlands: N. p., 2016.
Web. doi:10.1016/j.bbamem.2016.01.026.
Tahir, Mukarram A., Van Lehn, Reid C., Choi, S. H., & Alexander-Katz, Alfredo. Solvent-exposed lipid tail protrusions depend on lipid membrane composition and curvature. Netherlands. https://doi.org/10.1016/j.bbamem.2016.01.026
Tahir, Mukarram A., Van Lehn, Reid C., Choi, S. H., and Alexander-Katz, Alfredo. Wed .
"Solvent-exposed lipid tail protrusions depend on lipid membrane composition and curvature". Netherlands. https://doi.org/10.1016/j.bbamem.2016.01.026.
@article{osti_1361085,
title = {Solvent-exposed lipid tail protrusions depend on lipid membrane composition and curvature},
author = {Tahir, Mukarram A. and Van Lehn, Reid C. and Choi, S. H. and Alexander-Katz, Alfredo},
abstractNote = {},
doi = {10.1016/j.bbamem.2016.01.026},
journal = {Biochimica et Biophysica Acta. Biomembranes},
number = 6,
volume = 1858,
place = {Netherlands},
year = {Wed Jun 01 00:00:00 EDT 2016},
month = {Wed Jun 01 00:00:00 EDT 2016}
}
Free Publicly Available Full Text
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https://doi.org/10.1016/j.bbamem.2016.01.026
https://doi.org/10.1016/j.bbamem.2016.01.026
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Cited by: 19 works
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Works referenced in this record:
Membrane-Embedded Nanoparticles Induce Lipid Rearrangements Similar to Those Exhibited by Biological Membrane Proteins
journal, October 2014
- Van Lehn, Reid C.; Alexander-Katz, Alfredo
- The Journal of Physical Chemistry B, Vol. 118, Issue 44
Insights into the Molecular Mechanism of Membrane Fusion from Simulation: Evidence for the Association of Splayed Tails
journal, October 2003
- Stevens, Mark J.; Hoh, Jan H.; Woolf, Thomas B.
- Physical Review Letters, Vol. 91, Issue 18
Energetics of Vesicle Fusion Intermediates: Comparison of Calculations with Observed Effects of Osmotic and Curvature Stresses
journal, May 2004
- Malinin, Vladimir S.; Lentz, Barry R.
- Biophysical Journal, Vol. 86, Issue 5
Molecular Dynamics Simulations of Lipid Vesicle Fusion in Atomic Detail
journal, June 2007
- Knecht, Volker; Marrink, Siewert-Jan
- Biophysical Journal, Vol. 92, Issue 12
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
journal, February 2008
- Hess, Berk; Kutzner, Carsten; van der Spoel, David
- Journal of Chemical Theory and Computation, Vol. 4, Issue 3
Membrane fusion: what may transpire at the atomic level
journal, June 2002
- Jeremic, A.
- Journal of Biological Physics and Chemistry, Vol. 4, Issue 3
Computer simulations of fusion, fission and shape deformation in lipid membranes
journal, January 2012
- Yang, Kai; Ma, Yu-qiang
- Soft Matter, Vol. 8, Issue 3
Lipid Organization of the Plasma Membrane
journal, October 2014
- Ingólfsson, Helgi I.; Melo, Manuel N.; van Eerden, Floris J.
- Journal of the American Chemical Society, Vol. 136, Issue 41
Free energy analysis along the stalk mechanism of membrane fusion
journal, January 2014
- Kawamoto, Shuhei; Shinoda, Wataru
- Soft Matter, Vol. 10, Issue 17
P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
journal, December 2007
- Hess, Berk
- Journal of Chemical Theory and Computation, Vol. 4, Issue 1
Multi-step formation of a hemifusion diaphragm for vesicle fusion revealed by all-atom molecular dynamics simulations
journal, June 2014
- Tsai, Hui-Hsu Gavin; Chang, Che-Ming; Lee, Jian-Bin
- Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1838, Issue 6
Curvature effects on lipid packing and dynamics in liposomes revealed by coarse grained molecular dynamics simulations
journal, January 2009
- Risselada, H. Jelger; Marrink, Siewert J.
- Physical Chemistry Chemical Physics, Vol. 11, Issue 12
Visualizing Association of N-Ras in Lipid Microdomains: Influence of Domain Structure and Interfacial Adsorption
journal, January 2006
- Nicolini, Chiara; Baranski, Jörg; Schlummer, Stefanie
- Journal of the American Chemical Society, Vol. 128, Issue 1
Permeability of lipid bilayers to water and ionic solutes
journal, June 1986
- Deamer, David W.; Bramhall, John
- Chemistry and Physics of Lipids, Vol. 40, Issue 2-4
Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics
journal, November 2007
- Kasson, Peter M.; Pande, Vijay S.
- PLoS Computational Biology, Vol. 3, Issue 11
Time scales of membrane fusion revealed by direct imaging of vesicle fusion with high temporal resolution
journal, October 2006
- Haluska, C. K.; Riske, K. A.; Marchi-Artzner, V.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 43
Thermodynamics of flip-flop and desorption for a systematic series of phosphatidylcholine lipids
journal, January 2009
- Sapay, Nicolas; Bennett, W. F. Drew; Tieleman, D. Peter
- Soft Matter, Vol. 5, Issue 17
Splaying of Aliphatic Tails Plays a Central Role in Barrier Crossing During Liposome Fusion
journal, September 2010
- Mirjanian, Dina; Dickey, Allison N.; Hoh, Jan H.
- The Journal of Physical Chemistry B, Vol. 114, Issue 34
Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails
journal, June 2010
- Kasson, Peter M.; Lindahl, Erik; Pande, Vijay S.
- PLoS Computational Biology, Vol. 6, Issue 6
Activation Thermodynamics of Poly(Ethylene Glycol)-Mediated Model Membrane Fusion Support Mechanistic Models of Stalk and Pore Formation
journal, June 2012
- Chakraborty, Hirak; Tarafdar, Pradip K.; Bruno, Michael J.
- Biophysical Journal, Vol. 102, Issue 12
Pathway of Membrane Fusion with Two Tension-Dependent Energy Barriers
journal, May 2007
- Grafmüller, Andrea; Shillcock, Julian; Lipowsky, Reinhard
- Physical Review Letters, Vol. 98, Issue 21
Conical Lipids in Flat Bilayers Induce Packing Defects Similar to that Induced by Positive Curvature
journal, February 2013
- Vamparys, Lydie; Gautier, Romain; Vanni, Stefano
- Biophysical Journal, Vol. 104, Issue 3
SNARE-mediated membrane fusion
journal, February 2001
- Chen, Yu A.; Scheller, Richard H.
- Nature Reviews Molecular Cell Biology, Vol. 2, Issue 2
Endocytic recycling
journal, February 2004
- Maxfield, Frederick R.; McGraw, Timothy E.
- Nature Reviews Molecular Cell Biology, Vol. 5, Issue 2
Solvent-Exposed Tails as Prestalk Transition States for Membrane Fusion at Low Hydration
journal, May 2010
- Smirnova, Yuliya G.; Marrink, Siewert-Jan; Lipowsky, Reinhard
- Journal of the American Chemical Society, Vol. 132, Issue 19
Direct Visualization of Large and Protein-Free Hemifusion Diaphragms
journal, April 2010
- Nikolaus, Jörg; Stöckl, Martin; Langosch, Dieter
- Biophysical Journal, Vol. 98, Issue 7
Lipid Bilayers: The Effect of Force Field on Ordering and Dynamics
journal, October 2012
- Poger, David; Mark, Alan E.
- Journal of Chemical Theory and Computation, Vol. 8, Issue 11
Size of Supramolecular SNARE Complex: Membrane-Directed Self-Assembly
journal, July 2005
- Cho, Won Jin; Jeremic, Aleksandar; Jena, Bhanu P.
- Journal of the American Chemical Society, Vol. 127, Issue 29
Hydration repulsion between biomembranes results from an interplay of dehydration and depolarization
journal, August 2012
- Schneck, E.; Sedlmeier, F.; Netz, R. R.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 36
Lipid tail protrusions mediate the insertion of nanoparticles into model cell membranes
journal, July 2014
- Van Lehn, Reid C.; Ricci, Maria; Silva, Paulo H. J.
- Nature Communications, Vol. 5, Issue 1
Transition Path from Two Apposed Membranes to a Stalk Obtained by a Combination of Particle Simulations and String Method
journal, May 2012
- Müller, Marcus; Smirnova, Yuliya G.; Marelli, Giovanni
- Physical Review Letters, Vol. 108, Issue 22
Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models
journal, March 2013
- Larsson, Per; Kasson, Peter M.
- PLoS Computational Biology, Vol. 9, Issue 3
Protein-Lipid Interplay in Fusion and Fission of Biological Membranes
journal, June 2003
- Chernomordik, Leonid V.; Kozlov, Michael M.
- Annual Review of Biochemistry, Vol. 72, Issue 1
Equinatoxin II Permeabilizing Activity Depends on the Presence of Sphingomyelin and Lipid Phase Coexistence
journal, July 2008
- Schön, Peter; García-Sáez, Ana J.; Malovrh, Petra
- Biophysical Journal, Vol. 95, Issue 2
Mechanics of membrane fusion
journal, July 2008
- Chernomordik, Leonid V.; Kozlov, Michael M.
- Nature Structural & Molecular Biology, Vol. 15, Issue 7
A new force field for simulating phosphatidylcholine bilayers
journal, October 2009
- Poger, David; Van Gunsteren, Wilfred F.; Mark, Alan E.
- Journal of Computational Chemistry, Vol. 31, Issue 6
Line-Tension Controlled Mechanism for Influenza Fusion
journal, June 2012
- Risselada, Herre Jelger; Marelli, Giovanni; Fuhrmans, Marc
- PLoS ONE, Vol. 7, Issue 6
A sub-nanometre view of how membrane curvature and composition modulate lipid packing and protein recruitment
journal, September 2014
- Vanni, Stefano; Hirose, Hisaaki; Barelli, Hélène
- Nature Communications, Vol. 5, Issue 1
On the Validation of Molecular Dynamics Simulations of Saturated and cis -Monounsaturated Phosphatidylcholine Lipid Bilayers: A Comparison with Experiment
journal, November 2009
- Poger, David; Mark, Alan E.
- Journal of Chemical Theory and Computation, Vol. 6, Issue 1
Water Replacement Hypothesis in Atomic Detail—Factors Determining the Structure of Dehydrated Bilayer Stacks
journal, July 2009
- Golovina, Elena A.; Golovin, Andrey V.; Hoekstra, Folkert A.
- Biophysical Journal, Vol. 97, Issue 2
Polyunsaturated phospholipids facilitate membrane deformation and fission by endocytic proteins
journal, August 2014
- Pinot, Mathieu; Vanni, Stefano; Pagnotta, Sophie
- Science, Vol. 345, Issue 6197
The Fusion of Membranes and Vesicles: Pathway and Energy Barriers from Dissipative Particle Dynamics
journal, April 2009
- Grafmüller, Andrea; Shillcock, Julian; Lipowsky, Reinhard
- Biophysical Journal, Vol. 96, Issue 7
THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
journal, October 1992
- Kumar, Shankar; Rosenberg, John M.; Bouzida, Djamal
- Journal of Computational Chemistry, Vol. 13, Issue 8
Fast Lipid Disorientation at the Onset of Membrane Fusion Revealed by Molecular Dynamics Simulations
journal, July 2001
- Ohta-Iino, Satoko; Pasenkiewicz-Gierula, Marta; Takaoka, Yuji
- Biophysical Journal, Vol. 81, Issue 1
Expansion of the fusion stalk and its implication for biological membrane fusion
journal, July 2014
- Risselada, H. J.; Bubnis, G.; Grubmuller, H.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 30
Molecular Simulation of Dioleoylphosphatidylcholine Lipid Bilayers at Differing Levels of Hydration
journal, December 2001
- Mashl, R. Jay; Scott, H. Larry; Subramaniam, Shankar
- Biophysical Journal, Vol. 81, Issue 6
Direct measurements of forces between phosphatidylcholine and phosphatidylethanolamine bilayers in aqueous electrolyte solutions
journal, August 1985
- Marra, Johan; Israelachvili, Jacob
- Biochemistry, Vol. 24, Issue 17
A Detailed Look at Vesicle Fusion
journal, July 2006
- Smeijers, A. F.; Markvoort, A. J.; Pieterse, K.
- The Journal of Physical Chemistry B, Vol. 110, Issue 26
Energetics of stalk intermediates in membrane fusion are controlled by lipid composition
journal, May 2012
- Aeffner, S.; Reusch, T.; Weinhausen, B.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 25
Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion
journal, July 2006
- Kasson, P. M.; Kelley, N. W.; Singhal, N.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 32
The MARTINI Force Field: Coarse Grained Model for Biomolecular Simulations
journal, July 2007
- Marrink, Siewert J.; Risselada, H. Jelger; Yefimov, Serge
- The Journal of Physical Chemistry B, Vol. 111, Issue 27
Acyl-Chain Methyl Distributions of Liquid-Ordered and -Disordered Membranes
journal, March 2011
- Mihailescu, Mihaela; Vaswani, Rishi G.; Jardón-Valadez, Eduardo
- Biophysical Journal, Vol. 100, Issue 6
g_wham—A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates
journal, November 2010
- Hub, Jochen S.; de Groot, Bert L.; van der Spoel, David
- Journal of Chemical Theory and Computation, Vol. 6, Issue 12
Mechanism of Membrane Curvature Sensing by Amphipathic Helix Containing Proteins
journal, March 2011
- Cui, Haosheng; Lyman, Edward; Voth, Gregory A.
- Biophysical Journal, Vol. 100, Issue 5
Membrane Fusion and Exocytosis
journal, June 1999
- Jahn, Reinhard; Südhof, Thomas C.
- Annual Review of Biochemistry, Vol. 68, Issue 1
The molecular face of lipid rafts in model membranes
journal, November 2008
- Risselada, H. J.; Marrink, S. J.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 45
The calculation of the potential of mean force using computer simulations
journal, September 1995
- Roux, Benoît
- Computer Physics Communications, Vol. 91, Issue 1-3
Point-Like Protrusion as a Prestalk Intermediate in Membrane Fusion Pathway
journal, April 2007
- Efrat, Avishay; Chernomordik, Leonid V.; Kozlov, Michael M.
- Biophysical Journal, Vol. 92, Issue 8
Definition and testing of the GROMOS force-field versions 54A7 and 54B7
journal, April 2011
- Schmid, Nathan; Eichenberger, Andreas P.; Choutko, Alexandra
- European Biophysics Journal, Vol. 40, Issue 7
Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models
journal, January 2014
- Wassenaar, Tsjerk A.; Pluhackova, Kristyna; Böckmann, Rainer A.
- Journal of Chemical Theory and Computation, Vol. 10, Issue 2
Stalk Model of Membrane Fusion: Solution of Energy Crisis
journal, February 2002
- Kozlovsky, Yonathan; Kozlov, Michael M.
- Biophysical Journal, Vol. 82, Issue 2
Effect of tension and curvature on the chemical potential of lipids in lipid aggregates
journal, January 2013
- Grafmüller, Andrea; Lipowsky, Reinhard; Knecht, Volker
- Phys. Chem. Chem. Phys., Vol. 15, Issue 3
VMD: Visual molecular dynamics
journal, February 1996
- Humphrey, William; Dalke, Andrew; Schulten, Klaus
- Journal of Molecular Graphics, Vol. 14, Issue 1
Packing and Viscoelasticity of Polyunsaturated ω-3 and ω-6 Lipid Bilayers as Seen by 2 H NMR and X-ray Diffraction
journal, February 2005
- Rajamoorthi, Kannan; Petrache, Horia I.; McIntosh, Thomas J.
- Journal of the American Chemical Society, Vol. 127, Issue 5