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Title: Native mass spectrometry and ion mobility characterize the orange carotenoid protein functional domains

Authors:
 [1];  [2];  [1];  [3];  [1];  [4]
  1. Washington Univ., St. Louis, MO (United States). Dept. of Chemistry and Photosynthetic Antenna Research Center (PARC)
  2. Washington Univ., St. Louis, MO (United States). Photosynthetic Antenna Research Center (PARC) and Dept. of Biology
  3. Washington Univ., St. Louis, MO (United States). Dept. of Biology
  4. Washington Univ., St. Louis, MO (United States). Dept. of Chemistry, Dept. of Biology and Photosynthetic Antenna Research Center (PARC)
Publication Date:
Research Org.:
Washington Univ., St. Louis, MO (United States); Energy Frontier Research Centers (EFRC) (United States). Photosynthetic Antenna Research Center (PARC)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Inst. of General Medical Science (NIGMS)
OSTI Identifier:
1361084
Alternate Identifier(s):
OSTI ID: 1346086; OSTI ID: 1434587
Grant/Contract Number:  
FG02-07ER15902; SC0001035; 8 P41 GM103422
Resource Type:
Published Article
Journal Name:
Biochimica et Biophysica Acta - Bioenergetics
Additional Journal Information:
Journal Name: Biochimica et Biophysica Acta - Bioenergetics Journal Volume: 1857 Journal Issue: 6; Journal ID: ISSN 0005-2728
Publisher:
Elsevier
Country of Publication:
Netherlands
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Orange carotenoid protein; native mass spectrometry; ion mobility; collision activation

Citation Formats

Zhang, Hao, Liu, Haijun, Lu, Yue, Wolf, Nathan R., Gross, Michael L., and Blankenship, Robert E. Native mass spectrometry and ion mobility characterize the orange carotenoid protein functional domains. Netherlands: N. p., 2016. Web. doi:10.1016/j.bbabio.2016.02.015.
Zhang, Hao, Liu, Haijun, Lu, Yue, Wolf, Nathan R., Gross, Michael L., & Blankenship, Robert E. Native mass spectrometry and ion mobility characterize the orange carotenoid protein functional domains. Netherlands. https://doi.org/10.1016/j.bbabio.2016.02.015
Zhang, Hao, Liu, Haijun, Lu, Yue, Wolf, Nathan R., Gross, Michael L., and Blankenship, Robert E. Wed . "Native mass spectrometry and ion mobility characterize the orange carotenoid protein functional domains". Netherlands. https://doi.org/10.1016/j.bbabio.2016.02.015.
@article{osti_1361084,
title = {Native mass spectrometry and ion mobility characterize the orange carotenoid protein functional domains},
author = {Zhang, Hao and Liu, Haijun and Lu, Yue and Wolf, Nathan R. and Gross, Michael L. and Blankenship, Robert E.},
abstractNote = {},
doi = {10.1016/j.bbabio.2016.02.015},
journal = {Biochimica et Biophysica Acta - Bioenergetics},
number = 6,
volume = 1857,
place = {Netherlands},
year = {Wed Jun 01 00:00:00 EDT 2016},
month = {Wed Jun 01 00:00:00 EDT 2016}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1016/j.bbabio.2016.02.015

Citation Metrics:
Cited by: 16 works
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Works referenced in this record:

Phycobilisome-reaction centre interaction in cyanobacteria
journal, October 2007


The orange carotenoid protein in photoprotection of photosystem II in cyanobacteria
journal, January 2012

  • Kirilovsky, Diana; Kerfeld, Cheryl A.
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1817, Issue 1
  • DOI: 10.1016/j.bbabio.2011.04.013

Structural organization of an intact phycobilisome and its association with photosystem II
journal, May 2015

  • Chang, Leifu; Liu, Xianwei; Li, Yanbing
  • Cell Research, Vol. 25, Issue 6
  • DOI: 10.1038/cr.2015.59

Excited State Properties of 3′-Hydroxyechinenone in Solvents and in the Orange Carotenoid Protein from Synechocystis sp. PCC 6803
journal, May 2014

  • Niedzwiedzki, Dariusz M.; Liu, Haijun; Blankenship, Robert E.
  • The Journal of Physical Chemistry B, Vol. 118, Issue 23
  • DOI: 10.1021/jp5041794

Carotenoid-induced quenching of the phycobilisome fluorescence in photosystem II-deficient mutant of Synechocystis sp.
journal, August 2004


Advances in ion mobility-mass spectrometry instrumentation and techniques for characterizing structural heterogeneity
journal, January 2015

  • Maurer, Megan M.; Donohoe, Gregory C.; Valentine, Stephen J.
  • The Analyst, Vol. 140, Issue 20
  • DOI: 10.1039/C5AN00922G

Recent developments in electrospray ionisation mass spectrometry: noncovalently bound protein complexes
journal, January 2005

  • Ashcroft, Alison E.
  • Natural Product Reports, Vol. 22, Issue 4
  • DOI: 10.1039/b417724j

Native ion mobility-mass spectrometry and related methods in structural biology
journal, June 2013

  • Konijnenberg, A.; Butterer, A.; Sobott, F.
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1834, Issue 6
  • DOI: 10.1016/j.bbapap.2012.11.013

Ion mobility–mass spectrometry analysis of large protein complexes
journal, June 2008

  • Ruotolo, Brandon T.; Benesch, Justin L. P.; Sandercock, Alan M.
  • Nature Protocols, Vol. 3, Issue 7
  • DOI: 10.1038/nprot.2008.78

The Signaling State of Orange Carotenoid Protein
journal, August 2015

  • Maksimov, Eugene G.; Shirshin, Evgeny A.; Sluchanko, Nikolai N.
  • Biophysical Journal, Vol. 109, Issue 3
  • DOI: 10.1016/j.bpj.2015.06.052

Collision Cross Sections for Structural Proteomics
journal, April 2015


Mass spectrometry: come of age for structural and dynamical biology
journal, October 2011

  • Benesch, Justin LP; Ruotolo, Brandon T.
  • Current Opinion in Structural Biology, Vol. 21, Issue 5
  • DOI: 10.1016/j.sbi.2011.08.002

The Cyanobacterial Photoactive Orange Carotenoid Protein Is an Excellent Singlet Oxygen Quencher
journal, April 2014

  • Sedoud, Arezki; López-Igual, Rocío; ur Rehman, Ateeq
  • The Plant Cell, Vol. 26, Issue 4
  • DOI: 10.1105/tpc.114.123802

Ion mobility–mass spectrometry for structural proteomics
journal, February 2012

  • Zhong, Yueyang; Hyung, Suk-Joon; Ruotolo, Brandon T.
  • Expert Review of Proteomics, Vol. 9, Issue 1
  • DOI: 10.1586/epr.11.75

Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination
journal, October 2010

  • Gheyi, Tarun; Rodgers, Logan; Romero, Richard
  • Journal of the American Society for Mass Spectrometry, Vol. 21, Issue 10
  • DOI: 10.1016/j.jasms.2010.06.015

T-wave Ion Mobility-mass Spectrometry: Basic Experimental Procedures for Protein Complex Analysis
journal, January 2010

  • Michaelevski, Izhak; Kirshenbaum, Noam; Sharon, Michal
  • Journal of Visualized Experiments, Issue 41
  • DOI: 10.3791/1985

Energy biotechnology with cyanobacteria
journal, June 2009

  • Angermayr, S. Andreas; Hellingwerf, Klaas J.; Lindblad, Peter
  • Current Opinion in Biotechnology, Vol. 20, Issue 3, p. 257-263
  • DOI: 10.1016/j.copbio.2009.05.011

Gas-Phase Unfolding and Disassembly Reveals Stability Differences in Ligand-Bound Multiprotein Complexes
journal, April 2009


Local and global structural drivers for the photoactivation of the orange carotenoid protein
journal, September 2015

  • Gupta, Sayan; Guttman, Miklos; Leverenz, Ryan L.
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 41
  • DOI: 10.1073/pnas.1512240112

Cyanobacterial Light-Harvesting Phycobilisomes Uncouple From Photosystem I During Dark-To-Light Transitions
journal, September 2015

  • Chukhutsina, Volha; Bersanini, Luca; Aro, Eva-Mari
  • Scientific Reports, Vol. 5, Issue 1
  • DOI: 10.1038/srep14193

Post-translational Modifications of Integral Membrane Proteins Resolved by Top-down Fourier Transform Mass Spectrometry with Collisionally Activated Dissociation
journal, January 2010

  • Ryan, Christopher M.; Souda, Puneet; Bassilian, Sara
  • Molecular & Cellular Proteomics, Vol. 9, Issue 5
  • DOI: 10.1074/mcp.M900516-MCP200

Cryo-imaging of photosystems and phycobilisomes in Anabaena sp. PCC 7120 cells
journal, November 2015


Developing limited proteolysis and mass spectrometry for the characterization of ribosome topography
journal, July 2007

  • Suh, Moo-Jin; Pourshahian, Soheil; Limbach, Patrick A.
  • Journal of the American Society for Mass Spectrometry, Vol. 18, Issue 7
  • DOI: 10.1016/j.jasms.2007.03.028

Quenching of phycobilisome fluorescence by orange carotenoid protein
journal, August 2011

  • Stadnichuk, I. N.; Yanyushin, M. F.; Zharmukhamedov, S. K.
  • Doklady Biochemistry and Biophysics, Vol. 439, Issue 1
  • DOI: 10.1134/S1607672911040053

Aspects of native proteins are retained in vacuum
journal, October 2006


Mass spectrometric methods to analyze the structural organization of macromolecular complexes
journal, November 2015


Peeling back the layers of complexity
journal, October 2011


Mass ign: An Assignment Strategy for Maximizing Information from the Mass Spectra of Heterogeneous Protein Assemblies
journal, March 2012

  • Morgner, Nina; Robinson, Carol V.
  • Analytical Chemistry, Vol. 84, Issue 6
  • DOI: 10.1021/ac300056a

Ion mobility mass spectrometry of proteins and proteinassemblies
journal, January 2010

  • Uetrecht, Charlotte; Rose, Rebecca J.; van Duijn, Esther
  • Chem. Soc. Rev., Vol. 39, Issue 5
  • DOI: 10.1039/B914002F

Native mass spectrometry of photosynthetic pigment-protein complexes
journal, January 2013


Ion Mobility-Mass Spectrometry Differentiates Protein Quaternary Structures Formed in Solution and in Electrospray Droplets
journal, June 2015


Insights into the Structural Changes Occurring upon Photoconversion in the Orange Carotenoid Protein from Broadband Two-Dimensional Electronic Spectroscopy
journal, May 2014

  • De Re, Eleonora; Schlau-Cohen, Gabriela S.; Leverenz, Ryan L.
  • The Journal of Physical Chemistry B, Vol. 118, Issue 20
  • DOI: 10.1021/jp502120h

Cyanobacterial Emergence at 2.8 Gya and Greenhouse Feedbacks
journal, February 2008

  • Schwartzman, David; Caldeira, Ken; Pavlov, Alex
  • Astrobiology, Vol. 8, Issue 1
  • DOI: 10.1089/ast.2006.0074

Domain elucidation by mass spectrometry
journal, September 1996


Synthetic biology of cyanobacteria: unique challenges and opportunities
journal, January 2013


Post-expression strategies for structural investigations of membrane proteins
journal, June 2015


A 12 A carotenoid translocation in a photoswitch associated with cyanobacterial photoprotection
journal, June 2015


Controlling release, unfolding and dissociation of membrane protein complexes in the gas phase through collisional cooling
journal, January 2015

  • Landreh, Michael; Liko, Idlir; Uzdavinys, Povilas
  • Chemical Communications, Vol. 51, Issue 85
  • DOI: 10.1039/C5CC07045G

A comparison of the folding characteristics of free and ribosome‐tethered polypeptide chains using limited proteolysis and mass spectrometry
journal, June 2015

  • Rajabi, Khadijeh; Reuther, Julia; Deuerling, Elke
  • Protein Science, Vol. 24, Issue 8
  • DOI: 10.1002/pro.2702

Protein Complexes in the Gas Phase:  Technology for Structural Genomics and Proteomics
journal, August 2007

  • Benesch, Justin L. P.; Ruotolo, Brandon T.; Simmons, Douglas A.
  • Chemical Reviews, Vol. 107, Issue 8
  • DOI: 10.1021/cr068289b

A photoactive carotenoid protein acting as light intensity sensor
journal, August 2008

  • Wilson, A.; Punginelli, C.; Gall, A.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 33
  • DOI: 10.1073/pnas.0804636105

Excited States of the Inactive and Active Forms of the Orange Carotenoid Protein
journal, July 2013

  • Berera, Rudi; Gwizdala, Michal; van Stokkum, Ivo H. M.
  • The Journal of Physical Chemistry B, Vol. 117, Issue 31
  • DOI: 10.1021/jp307420p

Structural Determinants Underlying Photoprotection in the Photoactive Orange Carotenoid Protein of Cyanobacteria
journal, April 2010

  • Wilson, Adjele; Kinney, James N.; Zwart, Petrus H.
  • Journal of Biological Chemistry, Vol. 285, Issue 24
  • DOI: 10.1074/jbc.M110.115709

Native protein mass spectrometry: from intact oligomers to functional machineries
journal, October 2004


Native Electrospray Mass Spectrometry Reveals the Nature and Stoichiometry of Pigments in the FMO Photosynthetic Antenna Protein
journal, May 2011

  • Wen, Jianzhong; Zhang, Hao; Gross, Michael L.
  • Biochemistry, Vol. 50, Issue 17
  • DOI: 10.1021/bi200239k

Mass spectrometry footprinting reveals the structural rearrangements of cyanobacterial orange carotenoid protein upon light activation
journal, December 2014

  • Liu, Haijun; Zhang, Hao; King, Jeremy D.
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1837, Issue 12
  • DOI: 10.1016/j.bbabio.2014.09.004

Top-down mass spectrometry: Recent developments, applications and perspectives
journal, January 2011

  • Cui, Weidong; Rohrs, Henry W.; Gross, Michael L.
  • The Analyst, Vol. 136, Issue 19
  • DOI: 10.1039/c1an15286f

The structural aspects of limited proteolysis of native proteins
journal, February 1998

  • Hubbard, Simon J.
  • Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, Vol. 1382, Issue 2
  • DOI: 10.1016/S0167-4838(97)00175-1

Collision Induced Unfolding of Intact Antibodies: Rapid Characterization of Disulfide Bonding Patterns, Glycosylation, and Structures
journal, October 2015


CIUSuite: A Quantitative Analysis Package for Collision Induced Unfolding Measurements of Gas-Phase Protein Ions
journal, October 2015


Molecular Mechanism of Photoactivation and Structural Location of the Cyanobacterial Orange Carotenoid Protein
journal, December 2013

  • Zhang, Hao; Liu, Haijun; Niedzwiedzki, Dariusz M.
  • Biochemistry, Vol. 53, Issue 1
  • DOI: 10.1021/bi401539w

Regulation of Orange Carotenoid Protein Activity in Cyanobacterial Photoprotection
journal, July 2015

  • Thurotte, Adrien; Lopez-Igual, Rocio; Wilson, Adjélé
  • Plant Physiology, Vol. 169, Issue 1
  • DOI: 10.1104/pp.15.00843