DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Seasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests

Abstract

Understanding the temporal patterns of leaf traits is critical in determining the seasonality and magnitude of terrestrial carbon, water, and energy fluxes. However, we lack robust and efficient ways to monitor the temporal dynamics of leaf traits. Here we assessed the potential of leaf spectroscopy to predict and monitor leaf traits across their entire life cycle at different forest sites and light environments (sunlit vs. shaded) using a weekly sampled dataset across the entire growing season at two temperate deciduous forests. In addition, the dataset includes field measured leaf-level directional-hemispherical reflectance/transmittance together with seven important leaf traits [total chlorophyll (chlorophyll a and b), carotenoids, mass-based nitrogen concentration (Nmass), mass-based carbon concentration (Cmass), and leaf mass per area (LMA)]. All leaf traits varied significantly throughout the growing season, and displayed trait-specific temporal patterns. We used a Partial Least Square Regression (PLSR) modeling approach to estimate leaf traits from spectra, and found that PLSR was able to capture the variability across time, sites, and light environments of all leaf traits investigated (R2 = 0.6–0.8 for temporal variability; R2 = 0.3–0.7 for cross-site variability; R2 = 0.4–0.8 for variability from light environments). We also tested alternative field sampling designs and found that formore » most leaf traits, biweekly leaf sampling throughout the growing season enabled accurate characterization of the seasonal patterns. Compared with the estimation of foliar pigments, the performance of Nmass, Cmass and LMA PLSR models improved more significantly with sampling frequency. Our results demonstrate that leaf spectra-trait relationships vary with time, and thus tracking the seasonality of leaf traits requires statistical models calibrated with data sampled throughout the growing season. In conclusion, our results have broad implications for future research that use vegetation spectra to infer leaf traits at different growing stages.« less

Authors:
ORCiD logo [1];  [2];  [3];  [4];  [5];  [6];  [3]
  1. Brown Univ., Providence, RI (United States). Department of Earth, Environment, and Planetary Sciences; Marine Biological Laboratory, Woods Hole, MA (United States). The Ecosystems Center
  2. Marine Biological Laboratory, Woods Hole, MA (United States). The Ecosystems Center
  3. Brown Univ., Providence, RI (United States). Department of Earth, Environment, and Planetary Sciences
  4. Univ. of Arizona, Tucson, AZ (United States). Department of Ecology and Evolutionary Biology; Brookhaven National Lab. (BNL), Upton, NY (United States). Environmental & Climate Sciences Department
  5. The Ohio State University, Wooster, OH (United States). School of Environment and Natural Resources, Ohio Agricultural and Research Development Center
  6. Brookhaven National Lab. (BNL), Upton, NY (United States). Environmental & Climate Sciences Department
Publication Date:
Research Org.:
Brookhaven National Laboratory (BNL), Upton, NY (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1336038
Alternate Identifier(s):
OSTI ID: 1359826
Report Number(s):
BNL-112192-2016-JA
Journal ID: ISSN 0034-4257; R&D Project: 2016-BNL-EE630EECA-Budg; KP1701000
Grant/Contract Number:  
SC00112704; SC0006951
Resource Type:
Accepted Manuscript
Journal Name:
Remote Sensing of Environment
Additional Journal Information:
Journal Volume: 179; Journal ID: ISSN 0034-4257
Publisher:
Elsevier
Country of Publication:
United States
Language:
English
Subject:
54 ENVIRONMENTAL SCIENCES; Phenology; Leaf physiology; Foliar chemistry; Carbon cycle; Chlorophyll; Carotenoids; Nitrogen; Leaf mass per area; Partial least square regression (PLSR); Sun and shaded leaves

Citation Formats

Yang, Xi, Tang, Jianwu, Mustard, John F., Wu, Jin, Zhao, Kaiguang, Serbin, Shawn, and Lee, Jung-Eun. Seasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests. United States: N. p., 2016. Web. doi:10.1016/j.rse.2016.03.026.
Yang, Xi, Tang, Jianwu, Mustard, John F., Wu, Jin, Zhao, Kaiguang, Serbin, Shawn, & Lee, Jung-Eun. Seasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests. United States. https://doi.org/10.1016/j.rse.2016.03.026
Yang, Xi, Tang, Jianwu, Mustard, John F., Wu, Jin, Zhao, Kaiguang, Serbin, Shawn, and Lee, Jung-Eun. Sat . "Seasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests". United States. https://doi.org/10.1016/j.rse.2016.03.026. https://www.osti.gov/servlets/purl/1336038.
@article{osti_1336038,
title = {Seasonal variability of multiple leaf traits captured by leaf spectroscopy at two temperate deciduous forests},
author = {Yang, Xi and Tang, Jianwu and Mustard, John F. and Wu, Jin and Zhao, Kaiguang and Serbin, Shawn and Lee, Jung-Eun},
abstractNote = {Understanding the temporal patterns of leaf traits is critical in determining the seasonality and magnitude of terrestrial carbon, water, and energy fluxes. However, we lack robust and efficient ways to monitor the temporal dynamics of leaf traits. Here we assessed the potential of leaf spectroscopy to predict and monitor leaf traits across their entire life cycle at different forest sites and light environments (sunlit vs. shaded) using a weekly sampled dataset across the entire growing season at two temperate deciduous forests. In addition, the dataset includes field measured leaf-level directional-hemispherical reflectance/transmittance together with seven important leaf traits [total chlorophyll (chlorophyll a and b), carotenoids, mass-based nitrogen concentration (Nmass), mass-based carbon concentration (Cmass), and leaf mass per area (LMA)]. All leaf traits varied significantly throughout the growing season, and displayed trait-specific temporal patterns. We used a Partial Least Square Regression (PLSR) modeling approach to estimate leaf traits from spectra, and found that PLSR was able to capture the variability across time, sites, and light environments of all leaf traits investigated (R2 = 0.6–0.8 for temporal variability; R2 = 0.3–0.7 for cross-site variability; R2 = 0.4–0.8 for variability from light environments). We also tested alternative field sampling designs and found that for most leaf traits, biweekly leaf sampling throughout the growing season enabled accurate characterization of the seasonal patterns. Compared with the estimation of foliar pigments, the performance of Nmass, Cmass and LMA PLSR models improved more significantly with sampling frequency. Our results demonstrate that leaf spectra-trait relationships vary with time, and thus tracking the seasonality of leaf traits requires statistical models calibrated with data sampled throughout the growing season. In conclusion, our results have broad implications for future research that use vegetation spectra to infer leaf traits at different growing stages.},
doi = {10.1016/j.rse.2016.03.026},
journal = {Remote Sensing of Environment},
number = ,
volume = 179,
place = {United States},
year = {Sat Apr 02 00:00:00 EDT 2016},
month = {Sat Apr 02 00:00:00 EDT 2016}
}

Journal Article:

Citation Metrics:
Cited by: 75 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Retrieving seasonal variation in chlorophyll content of overstory and understory sugar maple leaves from leaf-level hyperspectral data
journal, October 2007

  • Zhang, Yongqin; Chen, Jing M.; Thomas, Sean C.
  • Canadian Journal of Remote Sensing, Vol. 33, Issue 5
  • DOI: 10.5589/m07-037

Why are Sun Leaves Thicker than Shade Leaves? — Consideration based on Analyses of CO2 Diffusion in the Leaf
journal, March 2001

  • Terashima, Ichiro; Miyazawa, Shin-Ichi; Hanba, Yuko T.
  • Journal of Plant Research, Vol. 114, Issue 1
  • DOI: 10.1007/PL00013972

A simple filtered photodiode instrument for continuous measurement of narrowband NDVI and PRI over vegetated canopies
journal, March 2010


Photosynthesis and resource distribution through plant canopies
journal, September 2007


Using Imaging Spectroscopy to Study Ecosystem Processes and Properties
journal, January 2004


Spectroscopic sensitivity of real-time, rapidly induced phytochemical change in response to damage
journal, February 2013

  • Couture, John J.; Serbin, Shawn P.; Townsend, Philip A.
  • New Phytologist, Vol. 198, Issue 1
  • DOI: 10.1111/nph.12159

Detection of foliage conditions and disturbance from multi-angular high spectral resolution remote sensing
journal, February 2009

  • Hilker, Thomas; Coops, Nicholas C.; Coggins, Samuel B.
  • Remote Sensing of Environment, Vol. 113, Issue 2
  • DOI: 10.1016/j.rse.2008.10.003

Remote analysis of biological invasion and biogeochemical change
journal, March 2005

  • Asner, G. P.; Vitousek, P. M.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 12
  • DOI: 10.1073/pnas.0500823102

Canopy structure and vertical patterns of photosynthesis and related leaf traits in a deciduous forest
journal, November 1993


Cultural, environmental and historical controls of vegetation patterns and the modern conservation setting on the island of Martha's Vineyard, USA
journal, October 2002


Seasonality and phenology alter functional leaf traits
journal, December 2012


Yellow flowers can decrease NDVI and EVI values: evidence from a field experiment in an alpine meadow
journal, January 2009

  • Shen, Miaogen; Chen, Jin; Zhu, Xiaolin
  • Canadian Journal of Remote Sensing, Vol. 35, Issue 2
  • DOI: 10.5589/m09-003

A review of variable selection methods in Partial Least Squares Regression
journal, August 2012


Spectroscopic determination of leaf morphological and biochemical traits for northern temperate and boreal tree species
journal, October 2014

  • Serbin, Shawn P.; Singh, Aditya; McNeil, Brenden E.
  • Ecological Applications, Vol. 24, Issue 7
  • DOI: 10.1890/13-2110.1

The worldwide leaf economics spectrum
journal, April 2004

  • Wright, Ian J.; Reich, Peter B.; Westoby, Mark
  • Nature, Vol. 428, Issue 6985
  • DOI: 10.1038/nature02403

Computer Aided Design of Experiments
journal, February 1969


Leaf development and demography explain photosynthetic seasonality in Amazon evergreen forests
journal, February 2016


PROSPECT: A model of leaf optical properties spectra
journal, November 1990


Monitoring plant condition and phenology using infrared sensitive consumer grade digital cameras
journal, January 2014


Photosynthesis and nitrogen relationships in leaves of C3 plants
journal, January 1989


An introduction to the NASA Hyperspectral InfraRed Imager (HyspIRI) mission and preparatory activities
journal, September 2015


NIH Image to ImageJ: 25 years of image analysis
journal, June 2012

  • Schneider, Caroline A.; Rasband, Wayne S.; Eliceiri, Kevin W.
  • Nature Methods, Vol. 9, Issue 7
  • DOI: 10.1038/nmeth.2089

Leaf chemical and spectral diversity in Australian tropical forests
journal, January 2009

  • Asner, Gregory P.; Martin, Roberta E.; Ford, Andrew J.
  • Ecological Applications, Vol. 19, Issue 1
  • DOI: 10.1890/08-0023.1

Observing terrestrial ecosystems and the carbon cycle from space
journal, February 2015

  • Schimel, David; Pavlick, Ryan; Fisher, Joshua B.
  • Global Change Biology, Vol. 21, Issue 5
  • DOI: 10.1111/gcb.12822

A new, Automated, Multiangular Radiometer Instrument for Tower-Based Observations of Canopy Reflectance (Amspec ii)
journal, August 2010


Retrieval of foliar information about plant pigment systems from high resolution spectroscopy
journal, September 2009

  • Ustin, Susan L.; Gitelson, A. A.; Jacquemoud, Stéphane
  • Remote Sensing of Environment, Vol. 113
  • DOI: 10.1016/j.rse.2008.10.019

Characterizing canopy biochemistry from imaging spectroscopy and its application to ecosystem studies
journal, September 2009

  • Kokaly, Raymond F.; Asner, Gregory P.; Ollinger, Scott V.
  • Remote Sensing of Environment, Vol. 113
  • DOI: 10.1016/j.rse.2008.10.018

PLS-regression: a basic tool of chemometrics
journal, October 2001

  • Wold, Svante; Sjöström, Michael; Eriksson, Lennart
  • Chemometrics and Intelligent Laboratory Systems, Vol. 58, Issue 2
  • DOI: 10.1016/S0169-7439(01)00155-1

Hyperspectral remote sensing of plant biochemistry using Bayesian model averaging with variable and band selection
journal, May 2013


Comparative Relationships between Some Red Edge Parameters and Seasonal Leaf Chlorophyll Concentrations
journal, March 1995


Leaf life span and nutrient resorption as determinants of plant nutrient conservation in temperate-arctic regions
journal, July 1999


TRY - a global database of plant traits: TRY - A GLOBAL DATABASE OF PLANT TRAITS
journal, June 2011


Variation in foliar nitrogen and albedo in response to nitrogen fertilization and elevated CO2
journal, February 2012


Optimizing spectral indices and chemometric analysis of leaf chemical properties using radiative transfer modeling
journal, October 2011

  • Féret, Jean-Baptiste; François, Christophe; Gitelson, Anatoly
  • Remote Sensing of Environment, Vol. 115, Issue 10
  • DOI: 10.1016/j.rse.2011.06.016

Causes and consequences of variation in leaf mass per area (LMA): a meta‐analysis
journal, April 2009


Remote sensing of foliar chemistry
journal, December 1989


Spectral and chemical analysis of tropical forests: Scaling from leaf to canopy levels
journal, October 2008


Reconciling leaf physiological traits and canopy flux data: Use of the TRY and FLUXNET databases in the Community Land Model version 4: COMMUNITY LAND MODEL CANOPY SCALING
journal, June 2012

  • Bonan, Gordon B.; Oleson, Keith W.; Fisher, Rosie A.
  • Journal of Geophysical Research: Biogeosciences, Vol. 117, Issue G2
  • DOI: 10.1029/2011JG001913

Regional-scale phenology modeling based on meteorological records and remote sensing observations: REGIONAL PHENOLOGY MODELING
journal, September 2012

  • Yang, Xi; Mustard, John F.; Tang, Jianwu
  • Journal of Geophysical Research: Biogeosciences, Vol. 117, Issue G3
  • DOI: 10.1029/2012JG001977

Testing the performance of a novel spectral reflectance sensor, built with light emitting diodes (LEDs), to monitor ecosystem metabolism, structure and function
journal, December 2010


Photoperiodic regulation of the seasonal pattern of photosynthetic capacity and the implications for carbon cycling
journal, May 2012

  • Bauerle, W. L.; Oren, R.; Way, D. A.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 22
  • DOI: 10.1073/pnas.1119131109

Spatial and seasonal variability of photosynthetic parameters and their relationship to leaf nitrogen in a deciduous forest
journal, May 2000


The EnMAP Spaceborne Imaging Spectroscopy Mission for Earth Observation
journal, July 2015

  • Guanter, Luis; Kaufmann, Hermann; Segl, Karl
  • Remote Sensing, Vol. 7, Issue 7
  • DOI: 10.3390/rs70708830

Cross-scalar satellite phenology from ground, Landsat, and MODIS data
journal, August 2007


Death from drought in tropical forests is triggered by hydraulics not carbon starvation
journal, November 2015

  • Rowland, L.; da Costa, A. C. L.; Galbraith, D. R.
  • Nature, Vol. 528, Issue 7580
  • DOI: 10.1038/nature15539

An evaluation of noninvasive methods to estimate foliar chlorophyll content
journal, January 2002


Leaf age and seasonal effects on light, water, and nitrogen use efficiency in a California shrub
journal, February 1983


Net Exchange of CO2 in a Mid-Latitude Forest
journal, May 1993


Synergies between VSWIR and TIR data for the urban environment: An evaluation of the potential for the Hyperspectral Infrared Imager (HyspIRI) Decadal Survey mission
journal, February 2012

  • Roberts, Dar A.; Quattrochi, Dale A.; Hulley, Glynn C.
  • Remote Sensing of Environment, Vol. 117
  • DOI: 10.1016/j.rse.2011.07.021

Mechanistic scaling of ecosystem function and dynamics in space and time: Ecosystem Demography model version 2
journal, January 2009

  • Medvigy, D.; Wofsy, S. C.; Munger, J. W.
  • Journal of Geophysical Research, Vol. 114, Issue G1
  • DOI: 10.1029/2008JG000812

Harvesting sunlight safely
journal, January 2000

  • Demmig-Adams, Barbara; Adams, William W.
  • Nature, Vol. 403, Issue 6768
  • DOI: 10.1038/35000315

Effects of seasonal variation of photosynthetic capacity on the carbon fluxes of a temperate deciduous forest: SEASONALITY OF PHOTOSYNTHETIC CAPACITY
journal, December 2013

  • Medvigy, David; Jeong, Su-Jong; Clark, Kenneth L.
  • Journal of Geophysical Research: Biogeosciences, Vol. 118, Issue 4
  • DOI: 10.1002/2013JG002421

Works referencing / citing this record:

FluoSpec 2—An Automated Field Spectroscopy System to Monitor Canopy Solar-Induced Fluorescence
journal, June 2018

  • Yang, Xi; Shi, Hanyu; Stovall, Atticus
  • Sensors, Vol. 18, Issue 7
  • DOI: 10.3390/s18072063

Visible and near-infrared hyperspectral indices explain more variation in lower-crown leaf nitrogen concentrations in autumn than in summer
journal, November 2019


Field crop phenomics: enabling breeding for radiation use efficiency and biomass in cereal crops
journal, April 2019

  • Furbank, Robert T.; Jimenez‐Berni, Jose A.; George‐Jaeggli, Barbara
  • New Phytologist, Vol. 223, Issue 4
  • DOI: 10.1111/nph.15817

Hyperspectral Measurement of Seasonal Variation in the Coverage and Impacts of an Invasive Grass in an Experimental Setting
journal, May 2018

  • Guo, Yuxi; Graves, Sarah; Flory, S.
  • Remote Sensing, Vol. 10, Issue 5
  • DOI: 10.3390/rs10050784

From the Arctic to the tropics: multibiome prediction of leaf mass per area using leaf reflectance
journal, September 2019

  • Serbin, Shawn P.; Wu, Jin; Ely, Kim S.
  • New Phytologist, Vol. 224, Issue 4
  • DOI: 10.1111/nph.16123

Evaluation of Sensor and Environmental Factors Impacting the Use of Multiple Sensor Data for Time-Series Applications
journal, October 2018

  • Rengarajan, Rajagopalan; Schott, John
  • Remote Sensing, Vol. 10, Issue 11
  • DOI: 10.3390/rs10111678

Hyperspectral reflectance as a tool to measure biochemical and physiological traits in wheat
journal, December 2017

  • Silva-Perez, Viridiana; Molero, Gemma; Serbin, Shawn P.
  • Journal of Experimental Botany, Vol. 69, Issue 3
  • DOI: 10.1093/jxb/erx421

Assessing durum wheat ear and leaf metabolomes in the field through hyperspectral data
journal, January 2020

  • Vergara‐Diaz, Omar; Vatter, Thomas; Kefauver, Shawn Carlisle
  • The Plant Journal, Vol. 102, Issue 3
  • DOI: 10.1111/tpj.14636

A roadmap for improving the representation of photosynthesis in Earth system models
journal, November 2016

  • Rogers, Alistair; Medlyn, Belinda E.; Dukes, Jeffrey S.
  • New Phytologist, Vol. 213, Issue 1
  • DOI: 10.1111/nph.14283

Seasonal responses of photosynthetic parameters in maize and sunflower and their relationship with leaf functional traits
journal, January 2019

  • Miner, Grace L.; Bauerle, William L.
  • Plant, Cell & Environment, Vol. 42, Issue 5
  • DOI: 10.1111/pce.13511

Biomimetic Material Simulating Solar Spectrum Reflection Characteristics of Yellow Leaf
journal, July 2018