Bacterial endophyte communities in the foliage of coast redwood and giant sequoia
Abstract
The endophytic bacterial microbiome, with an emerging role in plant nutrient acquisition and stress tolerance, is much less studied in natural plant populations than in agricultural crops. In a previous study, we found consistent associations between trees in the pine family and acetic acid bacteria (AAB) occurring at high relative abundance inside their needles. Our objective here was to determine if that pattern may be general to conifers, or alternatively, is more likely restricted to pines or conifers growing in nutrient limited and exposed environments. We used 16S rRNA pyrosequencing to characterize the foliar endophyte communities of two conifers in the Cupressaceae family: Two coast redwood (CR; Sequoia sempervirens) populations and one giant sequoia (GS; Sequoiadendron giganteum) population were sampled. Similar to the pines, the endophyte communities of the giant trees were dominated by Proteobacteria, Firmicutes, Acidobacteria, and Actinobacteria. However, although some major operational taxonomic units (OTUs) occurred at a high relative abundance of 10–40% in multiple samples, no specific group of bacteria dominated the endophyte community to the extent previously observed in high-elevation pines. Several of the dominating bacterial groups in the CR and GS foliage (e.g., Bacillus, Burkholderia, Actinomycetes) are known for disease- and pest suppression, raising themore »
- Authors:
-
- University of California, Merced, CA (United States). Life and Environmental Sciences, School of Natural Sciences; Duke Univ., Durham, NC (United States). Department of Biology; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Environmental Sciences Division
- University of California, Merced, CA (United States). Life and Environmental Sciences, School of Natural Sciences and Sierra Nevada Research Institute
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1341541
- Grant/Contract Number:
- AC05-00OR22725
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 6; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; 54 ENVIRONMENTAL SCIENCES; bacterial endophytes; 16S rRNA; foliage; microbiome; giant sequoia; redwood; Sequoia sempervirens; Sequoiadendron giganteum
Citation Formats
Carrell, Alyssa A., and Frank, Anna C. Bacterial endophyte communities in the foliage of coast redwood and giant sequoia. United States: N. p., 2015.
Web. doi:10.3389/fmicb.2015.01008.
Carrell, Alyssa A., & Frank, Anna C. Bacterial endophyte communities in the foliage of coast redwood and giant sequoia. United States. https://doi.org/10.3389/fmicb.2015.01008
Carrell, Alyssa A., and Frank, Anna C. Tue .
"Bacterial endophyte communities in the foliage of coast redwood and giant sequoia". United States. https://doi.org/10.3389/fmicb.2015.01008. https://www.osti.gov/servlets/purl/1341541.
@article{osti_1341541,
title = {Bacterial endophyte communities in the foliage of coast redwood and giant sequoia},
author = {Carrell, Alyssa A. and Frank, Anna C.},
abstractNote = {The endophytic bacterial microbiome, with an emerging role in plant nutrient acquisition and stress tolerance, is much less studied in natural plant populations than in agricultural crops. In a previous study, we found consistent associations between trees in the pine family and acetic acid bacteria (AAB) occurring at high relative abundance inside their needles. Our objective here was to determine if that pattern may be general to conifers, or alternatively, is more likely restricted to pines or conifers growing in nutrient limited and exposed environments. We used 16S rRNA pyrosequencing to characterize the foliar endophyte communities of two conifers in the Cupressaceae family: Two coast redwood (CR; Sequoia sempervirens) populations and one giant sequoia (GS; Sequoiadendron giganteum) population were sampled. Similar to the pines, the endophyte communities of the giant trees were dominated by Proteobacteria, Firmicutes, Acidobacteria, and Actinobacteria. However, although some major operational taxonomic units (OTUs) occurred at a high relative abundance of 10–40% in multiple samples, no specific group of bacteria dominated the endophyte community to the extent previously observed in high-elevation pines. Several of the dominating bacterial groups in the CR and GS foliage (e.g., Bacillus, Burkholderia, Actinomycetes) are known for disease- and pest suppression, raising the possibility that the endophytic microbiome protects the giant trees against biotic stress. Many of the most common and abundant OTUs in our dataset were most similar to 16S rRNA sequences from bacteria found in lichens or arctic plants. For example, an OTU belonging to the uncultured Rhizobiales LAR1 lineage, which is commonly associated with lichens, was observed at high relative abundance in many of the CR samples. Lastly, the taxa shared between the giant trees, arctic plants, and lichens may be part of a broadly defined endophyte microbiome common to temperate, boreal, and tundra ecosystems.},
doi = {10.3389/fmicb.2015.01008},
journal = {Frontiers in Microbiology},
number = ,
volume = 6,
place = {United States},
year = {Tue Sep 22 00:00:00 EDT 2015},
month = {Tue Sep 22 00:00:00 EDT 2015}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 36 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
In Vitro Interactions Between Yeasts and Bacteria and the Fungal Symbionts of the Mountain Pine Beetle (Dendroctonus ponderosae)
journal, March 2008
- Adams, Aaron S.; Six, Diana L.; Adams, Sandye M.
- Microbial Ecology, Vol. 56, Issue 3
Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities
journal, January 2015
- Aleklett, Kristin; Leff, Jonathan W.; Fierer, Noah
- PeerJ, Vol. 3
N2-Fixation and Seedling Growth Promotion of Lodgepole Pine by Endophytic Paenibacillus polymyxa
journal, February 2013
- Anand, Richa; Grayston, Susan; Chanway, Christopher
- Microbial Ecology, Vol. 66, Issue 2
Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR
journal, March 2007
- Arnold, A. E.; Henk, D. A.; Eells, R. L.
- Mycologia, Vol. 99, Issue 2
Douglas-fir root-associated microorganisms with inhibitory activity towards fungal plant pathogens and human bacterial pathogens
journal, July 1996
- Axelrood, Paige E.; Clarke, Alison M.; Radley, Reed
- Canadian Journal of Microbiology, Vol. 42, Issue 7
In planta reduction of maize seedling stalk lesions by the bacterial endophyte Bacillus mojavensis
journal, June 2011
- Bacon, Charles W.; Hinton, Dorothy M.
- Canadian Journal of Microbiology, Vol. 57, Issue 6
The plant microbiome and its importance for plant and human health
journal, January 2014
- Berg, Gabriele
- Frontiers in Microbiology, Vol. 5
Comparative analysis of defence responses induced by the endophytic plant growth-promoting rhizobacterium Burkholderia phytofirmans strain PsJN and the non-host bacterium Pseudomonas syringae pv. pisi in grapevine cell suspensions
journal, September 2010
- Bordiec, S.; Paquis, S.; Lacroix, H.
- Journal of Experimental Botany, Vol. 62, Issue 2
Vertical transmission explains the specific Burkholderia pattern in Sphagnum mosses at multi-geographic scale
journal, January 2013
- Bragina, Anastasia; Cardinale, Massimiliano; Berg, Christian
- Frontiers in Microbiology, Vol. 4
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
journal, August 2012
- Bulgarelli, Davide; Rott, Matthias; Schlaeppi, Klaus
- Nature, Vol. 488, Issue 7409
PyNAST: a flexible tool for aligning sequences to a template alignment
journal, November 2009
- Caporaso, J. G.; Bittinger, K.; Bushman, F. D.
- Bioinformatics, Vol. 26, Issue 2
Pinus flexilis and Piceae engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation
journal, July 2014
- Carrell, Alyssa A.; Frank, Anna C.
- Frontiers in Microbiology, Vol. 5
Fungal Endophytes in Stems and Leaves: From Latent Pathogen to Mutualistic Symbiont
journal, February 1988
- Carroll, George
- Ecology, Vol. 69, Issue 1
Studies on the incidence of coniferous needle endophytes in the Pacific Northwest
journal, December 1978
- Carroll, George C.; Carroll, Fanny E.
- Canadian Journal of Botany, Vol. 56, Issue 24
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
journal, February 2001
- Chelius, M. K.; Triplett, E. W.
- Microbial Ecology, Vol. 41, Issue 3
Intracellular colonization of roots of Arabidopsis and crop plants by Gluconacetobacter diazotrophicus
journal, January 2006
- Cocking, Edward C.; Stone, Philip J.; Davey, Michael R.
- In Vitro Cellular & Developmental Biology - Plant, Vol. 42, Issue 1
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
journal, July 2006
- DeSantis, T. Z.; Hugenholtz, P.; Larsen, N.
- Applied and Environmental Microbiology, Vol. 72, Issue 7, p. 5069-5072
Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea
journal, February 2007
- Dutta, D.; Gachhui, R.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 2
UCHIME improves sensitivity and speed of chimera detection
journal, June 2011
- Edgar, Robert C.; Haas, Brian J.; Clemente, Jose C.
- Bioinformatics, Vol. 27, Issue 16
Structure, variation, and assembly of the root-associated microbiomes of rice
journal, January 2015
- Edwards, Joseph; Johnson, Cameron; Santos-Medellín, Christian
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 8
Endophytic Colonization and In Planta Nitrogen Fixation by a Herbaspirillum sp. Isolated from Wild Rice Species
journal, November 2001
- Elbeltagy, A.; Nishioka, K.; Sato, T.
- Applied and Environmental Microbiology, Vol. 67, Issue 11
The endophytic fungal community in leaves of a coastal redwood population diversity and spatial patterns
journal, September 1990
- Espinosa-Garcia, F. J.; Langenheim, J. H.
- New Phytologist, Vol. 116, Issue 1
Fog Water and Ecosystem Function: Heterogeneity in a California Redwood Forest
journal, February 2009
- Ewing, Holly A.; Weathers, Kathleen C.; Templer, Pamela H.
- Ecosystems, Vol. 12, Issue 3
Microbially Mediated Plant Functional Traits
journal, December 2011
- Friesen, Maren L.; Porter, Stephanie S.; Stark, Scott C.
- Annual Review of Ecology, Evolution, and Systematics, Vol. 42, Issue 1
Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants.
journal, July 2001
- Bustillos-Cristales, R.; Jiménez-Salgado, T.; Fuentes-Ramírez, L. E.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 51, Issue 4
A community of unknown, endophytic fungi in western white pine
journal, June 2004
- Ganley, R. J.; Brunsfeld, S. J.; Newcombe, G.
- Proceedings of the National Academy of Sciences, Vol. 101, Issue 27
Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types
journal, July 2011
- Gottel, Neil R.; Castro, Hector F.; Kerley, Marilyn
- Applied and Environmental Microbiology, Vol. 77, Issue 17
Species-specific structural and functional diversity of bacterial communities in lichen symbioses
journal, June 2009
- Grube, Martin; Cardinale, Massimiliano; de Castro, João Vieira
- The ISME Journal, Vol. 3, Issue 9
Properties of bacterial endophytes and their proposed role in plant growth
journal, October 2008
- Hardoim, Pablo R.; van Overbeek, Leo S.; Elsas, Jan Dirk van
- Trends in Microbiology, Vol. 16, Issue 10
Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome: Prokaryotic communities of the lichen microbiome
journal, September 2011
- Hodkinson, Brendan P.; Gottel, Neil R.; Schadt, Christopher W.
- Environmental Microbiology, Vol. 14, Issue 1
A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales
journal, December 2009
- Hodkinson, Brendan P.; Lutzoni, François
- Symbiosis, Vol. 49, Issue 3
Enrichment for microbes living in association with plant tissues
journal, April 2006
- Jiao, J. -Y.; Wang, H. -X.; Zeng, Y.
- Journal of Applied Microbiology, Vol. 100, Issue 4
Rational Approaches to Improving the Isolation of Endophytic Actinobacteria from Australian Native Trees
journal, September 2012
- Kaewkla, Onuma; Franco, Christopher M. M.
- Microbial Ecology, Vol. 65, Issue 2
Biological nitrogen fixation and biomass accumulation within poplar clones as a result of inoculations with diazotrophic endophyte consortia
journal, October 2013
- Knoth, Jenny L.; Kim, Soo-Hyung; Ettl, Gregory J.
- New Phytologist, Vol. 201, Issue 2
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
journal, April 2011
- Letunic, I.; Bork, P.
- Nucleic Acids Research, Vol. 39, Issue suppl
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
journal, December 2005
- Lozupone, C.; Knight, R.
- Applied and Environmental Microbiology, Vol. 71, Issue 12
Defining the core Arabidopsis thaliana root microbiome
journal, August 2012
- Lundberg, Derek S.; Lebeis, Sarah L.; Paredes, Sur Herrera
- Nature, Vol. 488, Issue 7409
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
journal, May 2011
- Mendes, R.; Kruijt, M.; de Bruijn, I.
- Science, Vol. 332, Issue 6033
Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees
journal, March 2015
- Müller, Henry; Berg, Christian; Landa, Blanca B.
- Frontiers in Microbiology, Vol. 6
Infernal 1.0: inference of RNA alignments
journal, March 2009
- Nawrocki, E. P.; Kolbe, D. L.; Eddy, S. R.
- Bioinformatics, Vol. 25, Issue 10
Endophytic bacterial communities in three arctic plants from low arctic fell tundra are cold-adapted and host-plant specific
journal, August 2012
- Nissinen, Riitta M.; Männistö, Minna K.; van Elsas, Jan Dirk
- FEMS Microbiology Ecology, Vol. 82, Issue 2
Bacillus lipopeptides: versatile weapons for plant disease biocontrol
journal, March 2008
- Ongena, Marc; Jacques, Philippe
- Trends in Microbiology, Vol. 16, Issue 3
Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species
journal, August 2014
- Oono, Ryoko; Lutzoni, François; Arnold, A. Elizabeth
- American Journal of Botany, Vol. 101, Issue 8
The foliar microbiome
journal, May 2014
- Peñuelas, Josep; Terradas, Jaume
- Trends in Plant Science, Vol. 19, Issue 5
Hidden Fungi, Emergent Properties: Endophytes and Microbiomes
journal, September 2011
- Porras-Alfaro, Andrea; Bayman, Paul
- Annual Review of Phytopathology, Vol. 49, Issue 1
Effect of successive cauliflower plantings and Rhizoctonia solani AG 2-1 inoculations on disease suppressiveness of a suppressive and a conducive soil
journal, May 2010
- Postma, J.; Scheper, R. W. A.; Schilder, M. T.
- Soil Biology and Biochemistry, Vol. 42, Issue 5
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
journal, April 2009
- Price, M. N.; Dehal, P. S.; Arkin, A. P.
- Molecular Biology and Evolution, Vol. 26, Issue 7
Diversity, Molecular Phylogeny, and Bioactive Potential of Fungal Endophytes Associated with the Himalayan Blue Pine (Pinus wallichiana)
journal, February 2014
- Qadri, Masroor; Rajput, Roopali; Abdin, Malik Z.
- Microbial Ecology, Vol. 67, Issue 4
Biodiversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria
journal, October 2010
- Qin, Sheng; Xing, Ke; Jiang, Ji-Hong
- Applied Microbiology and Biotechnology, Vol. 89, Issue 3
Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria
journal, September 2012
- Raaijmakers, Jos M.; Mazzola, Mark
- Annual Review of Phytopathology, Vol. 50, Issue 1
The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves: Biogeography of phyllosphere bacterial communities
journal, November 2010
- Redford, Amanda J.; Bowers, Robert M.; Knight, Rob
- Environmental Microbiology, Vol. 12, Issue 11
Living inside plants: bacterial endophytes
journal, August 2011
- Reinhold-Hurek, Barbara; Hurek, Thomas
- Current Opinion in Plant Biology, Vol. 14, Issue 4
The Role of Fungal Symbioses in the Adaptation of Plants to High Stress Environments
journal, July 2004
- Rodriguez, Russell J.; Redman, Regina S.; Henson, Joan M.
- Mitigation and Adaptation Strategies for Global Change, Vol. 9, Issue 3
Geographic Survey of Fungal Endophyte Community Composition in Leaves of Coastal Redwood
journal, March 1993
- Rollinger, Jeanette L.; Langenheim, Jean H.
- Mycologia, Vol. 85, Issue 2
Bacterial Endophytes and Their Interactions with Hosts
journal, August 2006
- Rosenblueth, Mónica; Martínez-Romero, Esperanza
- Molecular Plant-Microbe Interactions, Vol. 19, Issue 8
Bacterial endophytes enhance competition by invasive plants
journal, September 2013
- Rout, Marnie E.; Chrzanowski, Thomas H.; Westlie, Tara K.
- American Journal of Botany, Vol. 100, Issue 9
Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives
journal, December 2013
- Schlaeppi, K.; Dombrowski, N.; Oter, R. G.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 2
A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013
- Shakya, Migun; Gottel, Neil; Castro, Hector
- PLoS ONE, Vol. 8, Issue 10
Seasonal variation of bacterial endophytes in urban trees
journal, May 2015
- Shen, Shu Yi; Fulthorpe, Roberta
- Frontiers in Microbiology, Vol. 6
Trunk Reiteration Promotes Epiphytes and Water Storage in an Old-Growth Redwood Forest Canopy
journal, August 2007
- Sillett, Stephen C.; Pelt, Robert Van
- Ecological Monographs, Vol. 77, Issue 3
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
journal, December 2004
- Stamatakis, A.; Ludwig, T.; Meier, H.
- Bioinformatics, Vol. 21, Issue 4
Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia
journal, August 2011
- Suárez-Moreno, Zulma Rocío; Caballero-Mellado, Jesús; Coutinho, Bruna G.
- Microbial Ecology, Vol. 63, Issue 2
Rare actinomycetes: a potential storehouse for novel antibiotics
journal, May 2011
- Tiwari, Kavita; Gupta, Rajinder K.
- Critical Reviews in Biotechnology, Vol. 32, Issue 2
The plant microbiome
journal, June 2013
- Turner, Thomas R.; James, Euan K.; Poole, Philip S.
- Genome Biology, Vol. 14, Issue 6
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
journal, June 2007
- Wang, Q.; Garrity, G. M.; Tiedje, J. M.
- Applied and Environmental Microbiology, Vol. 73, Issue 16
Possible effects of temperature on bacterial communities in the rhizosphere of rice under different climatic regions
journal, March 2022
- Zhang, Yang; Zhang, Yujie; Xu, Wenjie
- Archives of Microbiology, Vol. 204, Issue 4
Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia
journal, August 2011
- Suárez-Moreno, Zulma Rocío; Caballero-Mellado, Jesús; Coutinho, Bruna G.
- Microbial Ecology, Vol. 63, Issue 2
Rational Approaches to Improving the Isolation of Endophytic Actinobacteria from Australian Native Trees
journal, September 2012
- Kaewkla, Onuma; Franco, Christopher M. M.
- Microbial Ecology, Vol. 65, Issue 2
N2-Fixation and Seedling Growth Promotion of Lodgepole Pine by Endophytic Paenibacillus polymyxa
journal, February 2013
- Anand, Richa; Grayston, Susan; Chanway, Christopher
- Microbial Ecology, Vol. 66, Issue 2
Diversity, Molecular Phylogeny, and Bioactive Potential of Fungal Endophytes Associated with the Himalayan Blue Pine (Pinus wallichiana)
journal, February 2014
- Qadri, Masroor; Rajput, Roopali; Abdin, Malik Z.
- Microbial Ecology, Vol. 67, Issue 4
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
journal, February 2001
- Chelius, M. K.; Triplett, E. W.
- Microbial Ecology, Vol. 41, Issue 3
Biodiversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria
journal, October 2010
- Qin, Sheng; Xing, Ke; Jiang, Ji-Hong
- Applied Microbiology and Biotechnology, Vol. 89, Issue 3
Fog Water and Ecosystem Function: Heterogeneity in a California Redwood Forest
journal, February 2009
- Ewing, Holly A.; Weathers, Kathleen C.; Templer, Pamela H.
- Ecosystems, Vol. 12, Issue 3
A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales
journal, December 2009
- Hodkinson, Brendan P.; Lutzoni, François
- Symbiosis, Vol. 49, Issue 3
Living inside plants: bacterial endophytes
journal, August 2011
- Reinhold-Hurek, Barbara; Hurek, Thomas
- Current Opinion in Plant Biology, Vol. 14, Issue 4
Effect of successive cauliflower plantings and Rhizoctonia solani AG 2-1 inoculations on disease suppressiveness of a suppressive and a conducive soil
journal, May 2010
- Postma, J.; Scheper, R. W. A.; Schilder, M. T.
- Soil Biology and Biochemistry, Vol. 42, Issue 5
Properties of bacterial endophytes and their proposed role in plant growth
journal, October 2008
- Hardoim, Pablo R.; van Overbeek, Leo S.; Elsas, Jan Dirk van
- Trends in Microbiology, Vol. 16, Issue 10
The foliar microbiome
journal, May 2014
- Peñuelas, Josep; Terradas, Jaume
- Trends in Plant Science, Vol. 19, Issue 5
Species-specific structural and functional diversity of bacterial communities in lichen symbioses
journal, June 2009
- Grube, Martin; Cardinale, Massimiliano; de Castro, João Vieira
- The ISME Journal, Vol. 3, Issue 9
Defining the core Arabidopsis thaliana root microbiome
journal, August 2012
- Lundberg, Derek S.; Lebeis, Sarah L.; Paredes, Sur Herrera
- Nature, Vol. 488, Issue 7409
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
journal, August 2012
- Bulgarelli, Davide; Rott, Matthias; Schlaeppi, Klaus
- Nature, Vol. 488, Issue 7409
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi
journal, September 2020
- Hughes, Riley L.; Arnold, Charles D.; Young, Rebecca R.
- Scientific Reports, Vol. 10, Issue 1
Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives
journal, December 2013
- Schlaeppi, K.; Dombrowski, N.; Oter, R. G.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 2
Geographic Survey of Fungal Endophyte Community Composition in Leaves of Coastal Redwood
journal, March 1993
- Rollinger, Jeanette L.; Langenheim, Jean H.
- Mycologia, Vol. 85, Issue 2
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
journal, December 2004
- Stamatakis, A.; Ludwig, T.; Meier, H.
- Bioinformatics, Vol. 21, Issue 4
Infernal 1.0: inference of RNA alignments
journal, March 2009
- Nawrocki, E. P.; Kolbe, D. L.; Eddy, S. R.
- Bioinformatics, Vol. 25, Issue 10
PyNAST: a flexible tool for aligning sequences to a template alignment
journal, November 2009
- Caporaso, J. G.; Bittinger, K.; Bushman, F. D.
- Bioinformatics, Vol. 26, Issue 2
UCHIME improves sensitivity and speed of chimera detection
journal, June 2011
- Edgar, Robert C.; Haas, Brian J.; Clemente, Jose C.
- Bioinformatics, Vol. 27, Issue 16
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
journal, April 2009
- Price, M. N.; Dehal, P. S.; Arkin, A. P.
- Molecular Biology and Evolution, Vol. 26, Issue 7
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
journal, April 2011
- Letunic, I.; Bork, P.
- Nucleic Acids Research, Vol. 39, Issue suppl
Burkholderia phytofirmans PsJN Primes Vitis vinifera L. and Confers a Better Tolerance to Low Nonfreezing Temperatures
journal, February 2012
- Theocharis, Andreas; Bordiec, Sophie; Fernandez, Olivier
- Molecular Plant-Microbe Interactions, Vol. 25, Issue 2
Sources of Inoculum for Phytophthora ramorum in a Redwood Forest
journal, August 2008
- Davidson, J. M.; Patterson, H. A.; Rizzo, D. M.
- Phytopathology, Vol. 98, Issue 8
Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants.
journal, July 2001
- Bustillos-Cristales, R.; Jiménez-Salgado, T.; Fuentes-Ramírez, L. E.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 51, Issue 4
Nitrogen-fixing and cellulose-producing Gluconacetobacter kombuchae sp. nov., isolated from Kombucha tea
journal, February 2007
- Dutta, D.; Gachhui, R.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 2
Enrichment for microbes living in association with plant tissues
journal, April 2006
- Jiao, J. -Y.; Wang, H. -X.; Zeng, Y.
- Journal of Applied Microbiology, Vol. 100, Issue 4
Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome: Prokaryotic communities of the lichen microbiome
journal, September 2011
- Hodkinson, Brendan P.; Gottel, Neil R.; Schadt, Christopher W.
- Environmental Microbiology, Vol. 14, Issue 1
The endophytic fungal community in leaves of a coastal redwood population diversity and spatial patterns
journal, September 1990
- Espinosa-Garcia, F. J.; Langenheim, J. H.
- New Phytologist, Vol. 116, Issue 1
Endophytic bacterial communities in three arctic plants from low arctic fell tundra are cold-adapted and host-plant specific
journal, August 2012
- Nissinen, Riitta M.; Männistö, Minna K.; van Elsas, Jan Dirk
- FEMS Microbiology Ecology, Vol. 82, Issue 2
Biological nitrogen fixation and biomass accumulation within poplar clones as a result of inoculations with diazotrophic endophyte consortia
journal, October 2013
- Knoth, Jenny L.; Kim, Soo-Hyung; Ettl, Gregory J.
- New Phytologist, Vol. 201, Issue 2
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
journal, May 2011
- Mendes, R.; Kruijt, M.; de Bruijn, I.
- Science, Vol. 332, Issue 6033
Complete Genome Sequence of the Endophytic Bacterium Burkholderia sp. Strain KJ006
journal, July 2012
- Kwak, M. -J.; Song, J. Y.; Kim, S. -Y.
- Journal of Bacteriology, Vol. 194, Issue 16
Studies on the incidence of coniferous needle endophytes in the Pacific Northwest
journal, December 1978
- Carroll, George C.; Carroll, Fanny E.
- Canadian Journal of Botany, Vol. 56, Issue 24
In planta reduction of maize seedling stalk lesions by the bacterial endophyte Bacillus mojavensis
journal, June 2011
- Bacon, Charles W.; Hinton, Dorothy M.
- Canadian Journal of Microbiology, Vol. 57, Issue 6
Microbially Mediated Plant Functional Traits
journal, December 2011
- Friesen, Maren L.; Porter, Stephanie S.; Stark, Scott C.
- Annual Review of Ecology, Evolution, and Systematics, Vol. 42, Issue 1
Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria
journal, September 2012
- Raaijmakers, Jos M.; Mazzola, Mark
- Annual Review of Phytopathology, Vol. 50, Issue 1
The plant microbiome
journal, June 2013
- Turner, Thomas R.; James, Euan K.; Poole, Philip S.
- Genome Biology, Vol. 14, Issue 6
A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
journal, October 2013
- Shakya, Migun; Gottel, Neil; Castro, Hector
- PLoS ONE, Vol. 8, Issue 10
Trunk Reiteration Promotes Epiphytes and Water Storage in an Old-Growth Redwood Forest Canopy
journal, August 2007
- Sillett, Stephen C.; Pelt, Robert Van
- Ecological Monographs, Vol. 77, Issue 3
Fungal Endophytes in Stems and Leaves: From Latent Pathogen to Mutualistic Symbiont
journal, February 1988
- Carroll, George
- Ecology, Vol. 69, Issue 1
Pinus flexilis and Piceae engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation
journal, July 2014
- Carrell, Alyssa A.; Frank, Anna C.
- Frontiers in Microbiology, Vol. 5
The plant microbiome and its importance for plant and human health
journal, January 2014
- Berg, Gabriele
- Frontiers in Microbiology, Vol. 5
Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees
journal, March 2015
- Müller, Henry; Berg, Christian; Landa, Blanca B.
- Frontiers in Microbiology, Vol. 6
Seasonal variation of bacterial endophytes in urban trees
journal, May 2015
- Shen, Shu Yi; Fulthorpe, Roberta
- Frontiers in Microbiology, Vol. 6
Bacterial endophytes enhance competition by invasive plants
journal, September 2013
- Rout, Marnie E.; Chrzanowski, Thomas H.; Westlie, Tara K.
- American Journal of Botany, Vol. 100, Issue 9
Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species
journal, August 2014
- Oono, Ryoko; Lutzoni, François; Arnold, A. Elizabeth
- American Journal of Botany, Vol. 101, Issue 8
Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR
journal, March 2007
- Arnold, A. E.; Henk, D. A.; Eells, R. L.
- Mycologia, Vol. 99, Issue 2
Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities
journal, January 2015
- Aleklett, Kristin; Leff, Jonathan W.; Fierer, Noah
- PeerJ, Vol. 3
Data from: Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome
dataset, January 2011
- Hodkinson, Brendan P.; Gottel, Neil R.; Schadt, Christopher W.
- Dryad
Works referencing / citing this record:
Nitrogen Fixing Endophytes in Forest Trees
book, January 2018
- Oses, Rómulo; Frank, A. Carolin; Valenzuela, Sofía
- Endophytes of Forest Trees
Bacterial endophyte communities in Pinus flexilis are structured by host age, tissue type, and environmental factors
journal, May 2018
- Carper, Dana L.; Carrell, Alyssa A.; Kueppers, Lara M.
- Plant and Soil, Vol. 428, Issue 1-2
Forest microbiome: diversity, complexity and dynamics
journal, November 2016
- Baldrian, Petr
- FEMS Microbiology Reviews
Plant host identity and soil macronutrients explain little variation in sapling endophyte community composition: Is disturbance an alternative explanation?
journal, February 2019
- Griffin, Eric A.; Harrison, Joshua G.; Kembel, Steven W.
- Journal of Ecology, Vol. 107, Issue 4
Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer
journal, February 2016
- Moyes, Andrew B.; Kueppers, Lara M.; Pett-Ridge, Jennifer
- New Phytologist, Vol. 210, Issue 2
Members of the genus Burkholderia: good and bad guys
journal, January 2016
- Eberl, Leo; Vandamme, Peter
- F1000Research, Vol. 5
Bacteriome from Pinus arizonica and P. durangensis: Diversity, Comparison of Assemblages, and Overlapping Degree with the Gut Bacterial Community of a Bark Beetle That Kills Pines
journal, January 2018
- Gonzalez-Escobedo, Roman; Briones-Roblero, Carlos I.; Pineda-Mendoza, Rosa M.
- Frontiers in Microbiology, Vol. 9
Diversity analysis of the rhizospheric and endophytic bacterial communities of Senecio vulgaris L. (Asteraceae) in an invasive range
journal, January 2019
- Cheng, Dandan; Tian, Zhongsai; Feng, Liang
- PeerJ, Vol. 6
Members of the genus Burkholderia: good and bad guys
interactiveresource, January 2016
- Leo, Eberl,; Peter, Vandamme,
- Faculty of 1000 Ltd.
Members of the genus Burkholderia: good and bad guys
journal, January 2016
- Eberl, Leo; Vandamme, Peter
- F1000Research, Vol. 5
Associations between Ectomycorrhizal Fungi and Bacterial Needle Endophytes in Pinus radiata: Implications for Biotic Selection of Microbial Communities
journal, March 2016
- Rúa, Megan A.; Wilson, Emily C.; Steele, Sarah
- Frontiers in Microbiology, Vol. 7
Plants Assemble Species Specific Bacterial Communities from Common Core Taxa in Three Arcto-Alpine Climate Zones
journal, January 2017
- Kumar, Manoj; Brader, Günter; Sessitsch, Angela
- Frontiers in Microbiology, Vol. 8
Diversity analysis of the rhizospheric and endophytic bacterial communities of Senecio vulgaris L. (Asteraceae) in an invasive range
journal, January 2019
- Cheng, Dandan; Tian, Zhongsai; Feng, Liang
- PeerJ, Vol. 6