Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms
Abstract
Dissimilatory sulfate reduction in peatlands is sustained by a cryptic sulfur cycle and effectively competes with methanogenic degradation pathways. In a series of peat soil microcosms incubated over 50 days, we identified bacterial consortia that responded to small, periodic additions of individual fermentation products (formate, acetate, propionate, lactate or butyrate) in the presence or absence of sulfate. Under sulfate supplementation, net sulfate turnover (ST) steadily increased to 16-174 nmol cm -3 per day and almost completely blocked methanogenesis. 16S rRNA gene and cDNA amplicon sequencing identified microorganisms whose increases in ribosome numbers strongly correlated to ST. Natively abundant (≥0.1% estimated genome abundance) species-level operational taxonomic units (OTUs) showed no significant response to sulfate. In contrast, low-abundance OTUs responded significantly to sulfate in incubations with propionate, lactate and butyrate. These OTUs included members of recognized sulfate-reducing taxa (Desulfosporosinus, Desulfopila, Desulfomonile, Desulfovibrio) and also members of taxa that are either yet unknown sulfate reducers or metabolic interaction partners thereof. Most responsive OTUs markedly increased their ribosome content but only weakly increased in abundance. Responsive Desulfosporosinus OTUs even maintained a constantly low population size throughout 50 days, which suggests a novel strategy of rare biosphere members to display activity. Interestingly, two OTUs ofmore »
- Authors:
-
[1];
[2];
[4];
[3];
[1]
- Univ. of Vienna (Austria); Univ. of Konstanz (Germany)
- Univ. of Munster (Germany)
- Univ. of Vienna (Austria)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Publication Date:
- Research Org.:
- USDOE Joint Genome Institute (JGI), Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- German Research Foundation (DFG); USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1347110
- Alternate Identifier(s):
- OSTI ID: 1377513
- Grant/Contract Number:
- AC02-05CH11231; PCIG14- GA-2013-630188
- Resource Type:
- Accepted Manuscript
- Journal Name:
- The ISME Journal
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 10; Journal ID: ISSN 1751-7362
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES
Citation Formats
Hausmann, Bela, Knorr, Klaus-Holger, Schreck, Katharina, Tringe, Susannah G., Glavina del Rio, Tijana, Loy, Alexander, and Pester, Michael. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. United States: N. p., 2016.
Web. doi:10.1038/ismej.2016.42.
Hausmann, Bela, Knorr, Klaus-Holger, Schreck, Katharina, Tringe, Susannah G., Glavina del Rio, Tijana, Loy, Alexander, & Pester, Michael. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. United States. https://doi.org/10.1038/ismej.2016.42
Hausmann, Bela, Knorr, Klaus-Holger, Schreck, Katharina, Tringe, Susannah G., Glavina del Rio, Tijana, Loy, Alexander, and Pester, Michael. Fri .
"Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms". United States. https://doi.org/10.1038/ismej.2016.42. https://www.osti.gov/servlets/purl/1347110.
@article{osti_1347110,
title = {Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms},
author = {Hausmann, Bela and Knorr, Klaus-Holger and Schreck, Katharina and Tringe, Susannah G. and Glavina del Rio, Tijana and Loy, Alexander and Pester, Michael},
abstractNote = {Dissimilatory sulfate reduction in peatlands is sustained by a cryptic sulfur cycle and effectively competes with methanogenic degradation pathways. In a series of peat soil microcosms incubated over 50 days, we identified bacterial consortia that responded to small, periodic additions of individual fermentation products (formate, acetate, propionate, lactate or butyrate) in the presence or absence of sulfate. Under sulfate supplementation, net sulfate turnover (ST) steadily increased to 16-174 nmol cm -3 per day and almost completely blocked methanogenesis. 16S rRNA gene and cDNA amplicon sequencing identified microorganisms whose increases in ribosome numbers strongly correlated to ST. Natively abundant (≥0.1% estimated genome abundance) species-level operational taxonomic units (OTUs) showed no significant response to sulfate. In contrast, low-abundance OTUs responded significantly to sulfate in incubations with propionate, lactate and butyrate. These OTUs included members of recognized sulfate-reducing taxa (Desulfosporosinus, Desulfopila, Desulfomonile, Desulfovibrio) and also members of taxa that are either yet unknown sulfate reducers or metabolic interaction partners thereof. Most responsive OTUs markedly increased their ribosome content but only weakly increased in abundance. Responsive Desulfosporosinus OTUs even maintained a constantly low population size throughout 50 days, which suggests a novel strategy of rare biosphere members to display activity. Interestingly, two OTUs of the non-sulfate-reducing genus Telmatospirillum (Alphaproteobacteria) showed strongly contrasting preferences towards sulfate in butyrate-amended microcosms, corroborating that closely related microorganisms are not necessarily ecologically coherent. We show that diverse consortia of low-abundance microorganisms can perform peat soil sulfate reduction, a process that exerts control on methane production in these climate-relevant ecosystems.},
doi = {10.1038/ismej.2016.42},
journal = {The ISME Journal},
number = 10,
volume = 10,
place = {United States},
year = {Fri Mar 25 00:00:00 EDT 2016},
month = {Fri Mar 25 00:00:00 EDT 2016}
}
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- Anantharaman, Karthik; Hausmann, Bela; Jungbluth, Sean P.
- The ISME Journal, Vol. 12, Issue 7
Bacterial interactions during sequential degradation of cyanobacterial necromass in a sulfidic arctic marine sediment: Necromass degradation in arctic marine sediment
journal, August 2018
- Müller, Albert L.; Pelikan, Claus; de Rezende, Julia R.
- Environmental Microbiology, Vol. 20, Issue 8
Draft Genome Sequence of Desulfosporosinus sp. Strain Sb-LF, Isolated from an Acidic Peatland in Germany
journal, July 2019
- Hausmann, Bela; Pjevac, Petra; Huemer, Martin
- Microbiology Resource Announcements, Vol. 8, Issue 29
Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino
journal, February 2019
- Antwis, Rachael E.; Edwards, Katie L.; Unwin, Bryony
- Microbiome, Vol. 7, Issue 1
A single Thaumarchaeon drives nitrification in deep oligotrophic Lake Constance
text, January 2020
- Herber, J.; Klotz, F.; Frommeyer, B.
- Wiley
Abundance of freshwater Nitrososphaeria in Lake Constance, Germany
dataset, January 2021
- Klotz, Franziska; Pester, Michael
- PANGAEA - Data Publisher for Earth & Environmental Science
Where less may be more: how the rare biosphere pulls ecosystems strings
text, January 2017
- Jousset, Alexandre; Rillig, Matthias C.; Bienhold, Christina
- Freie Universität Berlin