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Title: Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome

Abstract

We report the 5,425,832 bp draft genome ofPseudomonassp. strain BDAL1, recovered from a Bakken shale hydraulic fracturing-produced water tank metagenome. Genome annotation revealed several key biofilm formation genes and osmotic stress response mechanisms necessary for survival in hydraulic fracturing-produced water.

Authors:
 [1];  [2]; ORCiD logo [3];  [4]
  1. Univ. of Pittsburgh, PA (United States). Dept. of Civil and Environmental Engineering; National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)
  2. National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States); AECOM, Pittsburgh, PA (United States)
  3. Univ. of Pittsburgh, PA (United States). Dept. of Civil and Environmental Engineering; Univ. of Pittsburgh, PA (United States). Dept. of Computational and Systems Biology
  4. National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)
Publication Date:
Research Org.:
National Energy Technology Lab. (NETL), Pittsburgh, PA, and Morgantown, WV (United States). In-house Research
Sponsoring Org.:
USDOE
OSTI Identifier:
1351177
Report Number(s):
NETL-DOE-20715
Journal ID: ISSN 2169-8287
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 5; Journal Issue: 11; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Genome, Pseudomonas, Bakken Shale, Geomicrobiology

Citation Formats

Lipus, Daniel, Ross, Daniel, Bibby, Kyle, and Gulliver, Djuna. Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome. United States: N. p., 2017. Web. doi:10.1128/genomeA.00033-17.
Lipus, Daniel, Ross, Daniel, Bibby, Kyle, & Gulliver, Djuna. Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome. United States. https://doi.org/10.1128/genomeA.00033-17
Lipus, Daniel, Ross, Daniel, Bibby, Kyle, and Gulliver, Djuna. Thu . "Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome". United States. https://doi.org/10.1128/genomeA.00033-17. https://www.osti.gov/servlets/purl/1351177.
@article{osti_1351177,
title = {Draft Genome Sequence of Pseudomonas sp. BDAL1 Reconstructed from a Bakken Shale Hydraulic Fracturing-Produced Water Storage Tank Metagenome},
author = {Lipus, Daniel and Ross, Daniel and Bibby, Kyle and Gulliver, Djuna},
abstractNote = {We report the 5,425,832 bp draft genome ofPseudomonassp. strain BDAL1, recovered from a Bakken shale hydraulic fracturing-produced water tank metagenome. Genome annotation revealed several key biofilm formation genes and osmotic stress response mechanisms necessary for survival in hydraulic fracturing-produced water.},
doi = {10.1128/genomeA.00033-17},
journal = {Genome Announcements},
number = 11,
volume = 5,
place = {United States},
year = {Thu Mar 16 00:00:00 EDT 2017},
month = {Thu Mar 16 00:00:00 EDT 2017}
}

Works referenced in this record:

Temporal Changes in Microbial Ecology and Geochemistry in Produced Water from Hydraulically Fractured Marcellus Shale Gas Wells
journal, May 2014

  • Cluff, Maryam A.; Hartsock, Angela; MacRae, Jean D.
  • Environmental Science & Technology, Vol. 48, Issue 11
  • DOI: 10.1021/es501173p

Natural Gas Plays in the Marcellus Shale: Challenges and Potential Opportunities
journal, August 2010

  • Kargbo, David M.; Wilhelm, Ron G.; Campbell, David J.
  • Environmental Science & Technology, Vol. 44, Issue 15, p. 5679-5684
  • DOI: 10.1021/es903811p

Water Management Challenges Associated with the Production of Shale Gas by Hydraulic Fracturing
journal, June 2011


A Critical Review of the Risks to Water Resources from Unconventional Shale Gas Development and Hydraulic Fracturing in the United States
journal, March 2014

  • Vengosh, Avner; Jackson, Robert B.; Warner, Nathaniel
  • Environmental Science & Technology, Vol. 48, Issue 15
  • DOI: 10.1021/es405118y

Microbial Community Changes in Hydraulic Fracturing Fluids and Produced Water from Shale Gas Extraction
journal, October 2013

  • Murali Mohan, Arvind; Hartsock, Angela; Bibby, Kyle J.
  • Environmental Science & Technology, Vol. 47, Issue 22
  • DOI: 10.1021/es402928b

Microbial communities in flowback water impoundments from hydraulic fracturing for recovery of shale gas
journal, August 2013

  • Murali Mohan, Arvind; Hartsock, Angela; Hammack, Richard W.
  • FEMS Microbiology Ecology, Vol. 86, Issue 3
  • DOI: 10.1111/1574-6941.12183

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
journal, May 2012

  • Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry
  • Journal of Computational Biology, Vol. 19, Issue 5
  • DOI: 10.1089/cmb.2012.0021

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data
journal, January 2015


Accurate phylogenetic classification of variable-length DNA fragments
journal, December 2006

  • McHardy, Alice Carolyn; Martín, Héctor García; Tsirigos, Aristotelis
  • Nature Methods, Vol. 4, Issue 1
  • DOI: 10.1038/nmeth976

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015

  • Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T.
  • Genome Research, Vol. 25, Issue 7
  • DOI: 10.1101/gr.186072.114

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
journal, September 2008


The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013

  • Overbeek, Ross; Olson, Robert; Pusch, Gordon D.
  • Nucleic Acids Research, Vol. 42, Issue D1
  • DOI: 10.1093/nar/gkt1226

DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
journal, January 2007

  • Klappenbach, Joel A.; Goris, Johan; Vandamme, Peter
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 1
  • DOI: 10.1099/ijs.0.64483-0

Contribution of alginate and levan production to biofilm formation by Pseudomonas syringae
journal, October 2006

  • Laue, Heike; Schenk, Alexander; Li, Hongqiao
  • Microbiology, Vol. 152, Issue 10
  • DOI: 10.1099/mic.0.28875-0

Pseudomonas biofilm matrix composition and niche biology
journal, July 2012


The biofilm matrix
journal, August 2010

  • Flemming, Hans-Curt; Wingender, Jost
  • Nature Reviews Microbiology, Vol. 8, Issue 9
  • DOI: 10.1038/nrmicro2415

Works referencing / citing this record:

Microbial communities in Bakken region produced water
journal, April 2018

  • Lipus, Daniel; Roy, Dhritikshama; Khan, Eakalak
  • FEMS Microbiology Letters, Vol. 365, Issue 12
  • DOI: 10.1093/femsle/fny107