Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome
Abstract
We report the 5,425,832 bp draft genome ofPseudomonassp. strain BDAL1, recovered from a Bakken shale hydraulic fracturing-produced water tank metagenome. Genome annotation revealed several key biofilm formation genes and osmotic stress response mechanisms necessary for survival in hydraulic fracturing-produced water.
- Authors:
-
- Univ. of Pittsburgh, PA (United States). Dept. of Civil and Environmental Engineering; National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)
- National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States); AECOM, Pittsburgh, PA (United States)
- Univ. of Pittsburgh, PA (United States). Dept. of Civil and Environmental Engineering; Univ. of Pittsburgh, PA (United States). Dept. of Computational and Systems Biology
- National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)
- Publication Date:
- Research Org.:
- National Energy Technology Lab. (NETL), Pittsburgh, PA, and Morgantown, WV (United States). In-house Research
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1351177
- Report Number(s):
- NETL-DOE-20715
Journal ID: ISSN 2169-8287
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Genome Announcements
- Additional Journal Information:
- Journal Volume: 5; Journal Issue: 11; Journal ID: ISSN 2169-8287
- Publisher:
- American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Genome, Pseudomonas, Bakken Shale, Geomicrobiology
Citation Formats
Lipus, Daniel, Ross, Daniel, Bibby, Kyle, and Gulliver, Djuna. Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome. United States: N. p., 2017.
Web. doi:10.1128/genomeA.00033-17.
Lipus, Daniel, Ross, Daniel, Bibby, Kyle, & Gulliver, Djuna. Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome. United States. https://doi.org/10.1128/genomeA.00033-17
Lipus, Daniel, Ross, Daniel, Bibby, Kyle, and Gulliver, Djuna. Thu .
"Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome". United States. https://doi.org/10.1128/genomeA.00033-17. https://www.osti.gov/servlets/purl/1351177.
@article{osti_1351177,
title = {Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome},
author = {Lipus, Daniel and Ross, Daniel and Bibby, Kyle and Gulliver, Djuna},
abstractNote = {We report the 5,425,832 bp draft genome ofPseudomonassp. strain BDAL1, recovered from a Bakken shale hydraulic fracturing-produced water tank metagenome. Genome annotation revealed several key biofilm formation genes and osmotic stress response mechanisms necessary for survival in hydraulic fracturing-produced water.},
doi = {10.1128/genomeA.00033-17},
journal = {Genome Announcements},
number = 11,
volume = 5,
place = {United States},
year = {Thu Mar 16 00:00:00 EDT 2017},
month = {Thu Mar 16 00:00:00 EDT 2017}
}
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Works referenced in this record:
Temporal Changes in Microbial Ecology and Geochemistry in Produced Water from Hydraulically Fractured Marcellus Shale Gas Wells
journal, May 2014
- Cluff, Maryam A.; Hartsock, Angela; MacRae, Jean D.
- Environmental Science & Technology, Vol. 48, Issue 11
Natural Gas Plays in the Marcellus Shale: Challenges and Potential Opportunities
journal, August 2010
- Kargbo, David M.; Wilhelm, Ron G.; Campbell, David J.
- Environmental Science & Technology, Vol. 44, Issue 15, p. 5679-5684
Water Management Challenges Associated with the Production of Shale Gas by Hydraulic Fracturing
journal, June 2011
- Gregory, K. B.; Vidic, R. D.; Dzombak, D. A.
- Elements, Vol. 7, Issue 3
A Critical Review of the Risks to Water Resources from Unconventional Shale Gas Development and Hydraulic Fracturing in the United States
journal, March 2014
- Vengosh, Avner; Jackson, Robert B.; Warner, Nathaniel
- Environmental Science & Technology, Vol. 48, Issue 15
Microbial Community Changes in Hydraulic Fracturing Fluids and Produced Water from Shale Gas Extraction
journal, October 2013
- Murali Mohan, Arvind; Hartsock, Angela; Bibby, Kyle J.
- Environmental Science & Technology, Vol. 47, Issue 22
Microbial communities in flowback water impoundments from hydraulic fracturing for recovery of shale gas
journal, August 2013
- Murali Mohan, Arvind; Hartsock, Angela; Hammack, Richard W.
- FEMS Microbiology Ecology, Vol. 86, Issue 3
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
journal, May 2012
- Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry
- Journal of Computational Biology, Vol. 19, Issue 5
VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data
journal, January 2015
- Laczny, Cedric C.; Sternal, Tomasz; Plugaru, Valentin
- Microbiome, Vol. 3, Issue 1
Accurate phylogenetic classification of variable-length DNA fragments
journal, December 2006
- McHardy, Alice Carolyn; Martín, Héctor García; Tsirigos, Aristotelis
- Nature Methods, Vol. 4, Issue 1
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015
- Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T.
- Genome Research, Vol. 25, Issue 7
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
journal, September 2008
- Meyer, F.; Paarmann, D.; D'Souza, M.
- BMC Bioinformatics, Vol. 9, Issue 1
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013
- Overbeek, Ross; Olson, Robert; Pusch, Gordon D.
- Nucleic Acids Research, Vol. 42, Issue D1
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
journal, January 2007
- Klappenbach, Joel A.; Goris, Johan; Vandamme, Peter
- International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 1
Bypassing Cultivation To Identify Bacterial Species: Culture-independent genomic approaches identify credibly distinct clusters, avoid cultivation bias, and provide true insights into microbial species
journal, March 2014
- Rodriguez-R, Luis M.; Konstantinidis, Konstantinos T.
- Microbe Magazine, Vol. 9, Issue 3
Contribution of alginate and levan production to biofilm formation by Pseudomonas syringae
journal, October 2006
- Laue, Heike; Schenk, Alexander; Li, Hongqiao
- Microbiology, Vol. 152, Issue 10
Pseudomonas biofilm matrix composition and niche biology
journal, July 2012
- Mann, Ethan E.; Wozniak, Daniel J.
- FEMS Microbiology Reviews, Vol. 36, Issue 4
The biofilm matrix
journal, August 2010
- Flemming, Hans-Curt; Wingender, Jost
- Nature Reviews Microbiology, Vol. 8, Issue 9
Works referencing / citing this record:
Microbial communities in Bakken region produced water
journal, April 2018
- Lipus, Daniel; Roy, Dhritikshama; Khan, Eakalak
- FEMS Microbiology Letters, Vol. 365, Issue 12