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Title: Molecular modeling of the elastomeric properties of repeating units and building blocks of resilin, a disordered elastic protein

Authors:
; ; ; ;
Publication Date:
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1357071
Grant/Contract Number:  
FG02-07ER64449
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
Journal of the Mechanical Behavior of Biomedical Materials
Additional Journal Information:
Journal Name: Journal of the Mechanical Behavior of Biomedical Materials Journal Volume: 61 Journal Issue: C; Journal ID: ISSN 1751-6161
Publisher:
Elsevier
Country of Publication:
Netherlands
Language:
English

Citation Formats

Khandaker, Md Shahriar K., Dudek, Daniel M., Beers, Eric P., Dillard, David A., and Bevan, David R. Molecular modeling of the elastomeric properties of repeating units and building blocks of resilin, a disordered elastic protein. Netherlands: N. p., 2016. Web. doi:10.1016/j.jmbbm.2016.01.017.
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Khandaker, Md Shahriar K., Dudek, Daniel M., Beers, Eric P., Dillard, David A., & Bevan, David R. Molecular modeling of the elastomeric properties of repeating units and building blocks of resilin, a disordered elastic protein. Netherlands. https://doi.org/10.1016/j.jmbbm.2016.01.017
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Khandaker, Md Shahriar K., Dudek, Daniel M., Beers, Eric P., Dillard, David A., and Bevan, David R. Mon . "Molecular modeling of the elastomeric properties of repeating units and building blocks of resilin, a disordered elastic protein". Netherlands. https://doi.org/10.1016/j.jmbbm.2016.01.017.
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@article{osti_1357071,
title = {Molecular modeling of the elastomeric properties of repeating units and building blocks of resilin, a disordered elastic protein},
author = {Khandaker, Md Shahriar K. and Dudek, Daniel M. and Beers, Eric P. and Dillard, David A. and Bevan, David R.},
abstractNote = {},
doi = {10.1016/j.jmbbm.2016.01.017},
journal = {Journal of the Mechanical Behavior of Biomedical Materials},
number = C,
volume = 61,
place = {Netherlands},
year = {Mon Aug 01 00:00:00 EDT 2016},
month = {Mon Aug 01 00:00:00 EDT 2016}
}
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Journal Article:
Free Publicly Available Full Text
Accepted Manuscript (Publisher)
Publisher's Version of Record
https://doi.org/10.1016/j.jmbbm.2016.01.017
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Works referenced in this record:

NAMD2: Greater Scalability for Parallel Molecular Dynamics
journal, May 1999

  • Kalé, Laxmikant; Skeel, Robert; Bhandarkar, Milind
  • Journal of Computational Physics, Vol. 151, Issue 1
  • DOI: 10.1006/jcph.1999.6201

Assigning secondary structure from protein coordinate data
journal, May 1999

Biology and physics of locust flight. V. Strength and elasticity of locust cuticle
journal, October 1962

  • Jensen, Martin; Weis-Fogh, T.
  • Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, Vol. 245, Issue 721, p. 137-169
  • DOI: 10.1098/rstb.1962.0008

Principal component and clustering analysis on molecular dynamics data of the ribosomal L11·23S subdomain
journal, September 2012

The cross-links in resilin identified as dityrosine and trityrosine
journal, October 1964

Transduction of mechanical energy into sound energy in the cicada cyclochila australasiae
journal, July 1999

  • Bennet-Clark, H. C.; Daws, A. G.
  • Journal of Experimental Biology, Vol. 202, Issue 13
  • DOI: 10.1242/jeb.202.13.1803

Mechanical recruitment of N- and C-crosslinks in collagen type I
journal, February 2014

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
journal, February 2008

  • Hess, Berk; Kutzner, Carsten; van der Spoel, David
  • Journal of Chemical Theory and Computation, Vol. 4, Issue 3
  • DOI: 10.1021/ct700301q

Dissecting Entropic Coiling and Poor Solvent Effects in Protein Collapse
journal, August 2008

  • Gräter, Frauke; Heider, Pascal; Zangi, Ronen
  • Journal of the American Chemical Society, Vol. 130, Issue 35
  • DOI: 10.1021/ja802341q

Elastic joints in dermapteran hind wings: materials and wing folding
journal, April 2000

Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides †
journal, July 2001

  • Kaminski, George A.; Friesner, Richard A.; Tirado-Rives, Julian
  • The Journal of Physical Chemistry B, Vol. 105, Issue 28
  • DOI: 10.1021/jp003919d

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
journal, March 1977

  • Ryckaert, Jean-Paul; Ciccotti, Giovanni; Berendsen, Herman J. C.
  • Journal of Computational Physics, Vol. 23, Issue 3
  • DOI: 10.1016/0021-9991(77)90098-5

GROMACS: Fast, flexible, and free
journal, January 2005

  • Van Der Spoel, David; Lindahl, Erik; Hess, Berk
  • Journal of Computational Chemistry, Vol. 26, Issue 16
  • DOI: 10.1002/jcc.20291

Design and facile production of recombinant resilin-like polypeptides: gene construction and a rapid protein purification method
journal, January 2007

  • Lyons, Russell E.; Lesieur, Emmanuelle; Kim, Misook
  • Protein Engineering, Design and Selection, Vol. 20, Issue 1
  • DOI: 10.1093/protein/gzl050

A Rubber-Like Protein in Insect Cuticle
journal, December 1960

Molecular interpretation of the elasticity of resilin, a rubber-like protein
journal, October 1961

From bouncy legs to poisoned arrows: elastic movements in invertebrates
journal, May 2011

  • Patek, S. N.; Dudek, D. M.; Rosario, M. V.
  • Journal of Experimental Biology, Vol. 214, Issue 12
  • DOI: 10.1242/jeb.038596

Comparison of simple potential functions for simulating liquid water
journal, July 1983

  • Jorgensen, William L.; Chandrasekhar, Jayaraman; Madura, Jeffry D.
  • The Journal of Chemical Physics, Vol. 79, Issue 2
  • DOI: 10.1063/1.445869

Hydrophilic elastomeric biomaterials based on resilin-like polypeptides
journal, January 2009

  • Charati, Manoj B.; Ifkovits, Jamie L.; Burdick, Jason A.
  • Soft Matter, Vol. 5, Issue 18
  • DOI: 10.1039/b910980c

All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins †
journal, April 1998

  • MacKerell, A. D.; Bashford, D.; Bellott, M.
  • The Journal of Physical Chemistry B, Vol. 102, Issue 18
  • DOI: 10.1021/jp973084f

Comparisons of Recombinant Resilin-like Proteins: Repetitive Domains Are Sufficient to Confer Resilin-like Properties
journal, October 2009

  • Lyons, Russell E.; Nairn, Kate M.; Huson, Mickey G.
  • Biomacromolecules, Vol. 10, Issue 11
  • DOI: 10.1021/bm900601h

Three-dimensional kinematics and limb kinetic energy of running cockroaches.
journal, July 1997

Identification of resilin in the leg of cockroach, Periplaneta americana: confirmation by a simple method using pH dependence of UV fluorescence
journal, January 2000

Elastomechanical properties of resilin
journal, January 2011

  • Kappiyoor, Ravi; Balasubramanian, Ganesh; Dudek, Daniel M.
  • Soft Matter, Vol. 7, Issue 22
  • DOI: 10.1039/c1sm06163a

UCSF Chimera?A visualization system for exploratory research and analysis
journal, January 2004

  • Pettersen, Eric F.; Goddard, Thomas D.; Huang, Conrad C.
  • Journal of Computational Chemistry, Vol. 25, Issue 13
  • DOI: 10.1002/jcc.20084

Resilin and chitinous cuticle form a composite structure for energy storage in jumping by froghopper insects
journal, September 2008

  • Burrows, Malcolm; Shaw, Stephen R.; Sutton, Gregory P.
  • BMC Biology, Vol. 6, Issue 1
  • DOI: 10.1186/1741-7007-6-41

The molecular basis for the inverse temperature transition of elastin11Edited by A. R. Fersht
journal, January 2001

  • Li, Bin; Alonso, Darwin O. V.; Daggett, Valerie
  • Journal of Molecular Biology, Vol. 305, Issue 3
  • DOI: 10.1006/jmbi.2000.4306

Deformation rate controls elasticity and unfolding pathway of single tropocollagen molecules
journal, April 2009

  • Gautieri, Alfonso; Buehler, Markus J.; Redaelli, Alberto
  • Journal of the Mechanical Behavior of Biomedical Materials, Vol. 2, Issue 2
  • DOI: 10.1016/j.jmbbm.2008.03.001

Stereochemistry of polypeptide chain configurations
journal, July 1963

The alphabet of intrinsic disorder: I. Act like a Pro: On the abundance and roles of proline residues in intrinsically disordered proteins
journal, January 2013

  • Theillet, Francois-Xavier; Kalmar, Lajos; Tompa, Peter
  • Intrinsically Disordered Proteins, Vol. 1, Issue 1
  • DOI: 10.4161/idp.24360

The Jump of the Flea: A Study of the Energetics and a Model of the Mechanism
journal, August 1967

  • Bennet-Clark, H. C.; Lucey, E. C. A.
  • Journal of Experimental Biology, Vol. 47, Issue 1
  • DOI: 10.1242/jeb.47.1.59

Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
journal, June 1993

  • Darden, Tom; York, Darrin; Pedersen, Lee
  • The Journal of Chemical Physics, Vol. 98, Issue 12
  • DOI: 10.1063/1.464397

Quantitative Observation of Backbone Disorder in Native Elastin
journal, February 2004

  • Pometun, Maxim S.; Chekmenev, Eduard Y.; Wittebort, Richard J.
  • Journal of Biological Chemistry, Vol. 279, Issue 9
  • DOI: 10.1074/jbc.M310948200

On residues in the disallowed region of the Ramachandran map
journal, January 2002

  • Pal, Debnath; Chakrabarti, Pinak
  • Biopolymers, Vol. 63, Issue 3
  • DOI: 10.1002/bip.10051

Expression, Cross-Linking, and Characterization of Recombinant Chitin Binding Resilin
journal, November 2009

  • Qin, Guokui; Lapidot, Shaul; Numata, Keiji
  • Biomacromolecules, Vol. 10, Issue 12
  • DOI: 10.1021/bm900735g

How Sequence Determines Elasticity of Disordered Proteins
journal, December 2010

Inverse Temperature Transition of a Biomimetic Elastin Model:  Reactive Flux Analysis of Folding/Unfolding and Its Coupling to Solvent Dielectric Relaxation †
journal, March 2006

  • Baer, Marcel; Schreiner, Eduard; Kohlmeyer, Axel
  • The Journal of Physical Chemistry B, Vol. 110, Issue 8
  • DOI: 10.1021/jp054805a

Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
journal, December 1983

Mechanism of resilin elasticity
journal, January 2012

  • Qin, Guokui; Hu, Xiao; Cebe, Peggy
  • Nature Communications, Vol. 3, Issue 1
  • DOI: 10.1038/ncomms2004

Structural Disorder in Silk Proteins Reveals the Emergence of Elastomericity
journal, December 2007

  • Dicko, Cedric; Porter, David; Bond, Jason
  • Biomacromolecules, Vol. 9, Issue 1
  • DOI: 10.1021/bm701069y

Synthesis and properties of crosslinked recombinant pro-resilin
journal, October 2005

  • Elvin, Christopher M.; Carr, Andrew G.; Huson, Mickey G.
  • Nature, Vol. 437, Issue 7061
  • DOI: 10.1038/nature04085

Steered molecular dynamics investigations of protein function
journal, February 2001

  • Isralewitz, Barry; Baudry, Jerome; Gullingsrud, Justin
  • Journal of Molecular Graphics and Modelling, Vol. 19, Issue 1
  • DOI: 10.1016/S1093-3263(00)00133-9

Investigating by CD the molecular mechanism of elasticity of elastomeric proteins
journal, September 2008

  • Bochicchio, Brigida; Pepe, Antonietta; Tamburro, Antonio M.
  • Chirality, Vol. 20, Issue 9
  • DOI: 10.1002/chir.20541

Proline and Glycine Control Protein Self-Organization into Elastomeric or Amyloid Fibrils
journal, November 2006

Steered molecular dynamics and mechanical functions of proteins
journal, April 2001

Modifications of spider silk sequences in an attempt to control the mechanical properties of the synthetic fibers
journal, July 2007

  • Teulé, Florence; Furin, William A.; Cooper, Alyssa R.
  • Journal of Materials Science, Vol. 42, Issue 21
  • DOI: 10.1007/s10853-007-1642-6

The role of the tymbal in cicada sound production
journal, April 1995

Enhanced mechanical pathways through nature's building blocks: amino acids
journal, January 2012

  • Johnson, J. Casey; Korley, LaShanda T. J.
  • Soft Matter, Vol. 8, Issue 45
  • DOI: 10.1039/c2sm26185e

Designed biomaterials to mimic the mechanical properties of muscles
journal, May 2010

  • Lv, Shanshan; Dudek, Daniel M.; Cao, Yi
  • Nature, Vol. 465, Issue 7294
  • DOI: 10.1038/nature09024

VMD: Visual molecular dynamics
journal, February 1996

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