Radiation damage within nucleoprotein complexes studied by macromolecular X-ray crystallography
- Authors:
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1352289
- Grant/Contract Number:
- FC02–04ER1553
- Resource Type:
- Published Article
- Journal Name:
- Radiation Physics and Chemistry
- Additional Journal Information:
- Journal Name: Radiation Physics and Chemistry Journal Volume: 128 Journal Issue: C; Journal ID: ISSN 0969-806X
- Publisher:
- Elsevier
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
Bury, Charles S., Carmichael, Ian, McGeehan, John E., and Garman, Elspeth F. Radiation damage within nucleoprotein complexes studied by macromolecular X-ray crystallography. United Kingdom: N. p., 2016.
Web. doi:10.1016/j.radphyschem.2016.05.023.
Bury, Charles S., Carmichael, Ian, McGeehan, John E., & Garman, Elspeth F. Radiation damage within nucleoprotein complexes studied by macromolecular X-ray crystallography. United Kingdom. https://doi.org/10.1016/j.radphyschem.2016.05.023
Bury, Charles S., Carmichael, Ian, McGeehan, John E., and Garman, Elspeth F. Tue .
"Radiation damage within nucleoprotein complexes studied by macromolecular X-ray crystallography". United Kingdom. https://doi.org/10.1016/j.radphyschem.2016.05.023.
@article{osti_1352289,
title = {Radiation damage within nucleoprotein complexes studied by macromolecular X-ray crystallography},
author = {Bury, Charles S. and Carmichael, Ian and McGeehan, John E. and Garman, Elspeth F.},
abstractNote = {},
doi = {10.1016/j.radphyschem.2016.05.023},
journal = {Radiation Physics and Chemistry},
number = C,
volume = 128,
place = {United Kingdom},
year = {Tue Nov 01 00:00:00 EDT 2016},
month = {Tue Nov 01 00:00:00 EDT 2016}
}
Free Publicly Available Full Text
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https://doi.org/10.1016/j.radphyschem.2016.05.023
https://doi.org/10.1016/j.radphyschem.2016.05.023
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Cited by: 2 works
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Works referenced in this record:
An electron spin resonance study of .gamma.-irradiated frozen aqueous solutions containing dipeptides. Mechanisms of radical reaction
journal, November 1979
- Sevilla, Michael D.; D'Arcy, James B.; Morehouse, Kim M.
- The Journal of Physical Chemistry, Vol. 83, Issue 22
Room-temperature macromolecular serial crystallography using synchrotron radiation
journal, May 2014
- Stellato, Francesco; Oberthür, Dominik; Liang, Mengning
- IUCrJ, Vol. 1, Issue 4, p. 204-212
Investigating DNA Radiation Damage Using X-Ray Absorption Spectroscopy
journal, March 2016
- Czapla-Masztafiak, Joanna; Szlachetko, Jakub; Milne, Christopher J.
- Biophysical Journal, Vol. 110, Issue 6
The interaction of a protein–DNA surface complex with low-energy electrons
journal, February 2008
- Solomun, T.; Skalický, T.
- Chemical Physics Letters, Vol. 453, Issue 1-3
Exploiting fast detectors to enter a new dimension in room-temperature crystallography
journal, April 2014
- Owen, Robin L.; Paterson, Neil; Axford, Danny
- Acta Crystallographica Section D Biological Crystallography, Vol. 70, Issue 5
Effective scavenging at cryotemperatures: further increasing the dose tolerance of protein crystals
journal, April 2011
- De la Mora, Eugenio; Carmichael, Ian; Garman, Elspeth F.
- Journal of Synchrotron Radiation, Vol. 18, Issue 3
Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray ‘footprinting’
journal, July 1997
- Chance, Mark R.; Sclavi, Bianca; Woodson, Sarah A.
- Structure, Vol. 5, Issue 7
Radiation damage in protein crystals is reduced with a micron-sized X-ray beam
journal, March 2011
- Sanishvili, R.; Yoder, D. W.; Pothineni, S. B.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 15
Outrunning free radicals in room-temperature macromolecular crystallography
journal, June 2012
- Owen, Robin L.; Axford, Danny; Nettleship, Joanne E.
- Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 7
Measurement of inelastic cross sections for low-energy electron scattering from DNA bases
journal, May 2011
- Michaud, Marc; Bazin, Marc; Sanche, Le´on
- International Journal of Radiation Biology, Vol. 88, Issue 1-2
Predicting the X-ray lifetime of protein crystals
journal, December 2013
- Zeldin, O. B.; Brockhauser, S.; Bremridge, J.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 51
Radiation damage to nucleoprotein complexes in macromolecular crystallography
journal, January 2015
- Bury, Charles; Garman, Elspeth F.; Ginn, Helen Mary
- Journal of Synchrotron Radiation, Vol. 22, Issue 2
Alanine-scanning mutagenesis of Bacillus subtilis trp RNA-binding attenuation protein (TRAP) reveals residues involved in tryptophan binding and RNA binding
journal, August 1997
- Yang, Min; Chen, Xiao-ping; Militello, Kevin
- Journal of Molecular Biology, Vol. 270, Issue 5
Structure of the restriction–modification controller protein C. Esp 1396I
journal, August 2009
- Ball, N.; Streeter, S. D.; Kneale, G. G.
- Acta Crystallographica Section D Biological Crystallography, Vol. 65, Issue 9
Radiation damage to DNA–protein specific complexes: estrogen response element–estrogen receptor complex
journal, December 2006
- Štísová, Viktorie; Goffinont, Stephane; Spotheim-Maurizot, Melanie
- Radiation Protection Dosimetry, Vol. 122, Issue 1-4
How Do Low-Energy (0.1−2 eV) Electrons Cause DNA-Strand Breaks?
journal, October 2006
- Simons, Jack
- Accounts of Chemical Research, Vol. 39, Issue 10
Resonant Formation of DNA Strand Breaks by Low-Energy (3 to 20 eV) Electrons
journal, March 2000
- Boudaïffa, B.
- Science, Vol. 287, Issue 5458
Radiation Damage to DNA: The Indirect Effect of Low-Energy Electrons
journal, February 2013
- Alizadeh, Elahe; Sanz, Ana G.; García, Gustavo
- The Journal of Physical Chemistry Letters, Vol. 4, Issue 5
Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA
journal, September 1999
- Antson, Alfred A.; Dodson, Eleanor J.; Dodson, Guy
- Nature, Vol. 401, Issue 6750
Radiation Disrupts Protein–DNA Complexes through Damage to the Protein. The lac Repressor–Operator System
journal, July 2001
- Eon, Séverine; Culard, Françoise; Sy, Denise
- Radiation Research, Vol. 156, Issue 1
Specific chemical and structural damage to proteins produced by synchrotron radiation
journal, January 2000
- Weik, M.; Ravelli, R. B. G.; Kryger, G.
- Proceedings of the National Academy of Sciences, Vol. 97, Issue 2
Cleavage of thymine N3–H bonds by low-energy electrons attached to base π∗ orbitals
journal, October 2006
- Théodore, Magali; Sobczyk, Monika; Simons, Jack
- Chemical Physics, Vol. 329, Issue 1-3
Structure and mobility of electron gain and loss centres in proteins
journal, December 1987
- Jones, George D. D.; Lea, Jeremy S.; Symons, Martyn C. R.
- Nature, Vol. 330, Issue 6150
Architecture of the Photosynthetic Oxygen-Evolving Center
journal, March 2004
- Ferreira, K. N.
- Science, Vol. 303, Issue 5665
X-ray radiation-induced damage in DNA monitored by online Raman
journal, December 2006
- McGeehan, John E.; Carpentier, Philippe; Royant, Antoine
- Journal of Synchrotron Radiation, Vol. 14, Issue 1
Low-energy-electron interactions with DNA: approaching cellular conditions with atmospheric experiments
journal, April 2014
- Alizadeh, Elahe; Sanche, Léon
- The European Physical Journal D, Vol. 68, Issue 4
RNA protects a nucleoprotein complex against radiation damage
journal, April 2016
- Bury, Charles S.; McGeehan, John E.; Antson, Alfred A.
- Acta Crystallographica Section D Structural Biology, Vol. 72, Issue 5
Observation of Decreased Radiation Damage at Higher Dose Rates in Room Temperature Protein Crystallography
journal, December 2007
- Southworth-Davies, Robert J.; Medina, Melissa A.; Carmichael, Ian
- Structure, Vol. 15, Issue 12
To scavenge or not to scavenge, that is STILL the question
journal, December 2012
- Allan, Elizabeth G.; Kander, Melissa C.; Carmichael, Ian
- Journal of Synchrotron Radiation, Vol. 20, Issue 1
The Interaction of RNA with TRAP: The Role of Triplet Repeats and Separating Spacer Nucleotides
journal, April 2004
- Hopcroft, Nicholas H.; Manfredo, Amanda; Wendt, Alice L.
- Journal of Molecular Biology, Vol. 338, Issue 1
Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome
journal, April 2009
- Voorhees, Rebecca M.; Weixlbaumer, Albert; Loakes, David
- Nature Structural & Molecular Biology, Vol. 16, Issue 5
Radiation damage in macromolecular crystallography: what is it and why should we care?
journal, March 2010
- Garman, Elspeth F.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
Identifying and quantifying radiation damage at the atomic level
journal, February 2015
- Gerstel, Markus; Deane, Charlotte M.; Garman, Elspeth F.
- Journal of Synchrotron Radiation, Vol. 22, Issue 2
Electron Movement Through Proteins and DNA
journal, January 1997
- Symons, Martyn C. R.
- Free Radical Biology and Medicine, Vol. 22, Issue 7
Damage to Model DNA Fragments by 0.25−1.0 eV Electrons Attached to a Thymine π* Orbital
journal, May 2004
- Berdys, Joanna; Skurski, Piotr; Simons, Jack
- The Journal of Physical Chemistry B, Vol. 108, Issue 18
The mechanism of RNA binding to TRAP: Initiation and cooperative interactions
journal, January 2001
- Elliott, Matthew B.; Gottlieb, Philip A.; Gollnick, Paul
- RNA, Vol. 7, Issue 1
Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies
journal, November 2013
- Sutton, Kristin A.; Black, Paul J.; Mercer, Kermit R.
- Acta Crystallographica Section D Biological Crystallography, Vol. 69, Issue 12
Specificity of TRAP–RNA interactions: crystal structures of two complexes with different RNA sequences
journal, March 2002
- Hopcroft, Nicholas H.; Wendt, Alice L.; Gollnick, Paul
- Acta Crystallographica Section D Biological Crystallography, Vol. 58, Issue 4
Radiolysis of lac Repressor by γ-Rays and Heavy Ions: A Two-Hit Model for Protein Inactivation
journal, May 2002
- Charlier, Michel; Eon, Séverine; Sèche, Édouard
- Biophysical Journal, Vol. 82, Issue 5
X-ray damage to the Mn4Ca complex in single crystals of photosystem II: A case study for metalloprotein crystallography
journal, August 2005
- Yano, J.; Kern, J.; Irrgang, K. -D.
- Proceedings of the National Academy of Sciences, Vol. 102, Issue 34
Radiation damage in macromolecular cryocrystallography
journal, October 2006
- Ravelli, R.; Garman, E.
- Current Opinion in Structural Biology, Vol. 16, Issue 5
Low-dose X-ray radiation induces structural alterations in proteins
journal, September 2014
- Borshchevskiy, Valentin; Round, Ekaterina; Erofeev, Ivan
- Acta Crystallographica Section D Biological Crystallography, Vol. 70, Issue 10
Protection of DNA against low-energy electrons by amino acids: a first-principles molecular dynamics study
journal, January 2014
- Gu, Bin; Smyth, Maeve; Kohanoff, Jorge
- Phys. Chem. Chem. Phys., Vol. 16, Issue 44
Mechanism for Damage to DNA by Low-Energy Electrons †
journal, August 2002
- Barrios, Robyn; Skurski, Piotr; Simons, Jack
- The Journal of Physical Chemistry B, Vol. 106, Issue 33
Radiation Affects Binding of Fpg Repair Protein to an Abasic Site Containing DNA
journal, November 2004
- Gillard, Nathalie; Begusova, Marie; Castaing, Bertrand
- Radiation Research, Vol. 162, Issue 5
Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective
journal, November 2002
- O'Neill, Peter; Stevens, David L.; Garman, Elspeth F.
- Journal of Synchrotron Radiation, Vol. 9, Issue 6
Structural changes in a cryo-cooled protein crystal owing to radiation damage
journal, March 2000
- Burmeister, Wilhelm Pascal
- Acta Crystallographica Section D Biological Crystallography, Vol. 56, Issue 3
Investigation of possible free-radical scavengers and metrics for radiation damage in protein cryocrystallography
journal, November 2002
- Murray, James; Garman, Elspeth
- Journal of Synchrotron Radiation, Vol. 9, Issue 6
Structural analysis of the genetic switch that regulates the expression of restriction-modification genes
journal, July 2008
- McGeehan, John E.; Streeter, Simon D.; Thresh, Sarah -J.
- Nucleic Acids Research, Vol. 36, Issue 14
Will reduced radiation damage occur with very small crystals?
journal, April 2005
- Nave, Colin; Hill, Mark A.
- Journal of Synchrotron Radiation, Vol. 12, Issue 3
Hydroxyl radicals and DNA base damage
journal, March 1999
- Cadet, Jean; Delatour, Thierry; Douki, Thierry
- Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, Vol. 424, Issue 1-2
Radiation damage to DNA in DNA–protein complexes
journal, June 2011
- Spotheim-Maurizot, M.; Davídková, M.
- Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, Vol. 711, Issue 1-2
Biomolecular Damage Induced by Ionizing Radiation: The Direct and Indirect Effects of Low-Energy Electrons on DNA
journal, April 2015
- Alizadeh, Elahe; Orlando, Thomas M.; Sanche, Léon
- Annual Review of Physical Chemistry, Vol. 66, Issue 1
Experimental determination of the radiation dose limit for cryocooled protein crystals
journal, March 2006
- Owen, R. L.; Rudino-Pinera, E.; Garman, E. F.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 13
Reaction mechanisms in the radiolysis of peptides, polypeptides, and proteins
journal, April 1987
- Garrison, Warren M.
- Chemical Reviews, Vol. 87, Issue 2
Probing the TRAP–RNA interaction with nucleoside analogs
journal, October 1999
- Elliott, Matthew B.; Gottlieb, Philip A.; Gollnick, Paul
- RNA, Vol. 5, Issue 10
Radiosensitivity of DNA in a specific protein-DNA complex: the lac repressor- lac operator complex
journal, January 2001
- BĚgusová, M.; Eon, S.; Sy, D.
- International Journal of Radiation Biology, Vol. 77, Issue 6
A beginner's guide to radiation damage
journal, February 2009
- Holton, James M.
- Journal of Synchrotron Radiation, Vol. 16, Issue 2
Specific radiation damage to acidic residues and its relation to their chemical and structural environment
journal, December 2006
- Fioravanti, Emanuela; Vellieux, Frédéric M. D.; Amara, Patricia
- Journal of Synchrotron Radiation, Vol. 14, Issue 1