Search Menu
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information
Search Scholarly Publications

Title: Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm

Abstract

Thalassospirasp. strain KO164 was isolated from eastern Mediterranean seawater and sediment laboratory microcosms enriched on insoluble organosolv lignin under oxic conditions. The near-complete genome sequence presented here will facilitate analyses into this deep-ocean bacterium’s ability to degrade recalcitrant organics such as lignin.

Authors:
 [1];  [2];  [3];  [2];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [5] more »; ORCiD logo [6] « less
+ Show Author Affiliations
  1. Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA
  2. Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA
  3. Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA
  4. DOE Joint Genome Institute, Walnut Creek, California, USA
  5. Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
  6. Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA, Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA, Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA, Department of Earth and Planetary Sciences, University of Tennessee, Knoxville, Tennessee, USA
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)
OSTI Identifier:
1786572
Alternate Identifier(s):
OSTI ID: 1354677; OSTI ID: 1378986
Grant/Contract Number:  
AC05-00OR22725; AC02-05CH11231; DGE-1452154
Resource Type:
Published Article
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Name: Genome Announcements Journal Volume: 4 Journal Issue: 6; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Woo, Hannah L., O'Dell, Kaela B., Utturkar, Sagar, McBride, Kathryn R., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Brown, Steven D., and Hazen, Terry C. Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm. United States: N. p., 2016. Web. doi:10.1128/genomeA.01297-16.
Copy to clipboard
Woo, Hannah L., O'Dell, Kaela B., Utturkar, Sagar, McBride, Kathryn R., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Brown, Steven D., & Hazen, Terry C. Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm. United States. https://doi.org/10.1128/genomeA.01297-16
Copy to clipboard
Woo, Hannah L., O'Dell, Kaela B., Utturkar, Sagar, McBride, Kathryn R., Huntemann, Marcel, Clum, Alicia, Pillay, Manoj, Palaniappan, Krishnaveni, Varghese, Neha, Mikhailova, Natalia, Stamatis, Dimitrios, Reddy, T. B. K., Ngan, Chew Yee, Daum, Chris, Shapiro, Nicole, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Woyke, Tanja, Brown, Steven D., and Hazen, Terry C. Thu . "Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm". United States. https://doi.org/10.1128/genomeA.01297-16.
Copy to clipboard
@article{osti_1786572,
title = {Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm},
author = {Woo, Hannah L. and O'Dell, Kaela B. and Utturkar, Sagar and McBride, Kathryn R. and Huntemann, Marcel and Clum, Alicia and Pillay, Manoj and Palaniappan, Krishnaveni and Varghese, Neha and Mikhailova, Natalia and Stamatis, Dimitrios and Reddy, T. B. K. and Ngan, Chew Yee and Daum, Chris and Shapiro, Nicole and Markowitz, Victor and Ivanova, Natalia and Kyrpides, Nikos and Woyke, Tanja and Brown, Steven D. and Hazen, Terry C.},
abstractNote = {Thalassospirasp. strain KO164 was isolated from eastern Mediterranean seawater and sediment laboratory microcosms enriched on insoluble organosolv lignin under oxic conditions. The near-complete genome sequence presented here will facilitate analyses into this deep-ocean bacterium’s ability to degrade recalcitrant organics such as lignin.},
doi = {10.1128/genomeA.01297-16},
journal = {Genome Announcements},
number = 6,
volume = 4,
place = {United States},
year = {Thu Dec 29 00:00:00 EST 2016},
month = {Thu Dec 29 00:00:00 EST 2016}
}
Copy to clipboard
Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1128/genomeA.01297-16
Copyright Statement
Other availability
Search WorldCat Search WorldCat to find libraries that may hold this journal
Save / Share:
Export Metadata
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.

Works referenced in this record:

Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies
journal, April 2015

  • Utturkar, Sagar M.; Klingeman, Dawn M.; Bruno-Barcena, José M.
  • Scientific Data, Vol. 2, Issue 1
  • DOI: 10.1038/sdata.2015.14

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
journal, May 2013

  • Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
  • Nature Methods, Vol. 10, Issue 6
  • DOI: 10.1038/nmeth.2474

Near-Complete Genome Sequence of Clostridium paradoxum Strain JW-YL-7
journal, May 2016

  • Lancaster, W. Andrew; Utturkar, Sagar M.; Poole, Farris L.
  • Genome Announcements, Vol. 4, Issue 3
  • DOI: 10.1128/genomeA.00229-16

Draft Genome Sequence of the Thermoalkaliphilic Caldalkalibacillus thermarum Strain TA2.A1
journal, June 2011

  • Kalamorz, F.; Keis, S.; McMillan, D. G. G.
  • Journal of Bacteriology, Vol. 193, Issue 16
  • DOI: 10.1128/JB.05035-11

What happens to terrestrial organic matter in the ocean?
journal, November 1997

The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth
journal, March 2015

Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil
journal, May 2014

Thalassospira permensis sp. nov., a new terrestrial halotolerant bacterium isolated from a naphthalene-utilizing microbial consortium
journal, October 2011

Genome Sequence of Thalassospira xiamenensis Type Strain M-5
journal, December 2012

Enzymatic "Combustion": The Microbial Degradation of Lignin
journal, October 1987

    Sort by:
    [ × clear filter / sort ]

    Similar Records in DOE PAGES and OSTI.GOV collections: