skip to main content
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: 50 years of Arabidopsis research: highlights and future directions

Abstract

The year 2014 marked the 25th International Conference on Arabidopsis Research. In the 50 yr since the first International Conference on Arabidopsis Research, held in 1965 in Göttingen, Germany, > 54 000 papers that mention Arabidopsis thaliana in the title, abstract or keywords have been published. In this paper, we present herein a citational network analysis of these papers, and touch on some of the important discoveries in plant biology that have been made in this powerful model system, and highlight how these discoveries have then had an impact in crop species. We also look to the future, highlighting some outstanding questions that can be readily addressed in Arabidopsis. Topics that are discussed include Arabidopsis reverse genetic resources, stock centers, databases and online tools, cell biology, development, hormones, plant immunity, signaling in response to abiotic stress, transporters, biosynthesis of cells walls and macromolecules such as starch and lipids, epigenetics and epigenomics, genome-wide association studies and natural variation, gene regulatory networks, modeling and systems biology, and synthetic biology.

Authors:
 [1];  [2];  [3];  [4];  [5];  [6];  [7];  [8];  [9];  [10];  [11];  [12];  [13];  [12];  [14];  [15];  [16];  [17];  [18];  [19] more »;  [20];  [21];  [16];  [1];  [22];  [1] « less
  1. Univ. of Toronto, ON (Canada). Department of Cell & Systems Biology/CAGEF
  2. North Carolina State Univ., Raleigh, NC (United States). Department of Plant and Microbial Biology
  3. Pennsylvania State Univ., University Park, PA (United States). Department of Biology
  4. Stanford Univ., CA (United States). Department of Biology
  5. Univ. of California, Davis, CA (United States). Department of Plant Biology
  6. The Ohio State Univ., Columbus, OH (United States). Arabidopsis Biological Resource Center
  7. Washington State Univ., Pullman, WA (United States). Institute of Biological Chemistry
  8. Purdue Univ., West Lafayette, IN (United States). Department of Biochemistry
  9. Biologie Moleculaire des Organismes Photosynthetiques, Paris (France). Departement de Biologie Ecole Normale Superieure
  10. Univ. of California, Riverside, CA (United States). Department of Botany and Plant Sciences
  11. Univ. of North Carolina, Chapel Hill, NC (United States). Department of Biology and Howard Hughes Medical Institute
  12. Carnegie Inst. of Science, Stanford, CA (United States). Department of Plant Biology
  13. Univ. of California, Davis, CA (United States). Department of Plant Biology, Agricultural Sustainability Institute
  14. The Ohio State Univ., Columbus, OH (United States). Center for Applied Plant Science
  15. California Inst. of Technology (CalTech), Pasadena, CA (United States). Division of Biology and Biological Engineering and Howard Hughes Medical Institute
  16. Univ. of Washington, Seattle, WA (United States). Department of Biology
  17. Gregor Mendel Institute of Molecular Plant Biology, Vienna (Austria)
  18. Indiana Univ., Bloomington, IN (United States). Department of Biology
  19. Brookhaven National Lab. (BNL), Upton, NY (United States). Biology Department
  20. Univ. of California, Berkeley, CA (United States). Energy Biosciences Institute
  21. Max Planck Institute for Molecular Plant Physiology, Potsdam (Germany). Metabolic Networks Department
  22. Univ. of Pennsylvania, Philadelphia, PA (United States). Department of Biology
Publication Date:
Research Org.:
Brookhaven National Lab. (BNL), Upton, NY (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1335407
Report Number(s):
BNL-111854-2016-JA
Journal ID: ISSN 0028-646X; R&D Project: BO-059; KC0304020
Grant/Contract Number:  
SC00112704
Resource Type:
Accepted Manuscript
Journal Name:
New Phytologist
Additional Journal Information:
Journal Volume: 209; Journal Issue: 3; Journal ID: ISSN 0028-646X
Publisher:
Wiley
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Arabidopsis; epigenetics; genome; synthetic biology; reverse genetics; signaling; development; model system

Citation Formats

Provart, Nicholas J., Alonso, Jose, Assmann, Sarah M., Bergmann, Dominique, Brady, Siobhan M., Brkljacic, Jelena, Browse, John, Chapple, Clint, Colot, Vincent, Cutler, Sean, Dangl, Jeff, Ehrhardt, David, Friesner, Joanna D., Frommer, Wolf B., Grotewold, Erich, Meyerowitz, Elliot, Nemhauser, Jennifer, Nordborg, Magnus, Pikaard, Craig, Shanklin, John, Somerville, Chris, Stitt, Mark, Torii, Keiko U., Waese, Jamie, Wagner, Doris, and McCourt, Peter. 50 years of Arabidopsis research: highlights and future directions. United States: N. p., 2015. Web. doi:10.1111/nph.13687.
Provart, Nicholas J., Alonso, Jose, Assmann, Sarah M., Bergmann, Dominique, Brady, Siobhan M., Brkljacic, Jelena, Browse, John, Chapple, Clint, Colot, Vincent, Cutler, Sean, Dangl, Jeff, Ehrhardt, David, Friesner, Joanna D., Frommer, Wolf B., Grotewold, Erich, Meyerowitz, Elliot, Nemhauser, Jennifer, Nordborg, Magnus, Pikaard, Craig, Shanklin, John, Somerville, Chris, Stitt, Mark, Torii, Keiko U., Waese, Jamie, Wagner, Doris, & McCourt, Peter. 50 years of Arabidopsis research: highlights and future directions. United States. doi:10.1111/nph.13687.
Provart, Nicholas J., Alonso, Jose, Assmann, Sarah M., Bergmann, Dominique, Brady, Siobhan M., Brkljacic, Jelena, Browse, John, Chapple, Clint, Colot, Vincent, Cutler, Sean, Dangl, Jeff, Ehrhardt, David, Friesner, Joanna D., Frommer, Wolf B., Grotewold, Erich, Meyerowitz, Elliot, Nemhauser, Jennifer, Nordborg, Magnus, Pikaard, Craig, Shanklin, John, Somerville, Chris, Stitt, Mark, Torii, Keiko U., Waese, Jamie, Wagner, Doris, and McCourt, Peter. Wed . "50 years of Arabidopsis research: highlights and future directions". United States. doi:10.1111/nph.13687. https://www.osti.gov/servlets/purl/1335407.
@article{osti_1335407,
title = {50 years of Arabidopsis research: highlights and future directions},
author = {Provart, Nicholas J. and Alonso, Jose and Assmann, Sarah M. and Bergmann, Dominique and Brady, Siobhan M. and Brkljacic, Jelena and Browse, John and Chapple, Clint and Colot, Vincent and Cutler, Sean and Dangl, Jeff and Ehrhardt, David and Friesner, Joanna D. and Frommer, Wolf B. and Grotewold, Erich and Meyerowitz, Elliot and Nemhauser, Jennifer and Nordborg, Magnus and Pikaard, Craig and Shanklin, John and Somerville, Chris and Stitt, Mark and Torii, Keiko U. and Waese, Jamie and Wagner, Doris and McCourt, Peter},
abstractNote = {The year 2014 marked the 25th International Conference on Arabidopsis Research. In the 50 yr since the first International Conference on Arabidopsis Research, held in 1965 in Göttingen, Germany, > 54 000 papers that mention Arabidopsis thaliana in the title, abstract or keywords have been published. In this paper, we present herein a citational network analysis of these papers, and touch on some of the important discoveries in plant biology that have been made in this powerful model system, and highlight how these discoveries have then had an impact in crop species. We also look to the future, highlighting some outstanding questions that can be readily addressed in Arabidopsis. Topics that are discussed include Arabidopsis reverse genetic resources, stock centers, databases and online tools, cell biology, development, hormones, plant immunity, signaling in response to abiotic stress, transporters, biosynthesis of cells walls and macromolecules such as starch and lipids, epigenetics and epigenomics, genome-wide association studies and natural variation, gene regulatory networks, modeling and systems biology, and synthetic biology.},
doi = {10.1111/nph.13687},
journal = {New Phytologist},
number = 3,
volume = 209,
place = {United States},
year = {2015},
month = {10}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 29 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Transcriptome Dynamics of the Stomatal Lineage: Birth, Amplification, and Termination of a Self-Renewing Population
journal, April 2015


HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor
journal, November 1993

  • Ahmad, Margaret; Cashmore, Anthony R.
  • Nature, Vol. 366, Issue 6451
  • DOI: 10.1038/366162a0

CHD3 Proteins and Polycomb Group Proteins Antagonistically Determine Cell Identity in Arabidopsis
journal, August 2009


Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis
journal, June 2006

  • Alonso, Jose M.; Ecker, Joseph R.
  • Nature Reviews Genetics, Vol. 7, Issue 7
  • DOI: 10.1038/nrg1893

Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana
journal, August 2003

  • Alonso, J. M.; Stepanova, Anna N.; Leisse, Thomas J.
  • Science, Vol. 301, Issue 5633, p. 653-657
  • DOI: 10.1126/science.1086391

What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation?
journal, July 2009

  • Alonso-Blanco, Carlos; Aarts, Mark G. M.; Bentsink, Leonie
  • The Plant Cell, Vol. 21, Issue 7
  • DOI: 10.1105/tpc.109.068114

Establishment of a gene tagging system in Arabidopsis thaliana based on the maize transposable element Ac
journal, July 1992

  • Altmann, T.; Schmidt, R.; Willmitzer, L.
  • Theoretical and Applied Genetics, Vol. 84-84, Issue 3-4
  • DOI: 10.1007/BF00229496

A CLASP-modulated cell edge barrier mechanism drives cell-wide cortical microtubule organization in Arabidopsis
journal, August 2011

  • Ambrose, Chris; Allard, Jun F.; Cytrynbaum, Eric N.
  • Nature Communications, Vol. 2, Issue 1
  • DOI: 10.1038/ncomms1444

Functional expression of a probable Arabidopsis thaliana potassium channel in Saccharomyces cerevisiae.
journal, May 1992

  • Anderson, J. A.; Huprikar, S. S.; Kochian, L. V.
  • Proceedings of the National Academy of Sciences, Vol. 89, Issue 9
  • DOI: 10.1073/pnas.89.9.3736

Targeted DNA excision in Arabidopsis by a re-engineered homing endonuclease
journal, January 2012

  • Antunes, Mauricio S.; Smith, J. Jeff; Jantz, Derek
  • BMC Biotechnology, Vol. 12, Issue 1
  • DOI: 10.1186/1472-6750-12-86

Molecular Analysis of Cellulose Biosynthesis in Arabidopsis
journal, January 1998


Gene Ontology: tool for the unification of biology
journal, May 2000

  • Ashburner, Michael; Ball, Catherine A.; Blake, Judith A.
  • Nature Genetics, Vol. 25, Issue 1
  • DOI: 10.1038/75556

Natural Variation in Abiotic Stress and Climate Change Responses in Arabidopsis : Implications for Twenty-First-Century Agriculture
journal, January 2013

  • Assmann, Sarah M.
  • International Journal of Plant Sciences, Vol. 174, Issue 1
  • DOI: 10.1086/667798

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
journal, March 2010

  • Atwell, Susanna; Huang, Yu S.; Vilhjálmsson, Bjarni J.
  • Nature, Vol. 465, Issue 7298
  • DOI: 10.1038/nature08800

Next-generation mapping of Arabidopsis genes: Next-generation mapping of Arabidopsis genes
journal, July 2011


Development of an efficient two-element transposon tagging system in Arabidopsis thaliana
journal, June 1992

  • Bancroft, Ian; Bhatt, Anuj M.; Sjodin, Christina
  • Molecular and General Genetics MGG, Vol. 233, Issue 3
  • DOI: 10.1007/BF00265443

A Unified Model of Shoot Tropism in Plants: Photo-, Gravi- and Propio-ception
journal, February 2015


Vernalization requires epigenetic silencing of FLC by histone methylation
journal, January 2004

  • Bastow, Ruth; Mylne, Joshua S.; Lister, Clare
  • Nature, Vol. 427, Issue 6970
  • DOI: 10.1038/nature02269

Physiological and developmental regulation of seed oil production
journal, July 2010


A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1
journal, November 2010


In vivo genome editing using a high-efficiency TALEN system
journal, September 2012

  • Bedell, Victoria M.; Wang, Ying; Campbell, Jarryd M.
  • Nature, Vol. 491, Issue 7422
  • DOI: 10.1038/nature11537

The growth–defense pivot: crisis management in plants mediated by LRR-RK surface receptors
journal, October 2014

  • Belkhadir, Youssef; Yang, Li; Hetzel, Jonathan
  • Trends in Biochemical Sciences, Vol. 39, Issue 10
  • DOI: 10.1016/j.tibs.2014.06.006

Arabidopsis AUX1 Gene: A Permease-Like Regulator of Root Gravitropism
journal, August 1996


RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes
journal, September 1994


Mendel's Laws of Inheritance and Wheat Breeding
journal, January 1905


A Gene Expression Map of the Arabidopsis Root
journal, December 2003


Insensitivity to Ethylene Conferred by a Dominant Mutation in Arabidopsis thaliana
journal, August 1988


Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant
journal, March 2014

  • Bonawitz, Nicholas D.; Kim, Jeong Im; Tobimatsu, Yuki
  • Nature, Vol. 509, Issue 7500, p. 376-380
  • DOI: 10.1038/nature13084

A Reversible Photoreaction Controlling Seed Germination
journal, August 1952

  • Borthwick, H. A.; Hendricks, S. B.; Parker, M. W.
  • Proceedings of the National Academy of Sciences, Vol. 38, Issue 8
  • DOI: 10.1073/pnas.38.8.662

Molecular cloning of a family of plant genes encoding a protein homologous to plasma membrane H+-translocating ATPases
journal, July 1989

  • Boutry, Marc; Michelet, Baudouin; Goffeau, André
  • Biochemical and Biophysical Research Communications, Vol. 162, Issue 2
  • DOI: 10.1016/0006-291X(89)92348-6

A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns
journal, November 2007


Web-Queryable Large-Scale Data Sets for Hypothesis Generation in Plant Biology
journal, April 2009


Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana
journal, December 2008


Phototropism: Some History, Some Puzzles, and a Look Ahead
journal, January 2014


Brachypodium as a Model for the Grasses: Today and the Future
journal, July 2011

  • Brkljacic, Jelena; Grotewold, Erich; Scholl, Randy
  • Plant Physiology, Vol. 157, Issue 1
  • DOI: 10.1104/pp.111.179531

Structure and Functions of the Bacterial Microbiota of Plants
journal, April 2013


Characterization of an Arabidopsis Mutant That Is Nonresponsive to Inducers of Systemic Acquired Resistance.
journal, November 1994


Whole-genome sequencing of multiple Arabidopsis thaliana populations
journal, August 2011

  • Cao, Jun; Schneeberger, Korbinian; Ossowski, Stephan
  • Nature Genetics, Vol. 43, Issue 10
  • DOI: 10.1038/ng.911

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
journal, April 2010

  • Carlsbecker, Annelie; Lee, Ji-Young; Roberts, Christina J.
  • Nature, Vol. 465, Issue 7296
  • DOI: 10.1038/nature08977

Reconstructing spatiotemporal gene expression data from partial observations
journal, July 2009


Extra-Large G Proteins Expand the Repertoire of Subunits in Arabidopsis Heterotrimeric G Protein Signaling
journal, July 2015

  • Chakravorty, David; Gookin, Timothy E.; Milner, Matthew J.
  • Plant Physiology, Vol. 169, Issue 1
  • DOI: 10.1104/pp.15.00251

Arabidopsis ethylene-response gene ETR1: similarity of product to two-component regulators
journal, October 1993


Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
journal, June 2013

  • Chang, Katherine Noelani; Zhong, Shan; Weirauch, Matthew T.
  • eLife, Vol. 2
  • DOI: 10.7554/eLife.00675

A Cascade of Sequentially Expressed Sucrose Transporters in the Seed Coat and Endosperm Provides Nutrition for the Arabidopsis Embryo
journal, March 2015


Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport
journal, December 2011


Sugar transporters for intercellular exchange and nutrition of pathogens
journal, November 2010

  • Chen, Li-Qing; Hou, Bi-Huei; Lalonde, Sylvie
  • Nature, Vol. 468, Issue 7323
  • DOI: 10.1038/nature09606

Multiscale digital Arabidopsis predicts individual organ and whole-organism growth
journal, September 2014

  • Chew, Yin Hoon; Wenden, Bénédicte; Flis, Anna
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 39
  • DOI: 10.1073/pnas.1410238111

Epigenetic regulation of stress responses in plants
journal, April 2009


DEMETER, a DNA Glycosylase Domain Protein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis
journal, July 2002


Arabidopsis NPH1: A Flavoprotein with the Properties of a Photoreceptor for Phototropism
journal, November 1998


Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
journal, July 2007


Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
journal, December 1998


The war of the whorls: genetic interactions controlling flower development
journal, September 1991

  • Coen, Enrico S.; Meyerowitz, Elliot M.
  • Nature, Vol. 353, Issue 6339
  • DOI: 10.1038/353031a0

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
journal, February 2008

  • Cokus, Shawn J.; Feng, Suhua; Zhang, Xiaoyu
  • Nature, Vol. 452, Issue 7184
  • DOI: 10.1038/nature06745

FT Protein Movement Contributes to Long-Distance Signaling in Floral Induction of Arabidopsis
journal, May 2007


Control of Starch Granule Numbers in Arabidopsis Chloroplasts
journal, December 2011

  • Crumpton-Taylor, Matilda; Grandison, Scott; Png, Kenneth M. Y.
  • Plant Physiology, Vol. 158, Issue 2
  • DOI: 10.1104/pp.111.186957

A Bistable Circuit Involving SCARECROW-RETINOBLASTOMA Integrates Cues to Inform Asymmetric Stem Cell Division
journal, August 2012


Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency
journal, March 2000

  • Cutler, S. R.; Ehrhardt, D. W.; Griffitts, J. S.
  • Proceedings of the National Academy of Sciences, Vol. 97, Issue 7
  • DOI: 10.1073/pnas.97.7.3718

Abscisic Acid: Emergence of a Core Signaling Network
journal, June 2010


Plant pathogens and integrated defence responses to infection
journal, June 2001

  • Dangl, Jeffery L.; Jones, Jonathan D. G.
  • Nature, Vol. 411, Issue 6839
  • DOI: 10.1038/35081161

Modelling the role of microtubules in plant cell morphology
journal, December 2013


The F-box protein TIR1 is an auxin receptor
journal, May 2005

  • Dharmasiri, Nihal; Dharmasiri, Sunethra; Estelle, Mark
  • Nature, Vol. 435, Issue 7041
  • DOI: 10.1038/nature03543

The DELLA motif is essential for gibberellin-induced degradation of RGA
journal, November 2001

  • Dill, A.; Jung, H. -S.; Sun, T. -p.
  • Proceedings of the National Academy of Sciences, Vol. 98, Issue 24
  • DOI: 10.1073/pnas.251534098

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
journal, November 2013

  • Ding, Yiliang; Tang, Yin; Kwok, Chun Kit
  • Nature, Vol. 505, Issue 7485
  • DOI: 10.1038/nature12756

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress
journal, May 2008


Revealing Shared and Distinct Gene Network Organization in Arabidopsis Immune Responses by Integrative Analysis
journal, January 2015

  • Dong, Xiaobao; Jiang, Zhenhong; Peng, You-Liang
  • Plant Physiology, Vol. 167, Issue 3
  • DOI: 10.1104/pp.114.254292

BASL Controls Asymmetric Cell Division in Arabidopsis
journal, June 2009


Evidence for Network Evolution in an Arabidopsis Interactome Map
journal, July 2011


DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
journal, May 2015


Quantification of cell identity from single-cell gene expression profiles
journal, January 2015


A novel iron-regulated metal transporter from plants identified by functional expression in yeast.
journal, May 1996

  • Eide, D.; Broderius, M.; Fett, J.
  • Proceedings of the National Academy of Sciences, Vol. 93, Issue 11
  • DOI: 10.1073/pnas.93.11.5624

SWEETs, transporters for intracellular and intercellular sugar translocation
journal, June 2015


Agrobacterium-mediated transformation of germinating seeds of Arabidopsis thaliana: A non-tissue culture approach
journal, June 1987

  • Feldmann, Kenneth A.; David Marks, M.
  • Molecular and General Genetics MGG, Vol. 208, Issue 1-2
  • DOI: 10.1007/BF00330414

Multigeneration analysis reveals the inheritance, specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis
journal, February 2014

  • Feng, Z.; Mao, Y.; Xu, N.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 12
  • DOI: 10.1073/pnas.1400822111

The Development and Application of Optogenetics
journal, July 2011


Current Status of the Gene-For-Gene Concept
journal, September 1971


A Map of Local Adaptation in Arabidopsis thaliana
journal, October 2011


Phytochrome functions in Arabidopsis development
journal, October 2009

  • Franklin, K. A.; Quail, P. H.
  • Journal of Experimental Botany, Vol. 61, Issue 1
  • DOI: 10.1093/jxb/erp304

Expression cloning in yeast of a cDNA encoding a broad specificity amino acid permease from Arabidopsis thaliana.
journal, July 1993

  • Frommer, W. B.; Hummel, S.; Riesmeier, J. W.
  • Proceedings of the National Academy of Sciences, Vol. 90, Issue 13
  • DOI: 10.1073/pnas.90.13.5944

The TPLATE Adaptor Complex Drives Clathrin-Mediated Endocytosis in Plants
journal, February 2014


Regulation of Polar Auxin Transport by AtPIN1 in Arabidopsis Vascular Tissue
journal, December 1998


Multiple reference genomes and transcriptomes for Arabidopsis thaliana
journal, August 2011

  • Gan, Xiangchao; Stegle, Oliver; Behr, Jonas
  • Nature, Vol. 477, Issue 7365
  • DOI: 10.1038/nature10414

A Predicted Interactome for Arabidopsis
journal, August 2007

  • Geisler-Lee, Jane; O'Toole, Nicholas; Ammar, Ron
  • Plant Physiology, Vol. 145, Issue 2
  • DOI: 10.1104/pp.107.103465

Use of Arabidopsis for Genetic Dissection of Plant Defense Responses
journal, December 1997


Fls2
journal, June 2000


ROS1, a Repressor of Transcriptional Gene Silencing in Arabidopsis, Encodes a DNA Glycosylase/Lyase
journal, December 2002


A Polycomb-group gene regulates homeotic gene expression in Arabidopsis
journal, March 1997

  • Goodrich, Justin; Puangsomlee, Preeya; Martin, Marta
  • Nature, Vol. 386, Issue 6620
  • DOI: 10.1038/386044a0

Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance
journal, August 1995


Auxin-induced degradation dynamics set the pace for lateral root development
journal, January 2015

  • Guseman, J. M.; Hellmuth, A.; Lanctot, A.
  • Development, Vol. 142, Issue 5
  • DOI: 10.1242/dev.117234

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1
journal, March 2008

  • Gutierrez, R. A.; Stokes, T. L.; Thum, K.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 12
  • DOI: 10.1073/pnas.0800211105

Exploiting the triple response of Arabidopsis to identify ethylene-related mutants.
journal, June 1990


Adaptation to Climate Across the Arabidopsis thaliana Genome
journal, October 2011


Molecular cloning and sequence of cDNA encoding the plasma membrane proton pump (H+-ATPase) of Arabidopsis thaliana.
journal, February 1989

  • Harper, J. F.; Surowy, T. K.; Sussman, M. R.
  • Proceedings of the National Academy of Sciences, Vol. 86, Issue 4
  • DOI: 10.1073/pnas.86.4.1234

Principles for the Buffering of Genetic Variation
journal, February 2001


A Synthetic Approach Reveals Extensive Tunability of Auxin Signaling
journal, July 2012

  • Havens, Kyle A.; Guseman, Jessica M.; Jang, Seunghee S.
  • Plant Physiology, Vol. 160, Issue 1
  • DOI: 10.1104/pp.112.202184

Epigenetic inheritance in plants
journal, May 2007


Flowering Locus C’s Lessons: Conserved Chromatin Switches Underpinning Developmental Timing and Adaptation
journal, July 2015


Analysis of cloned cDNA and genomic sequences for phaytochrome: complete amino acid sequences for two gene products expressed in etiolated Avena
journal, January 1985

  • Hershey, Howard P.; Barker, Richard F.; Idler, Kenneth B.
  • Nucleic Acids Research, Vol. 13, Issue 23
  • DOI: 10.1093/nar/13.23.8543

A Functional and Evolutionary Perspective on Transcription Factor Binding in Arabidopsis thaliana
journal, October 2014

  • Heyndrickx, Ken S.; de Velde, Jan Van; Wang, Congmao
  • The Plant Cell, Vol. 26, Issue 10
  • DOI: 10.1105/tpc.114.130591

Small Molecules Present Large Opportunities in Plant Biology
journal, June 2012


Root Systems Biology: Integrative Modeling across Scales, from Gene Regulatory Networks to the Rhizosphere
journal, October 2013


CHL1 Functions as a Nitrate Sensor in Plants
journal, September 2009


Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel
journal, January 2012

  • Horton, Matthew W.; Hancock, Angela M.; Huang, Yu S.
  • Nature Genetics, Vol. 44, Issue 2
  • DOI: 10.1038/ng.1042

Cloning a plant amino acid transporter by functional complementation of a yeast amino acid transport mutant.
journal, August 1993

  • Hsu, L. C.; Chiou, T. J.; Chen, L.
  • Proceedings of the National Academy of Sciences, Vol. 90, Issue 16
  • DOI: 10.1073/pnas.90.16.7441

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm
journal, December 2011

  • Huang, Xuehui; Zhao, Yan; Wei, Xinghua
  • Nature Genetics, Vol. 44, Issue 1
  • DOI: 10.1038/ng.1018

Identification of CRE1 as a cytokinin receptor from Arabidopsis
journal, February 2001

  • Inoue, Tsutomu; Higuchi, Masayuki; Hashimoto, Yukari
  • Nature, Vol. 409, Issue 6823
  • DOI: 10.1038/35059117

Epigenetic memory in plants
journal, July 2014


Interlocking Feedback Loops Govern the Dynamic Behavior of the Floral Transition in Arabidopsis
journal, March 2013


The SRA Methyl-Cytosine-Binding Domain Links DNA and Histone Methylation
journal, February 2007


The Impact of Arabidopsis on Human Health: Diversifying Our Portfolio
journal, June 2008


The plant immune system
journal, November 2006

  • Jones, Jonathan D. G.; Dangl, Jeffery L.
  • Nature, Vol. 444, Issue 7117
  • DOI: 10.1038/nature05286

Identification of the transporter responsible for sucrose accumulation in sugar beet taproots
journal, January 2015

  • Jung, Benjamin; Ludewig, Frank; Schulz, Alexander
  • Nature Plants, Vol. 1, Issue 1
  • DOI: 10.1038/nplants.2014.1

The long-term maintenance of a resistance polymorphism through diffuse interactions
journal, July 2014

  • Karasov, Talia L.; Kniskern, Joel M.; Gao, Liping
  • Nature, Vol. 512, Issue 7515
  • DOI: 10.1038/nature13439

Peptide Signaling in Plant Development
journal, May 2011


Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower
journal, April 2009


Regulation of transcription in plants: mechanisms controlling developmental switches
journal, November 2010

  • Kaufmann, Kerstin; Pajoro, Alice; Angenent, Gerco C.
  • Nature Reviews Genetics, Vol. 11, Issue 12
  • DOI: 10.1038/nrg2885

Orchestration of Floral Initiation by APETALA1
journal, April 2010


The Arabidopsis F-box protein TIR1 is an auxin receptor
journal, May 2005


A comparison of population types used for QTL mapping in Arabidopsis thaliana
journal, March 2011

  • Keurentjes, Joost J. B.; Willems, Glenda; van Eeuwijk, Fred
  • Plant Genetic Resources, Vol. 9, Issue 2
  • DOI: 10.1017/S1479262111000086

CTR1, a negative regulator of the ethylene response pathway in arabidopsis, encodes a member of the Raf family of protein kinases
journal, February 1993


Elastic Domains Regulate Growth and Organogenesis in the Plant Shoot Apical Meristem
journal, March 2012

  • Kierzkowski, D.; Nakayama, N.; Routier-Kierzkowska, A. -L.
  • Science, Vol. 335, Issue 6072
  • DOI: 10.1126/science.1213100

ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light
journal, August 2007

  • Kim, Woe-Yeon; Fujiwara, Sumire; Suh, Sung-Suk
  • Nature, Vol. 449, Issue 7160
  • DOI: 10.1038/nature06132

Recombination and linkage disequilibrium in Arabidopsis thaliana
journal, August 2007

  • Kim, Sung; Plagnol, Vincent; Hu, Tina T.
  • Nature Genetics, Vol. 39, Issue 9
  • DOI: 10.1038/ng2115

Arabidopsis UVR8 Regulates Ultraviolet-B Signal Transduction and Tolerance and Contains Sequence Similarity to Human Regulator of Chromatin Condensation 1
journal, August 2002

  • Kliebenstein, Daniel J.; Lim, Jackie E.; Landry, Laurie G.
  • Plant Physiology, Vol. 130, Issue 1
  • DOI: 10.1104/pp.005041

Arabidopsis is susceptible to infection by a downy mildew fungus.
journal, May 1990


Galactose-Depleted Xyloglucan Is Dysfunctional and Leads to Dwarfism in Arabidopsis
journal, February 2015

  • Kong, Yingzhen; Peña, Maria J.; Renna, Luciana
  • Plant Physiology, Vol. 167, Issue 4
  • DOI: 10.1104/pp.114.255943

The development of Arabidopsis as a model plant
journal, March 2010


The isolation and characterization of abscisic acid-insensitive mutants of Arabidopsis thaliana
journal, July 1984


Genetic Control of Light-inhibited Hypocotyl Elongation in Arabidopsis thaliana (L.) Heynh
journal, November 1980


A mixed-model approach for genome-wide association studies of correlated traits in structured populations
journal, August 2012

  • Korte, Arthur; Vilhjálmsson, Bjarni J.; Segura, Vincent
  • Nature Genetics, Vol. 44, Issue 9
  • DOI: 10.1038/ng.2376

Araport: the Arabidopsis Information Portal
journal, November 2014

  • Krishnakumar, Vivek; Hanlon, Matthew R.; Contrino, Sergio
  • Nucleic Acids Research, Vol. 43, Issue D1
  • DOI: 10.1093/nar/gku1200

Identification of transferred DNA insertions within Arabidopsis genes involved in signal transduction and ion transport.
journal, July 1996

  • Krysan, P. J.; Young, J. C.; Tax, F.
  • Proceedings of the National Academy of Sciences, Vol. 93, Issue 15
  • DOI: 10.1073/pnas.93.15.8145

Auxin controls petal initiation in Arabidopsis
journal, November 2012

  • Lampugnani, E. R.; Kilinc, A.; Smyth, D. R.
  • Development, Vol. 140, Issue 1
  • DOI: 10.1242/dev.084582

Establishing, maintaining and modifying DNA methylation patterns in plants and animals
journal, February 2010

  • Law, Julie A.; Jacobsen, Steven E.
  • Nature Reviews Genetics, Vol. 11, Issue 3
  • DOI: 10.1038/nrg2719

Requirements for Arabidopsis ATARP2 and ATARP3 during Epidermal Development
journal, August 2003


A Quantitative and Dynamic Model of the Arabidopsis Flowering Time Gene Regulatory Network
journal, February 2015


Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
journal, January 2010

  • Lee, Insuk; Ambaru, Bindu; Thakkar, Pranjali
  • Nature Biotechnology, Vol. 28, Issue 2
  • DOI: 10.1038/nbt.1603

Molecular recognition of pathogen attack occurs inside of plant cells in plant disease resistance specified by the Arabidopsis genes RPS2 and RPM1
journal, December 1996

  • Leister, R. T.; Ausubel, F. M.; Katagiri, F.
  • Proceedings of the National Academy of Sciences, Vol. 93, Issue 26
  • DOI: 10.1073/pnas.93.26.15497

Predicting Essential Components of Signal Transduction Networks: A Dynamic Model of Guard Cell Abscisic Acid Signaling
journal, September 2006


A Putative Leucine-Rich Repeat Receptor Kinase Involved in Brassinosteroid Signal Transduction
journal, September 1997


Genetic Perturbation of the Maize Methylome
journal, December 2014

  • Li, Qing; Eichten, Steven R.; Hermanson, Peter J.
  • The Plant Cell, Vol. 26, Issue 12
  • DOI: 10.1105/tpc.114.133140

Control of Pollen Tube Tip Growth by a Rop GTPase–Dependent Pathway That Leads to Tip-Localized Calcium Influx
journal, September 1999


High-efficiency TALEN-based gene editing produces disease-resistant rice
journal, May 2012

  • Li, Ting; Liu, Bo; Spalding, Martin H.
  • Nature Biotechnology, Vol. 30, Issue 5
  • DOI: 10.1038/nbt.2199

Acyl-Lipid Metabolism
journal, January 2013

  • Li-Beisson, Yonghua; Shorrosh, Basil; Beisson, Fred
  • The Arabidopsis Book, Vol. 11
  • DOI: 10.1199/tab.0161

The tomato FT ortholog triggers systemic signals that regulate growth and flowering and substitute for diverse environmental stimuli
journal, April 2006

  • Lifschitz, E.; Eviatar, T.; Rozman, A.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 16
  • DOI: 10.1073/pnas.0601620103

Nectar secretion requires sucrose phosphate synthases and the sugar transporter SWEET9
journal, March 2014

  • Lin, I. Winnie; Sosso, Davide; Chen, Li-Qing
  • Nature, Vol. 508, Issue 7497
  • DOI: 10.1038/nature13082

Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3
journal, September 2004

  • Lindroth, Anders M.; Shultis, David; Jasencakova, Zuzana
  • The EMBO Journal, Vol. 23, Issue 21
  • DOI: 10.1038/sj.emboj.7600430

Role of transposable elements in heterochromatin and epigenetic control
journal, July 2004

  • Lippman, Zachary; Gendrel, Anne-Valérie; Black, Michael
  • Nature, Vol. 430, Issue 6998
  • DOI: 10.1038/nature02651

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
journal, May 2008


Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
journal, June 2013

  • Long, Quan; Rabanal, Fernando A.; Meng, Dazhe
  • Nature Genetics, Vol. 45, Issue 8
  • DOI: 10.1038/ng.2678

New frontiers in oilseed biotechnology: meeting the global demand for vegetable oils for food, feed, biofuel, and industrial applications
journal, April 2011

  • Lu, Chaofu; Napier, Johnathan A.; Clemente, Thomas E.
  • Current Opinion in Biotechnology, Vol. 22, Issue 2
  • DOI: 10.1016/j.copbio.2010.11.006

Plant Nuclear Hormone Receptors: A Role for Small Molecules in Protein-Protein Interactions
journal, November 2010


Plant sphingolipids: function follows form
journal, June 2013

  • Markham, Jonathan E.; Lynch, Daniel V.; Napier, Johnathan A.
  • Current Opinion in Plant Biology, Vol. 16, Issue 3
  • DOI: 10.1016/j.pbi.2013.02.009

Mutations in Actin-Related Proteins 2 and 3 Affect Cell Shape Development in Arabidopsis
journal, June 2003

  • Mathur, Jaideep; Mathur, Neeta; Kernebeck, Birgit
  • The Plant Cell, Vol. 15, Issue 7
  • DOI: 10.1105/tpc.011676

The significance of responses of the genome to challenge
journal, November 1984


The Cell Biology of Cellulose Synthesis
journal, April 2014


Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis
journal, November 2013

  • Meijón, Mónica; Satbhai, Santosh B.; Tsuchimatsu, Takashi
  • Nature Genetics, Vol. 46, Issue 1
  • DOI: 10.1038/ng.2824

The Preservation of Plant Genetic Resources. Experiences with Arabidopsis
journal, November 2003


From plant gene regulatory grids to network dynamics
journal, May 2012

  • Mejia-Guerra, Maria Katherine; Pomeranz, Marcelo; Morohashi, Kengo
  • Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. 1819, Issue 5
  • DOI: 10.1016/j.bbagrm.2012.02.016

Use of infrared thermal imaging to isolate Arabidopsis mutants defective in stomatal regulation
journal, June 2002


Prehistory and History of Arabidopsis Research
journal, January 2001


Arabidopsis thaliana and Plant Molecular Genetics
journal, September 1985


Fluorescent sensors reporting the activity of ammonium transceptors in live cells
journal, July 2013


The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats
journal, September 1994


Plant single-cell and single-cell-type metabolomics
journal, October 2014


Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas
journal, April 2015

  • Montenegro-Johnson, Thomas D.; Stamm, Petra; Strauss, Soeren
  • The Plant Cell, Vol. 27, Issue 4
  • DOI: 10.1105/tpc.15.00175

Omics meet networks—using systems approaches to infer regulatory networks in plants
journal, April 2010

  • Moreno-Risueno, Miguel A.; Busch, Wolfgang; Benfey, Philip N.
  • Current Opinion in Plant Biology, Vol. 13, Issue 2
  • DOI: 10.1016/j.pbi.2009.11.005

A Systems Approach Reveals Regulatory Circuitry for Arabidopsis Trichome Initiation by the GL3 and GL1 Selectors
journal, February 2009


Regulatory Properties of ADP Glucose Pyrophosphorylase Are Required for Adjustment of Leaf Starch Synthesis in Different Photoperiods
journal, October 2014

  • Mugford, Sam T.; Fernandez, Olivier; Brinton, Jemima
  • Plant Physiology, Vol. 166, Issue 4
  • DOI: 10.1104/pp.114.247759

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network
journal, July 2011


Intercellular movement of the putative transcription factor SHR in root patterning
journal, September 2001

  • Nakajima, Keiji; Sena, Giovanni; Nawy, Tal
  • Nature, Vol. 413, Issue 6853
  • DOI: 10.1038/35095061

Genetic and Genomic Toolbox of Zea mays
journal, March 2015


Metabolic Engineering of Seeds Can Achieve Levels of ω-7 Fatty Acids Comparable with the Highest Levels Found in Natural Plant Sources
journal, October 2010

  • Nguyen, Huu Tam; Mishra, Girish; Whittle, Edward
  • Plant Physiology, Vol. 154, Issue 4
  • DOI: 10.1104/pp.110.165340

Arabidopsis and the plant immune system
journal, March 2010


An auxin-based degron system for the rapid depletion of proteins in nonplant cells
journal, November 2009

  • Nishimura, Kohei; Fukagawa, Tatsuo; Takisawa, Haruhiko
  • Nature Methods, Vol. 6, Issue 12
  • DOI: 10.1038/nmeth.1401

The extent of linkage disequilibrium in Arabidopsis thaliana
journal, January 2002

  • Nordborg, Magnus; Borevitz, Justin O.; Bergelson, Joy
  • Nature Genetics, Vol. 30, Issue 2
  • DOI: 10.1038/ng813

The Pattern of Polymorphism in Arabidopsis thaliana
journal, May 2005


Quantitative Imaging with Fluorescent Biosensors
journal, June 2012


Linking genotype to phenotype using the Arabidopsis unimutant collection
journal, March 2010


Gene networks controlling Arabidopsis thaliana flower development
journal, August 2013

  • Ó'Maoiléidigh, Diarmuid Seosamh; Graciet, Emmanuelle; Wellmer, Frank
  • New Phytologist, Vol. 201, Issue 1
  • DOI: 10.1111/nph.12444

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis
journal, June 2014

  • Para, A.; Li, Y.; Marshall-Colon, A.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 28
  • DOI: 10.1073/pnas.1404657111

Agrochemical control of plant water use using engineered abscisic acid receptors
journal, February 2015

  • Park, Sang-Youl; Peterson, Francis C.; Mosquna, Assaf
  • Nature, Vol. 520, Issue 7548
  • DOI: 10.1038/nature14123

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence
journal, January 2013

  • Péret, Benjamin; Middleton, Alistair M.; French, Andrew P.
  • Molecular Systems Biology, Vol. 9, Issue 1
  • DOI: 10.1038/msb.2013.43

Recapitulation of the forward nuclear auxin response pathway in yeast
journal, June 2014

  • Pierre-Jerome, Edith; Jang, Seunghee S.; Havens, Kyle A.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 26
  • DOI: 10.1073/pnas.1324147111

Epigenetic Regulation in Plants
journal, December 2014


Mechanisms of Stomatal Development
journal, June 2012


Improving crop disease resistance: lessons from research on Arabidopsis and tomato
journal, December 2014

  • Piquerez, Sophie J. M.; Harvey, Sarah E.; Beynon, Jim L.
  • Frontiers in Plant Science, Vol. 5
  • DOI: 10.3389/fpls.2014.00671

The second wave of synthetic biology: from modules to systems
journal, June 2009

  • Purnick, Priscilla E. M.; Weiss, Ron
  • Nature Reviews Molecular Cell Biology, Vol. 10, Issue 6
  • DOI: 10.1038/nrm2698

ABA perception and signalling
journal, July 2010

  • Raghavendra, Agepati S.; Gonugunta, Vijay K.; Christmann, Alexander
  • Trends in Plant Science, Vol. 15, Issue 7
  • DOI: 10.1016/j.tplants.2010.04.006

Arabidopsis as a Genetic Tool
journal, December 1975


Targeting metabolic pathways for genetic engineering abiotic stress-tolerance in crops
journal, February 2012

  • Reguera, Maria; Peleg, Zvi; Blumwald, Eduardo
  • Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Vol. 1819, Issue 2
  • DOI: 10.1016/j.bbagrm.2011.08.005

Golgi Traffic and Integrity Depend on N-Myristoyl Transferase-1 in Arabidopsis
journal, May 2013

  • Renna, Luciana; Stefano, Giovanni; Majeran, Wojciech
  • The Plant Cell, Vol. 25, Issue 5
  • DOI: 10.1105/tpc.113.111393

MorphoGraphX: A platform for quantifying morphogenesis in 4D
journal, May 2015

  • Barbier de Reuille, Pierre; Routier-Kierzkowska, Anne-Lise; Kierzkowski, Daniel
  • eLife, Vol. 4
  • DOI: 10.7554/eLife.05864

Potato sucrose transporter expression in minor veins indicates a role in phloem loading.
journal, November 1993

  • Riesmeier, J. W.; Hirner, B.; Frommer, W. B.
  • The Plant Cell, Vol. 5, Issue 11
  • DOI: 10.1105/tpc.5.11.1591

Isolation and characterization of a sucrose carrier cDNA from spinach by functional expression in yeast.
journal, December 1992


Perception of UV-B by the Arabidopsis UVR8 Protein
journal, March 2011


Generation of Spatial Patterns Through Cell Polarity Switching
journal, September 2011


Variability in the Control of Cell Division Underlies Sepal Epidermal Patterning in Arabidopsis thaliana
journal, May 2010


Integrative epigenomic mapping defines four main chromatin states in Arabidopsis: Organization of the Arabidopsis epigenome
journal, April 2011

  • Roudier, François; Ahmed, Ikhlak; Bérard, Caroline
  • The EMBO Journal, Vol. 30, Issue 10
  • DOI: 10.1038/emboj.2011.103

Natural Variants of AtHKT1 Enhance Na+ Accumulation in Two Wild Populations of Arabidopsis
journal, January 2006


Models of sequestration and receptor cross-talk for explaining multiple mutants in plant stem cell regulation
journal, January 2011

  • Sahlin, Patrik; Melke, Pontus; Jönsson, Henrik
  • BMC Systems Biology, Vol. 5, Issue 1
  • DOI: 10.1186/1752-0509-5-2

Physical Forces Regulate Plant Development and Morphogenesis
journal, May 2014


Divergent functions of VTI12 and VTI11 in trafficking to storage and lytic vacuoles in Arabidopsis
journal, February 2007

  • Sanmartin, M.; Ordonez, A.; Sohn, E. J.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 9
  • DOI: 10.1073/pnas.0611147104

Primary structure, genomic organization and heterologous expression of a glucose transporter from Arabidopsis thaliana.
journal, October 1990


The hexose carrier from Chlorella : cDNA cloning of a eucaryotic H
journal, December 1989


Isolation and Sequence of Tryptic Peptides from the Proton-Pumping ATPase of the Oat Plasma Membrane
journal, February 1988

  • Schaller, G. Eric; Sussman, Michael R.
  • Plant Physiology, Vol. 86, Issue 2
  • DOI: 10.1104/pp.86.2.512

A gene expression map of Arabidopsis thaliana development
journal, April 2005

  • Schmid, Markus; Davison, Timothy S.; Henz, Stefan R.
  • Nature Genetics, Vol. 37, Issue 5
  • DOI: 10.1038/ng1543

Patterns of population epigenomic diversity
journal, March 2013

  • Schmitz, Robert J.; Schultz, Matthew D.; Urich, Mark A.
  • Nature, Vol. 495, Issue 7440
  • DOI: 10.1038/nature11968

SHOREmap: simultaneous mapping and mutation identification by deep sequencing
journal, August 2009

  • Schneeberger, Korbinian; Ossowski, Stephan; Lanz, Christa
  • Nature Methods, Vol. 6, Issue 8
  • DOI: 10.1038/nmeth0809-550

Using membrane transporters to improve crops for sustainable food production
journal, May 2013

  • Schroeder, Julian I.; Delhaize, Emmanuel; Frommer, Wolf B.
  • Nature, Vol. 497, Issue 7447
  • DOI: 10.1038/nature11909

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data
journal, January 2012

  • Schulz, Marcel H.; Devanny, William E.; Gitter, Anthony
  • BMC Systems Biology, Vol. 6, Issue 1
  • DOI: 10.1186/1752-0509-6-104

Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis
journal, March 2006

  • Schwab, Rebecca; Ossowski, Stephan; Riester, Markus
  • The Plant Cell, Vol. 18, Issue 5
  • DOI: 10.1105/tpc.105.039834

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
journal, June 2012

  • Segura, Vincent; Vilhjálmsson, Bjarni J.; Platt, Alexander
  • Nature Genetics, Vol. 44, Issue 7
  • DOI: 10.1038/ng.2314

Cloning and expression in yeast of a plant potassium ion transport system
journal, May 1992


A High-Throughput Arabidopsis Reverse Genetics System
journal, November 2002

  • Sessions, Allen; Burke, Ellen; Presting, Gernot
  • The Plant Cell, Vol. 14, Issue 12
  • DOI: 10.1105/tpc.004630

A light-switchable gene promoter system
journal, September 2002

  • Shimizu-Sato, Sae; Huq, Enamul; Tepperman, James M.
  • Nature Biotechnology, Vol. 20, Issue 10
  • DOI: 10.1038/nbt734

Plant-Specific Microtubule-Associated Protein SPIRAL2 Is Required for Anisotropic Growth in Arabidopsis
journal, November 2004

  • Shoji, Tsubasa; Narita, Noriyuki N.; Hayashi, Kazunori
  • Plant Physiology, Vol. 136, Issue 4
  • DOI: 10.1104/pp.104.051748

The Ubiquitin 26s Proteasome Proteolytic Pathway
journal, June 2004


Starch in the Arabidopsis plant
journal, February 2012


Plant members of a family of sulfate transporters reveal functional subtypes.
journal, September 1995

  • Smith, F. W.; Ealing, P. M.; Hawkesford, M. J.
  • Proceedings of the National Academy of Sciences, Vol. 92, Issue 20
  • DOI: 10.1073/pnas.92.20.9373

Editorial overview: Plant morphogenesis—new understanding of its organization and evolution
journal, February 2014


A fortunate choice: the history of Arabidopsis as a model plant
journal, November 2002

  • Somerville, Chris; Koornneef, Maarten
  • Nature Reviews Genetics, Vol. 3, Issue 11
  • DOI: 10.1038/nrg927

Remembering the Prolonged Cold of Winter
journal, September 2013


Starch turnover: pathways, regulation and role in growth
journal, June 2012


CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis
journal, April 2001

  • Suárez-López, Paula; Wheatley, Kay; Robson, Frances
  • Nature, Vol. 410, Issue 6832
  • DOI: 10.1038/35074138

Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells
journal, January 2014


Hd3a Protein Is a Mobile Flowering Signal in Rice
journal, May 2007


Mechanism of auxin perception by the TIR1 ubiquitin ligase
journal, April 2007

  • Tan, Xu; Calderon-Villalobos, Luz Irina A.; Sharon, Michal
  • Nature, Vol. 446, Issue 7136
  • DOI: 10.1038/nature05731

An Arabidopsis gene regulatory network for secondary cell wall synthesis
journal, December 2014

  • Taylor-Teeples, M.; Lin, L.; de Lucas, M.
  • Nature, Vol. 517, Issue 7536
  • DOI: 10.1038/nature14099

Dwarf8 polymorphisms associate with variation in flowering time
journal, July 2001

  • Thornsberry, Jeffry M.; Goodman, Major M.; Doebley, John
  • Nature Genetics, Vol. 28, Issue 3
  • DOI: 10.1038/90135

Genome-wide association study of leaf architecture in the maize nested association mapping population
journal, January 2011

  • Tian, Feng; Bradbury, Peter J.; Brown, Patrick J.
  • Nature Genetics, Vol. 43, Issue 2
  • DOI: 10.1038/ng.746

Large-Scale Discovery of Induced Point Mutations With High-Throughput TILLING
journal, March 2003


A protocol for TILLING and Ecotilling in plants and animals
journal, December 2006


Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana
journal, June 2010

  • Todesco, Marco; Balasubramanian, Sureshkumar; Hu, Tina T.
  • Nature, Vol. 465, Issue 7298
  • DOI: 10.1038/nature09083

Global Mapping of the Yeast Genetic Interaction Network
journal, February 2004


The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses: The Botany Array Resource
journal, June 2005


Activation of protein splicing with light in yeast
journal, February 2008

  • Tyszkiewicz, Amy B.; Muir, Tom W.
  • Nature Methods, Vol. 5, Issue 4
  • DOI: 10.1038/nmeth.1189

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats
journal, December 2009


Lignin Biosynthesis and Structure
journal, May 2010

  • Vanholme, R.; Demedts, B.; Morreel, K.
  • Plant Physiology, Vol. 153, Issue 3, p. 895-905
  • DOI: 10.1104/pp.110.155119

O-Glycosylated Cell Wall Proteins Are Essential in Root Hair Growth
journal, June 2011


The nature of confounding in genome-wide association studies
journal, November 2012

  • Vilhjálmsson, Bjarni J.; Nordborg, Magnus
  • Nature Reviews Genetics, Vol. 14, Issue 1
  • DOI: 10.1038/nrg3382

Isolation and characterization of powdery mildew-resistant Arabidopsis mutants
journal, February 2000

  • Vogel, J.; Somerville, S.
  • Proceedings of the National Academy of Sciences, Vol. 97, Issue 4
  • DOI: 10.1073/pnas.030531997

Microbial life in the phyllosphere
journal, November 2012


Genes and networks regulating root anatomy and architecture
journal, May 2015

  • Wachsman, Guy; Sparks, Erin E.; Benfey, Philip N.
  • New Phytologist, Vol. 208, Issue 1
  • DOI: 10.1111/nph.13469

Lipid biochemists salute the genome
journal, March 2010


The ABCs of floral homeotic genes
journal, July 1994


Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
journal, September 2014


MOR1 is essential for organizing cortical microtubules in plants
journal, May 2001

  • Whittington, Angela T.; Vugrek, Oliver; Wei, Ke Jun
  • Nature, Vol. 411, Issue 6837
  • DOI: 10.1038/35079128

Integration of Spatial and Temporal Information During Floral Induction in Arabidopsis
journal, August 2005


An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets
journal, August 2007


Growth Control and Cell Wall Signaling in Plants
journal, June 2012


High-frequency homologous recombination in plants mediated by zinc-finger nucleases
journal, October 2005


SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors
journal, February 2012

  • Wu, M. -F.; Sang, Y.; Bezhani, S.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 9
  • DOI: 10.1073/pnas.1113409109

Regulation of Cell Proliferation in the Stomatal Lineage by the Arabidopsis MYB FOUR LIPS via Direct Targeting of Core Cell Cycle Genes
journal, July 2010


Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
journal, March 2009

  • Yadav, R. K.; Girke, T.; Pasala, S.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 12
  • DOI: 10.1073/pnas.0900843106

The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors
journal, July 1990

  • Yanofsky, Martin F.; Ma, Hong; Bowman, John L.
  • Nature, Vol. 346, Issue 6279
  • DOI: 10.1038/346035a0

The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis
journal, July 2014


A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
journal, December 2005

  • Yu, Jianming; Pressoir, Gael; Briggs, William H.
  • Nature Genetics, Vol. 38, Issue 2
  • DOI: 10.1038/ng1702

Mutations in Multiple XXT Genes of Arabidopsis Reveal the Complexity of Xyloglucan Biosynthesis
journal, June 2012

  • Zabotina, Olga A.; Avci, Utku; Cavalier, David
  • Plant Physiology, Vol. 159, Issue 4
  • DOI: 10.1104/pp.112.198119

From Laboratory to Field. Using Information from Arabidopsis to Engineer Salt, Cold, and Drought Tolerance in Crops
journal, June 2004

  • Zhang, James Z.; Creelman, Robert A.; Zhu, Jian-Kang
  • Plant Physiology, Vol. 135, Issue 2
  • DOI: 10.1104/pp.104.040295

An Arabidopsis Example of Association Mapping in Structured Samples
journal, January 2007


LACCASE Is Necessary and Nonredundant with PEROXIDASE for Lignin Polymerization during Vascular Development in Arabidopsis
journal, October 2013


GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox
journal, September 2004

  • Zimmermann, Philip; Hirsch-Hoffmann, Matthias; Hennig, Lars
  • Plant Physiology, Vol. 136, Issue 1
  • DOI: 10.1104/pp.104.046367

    Works referencing / citing this record:

    Directions for research and training in plant omics: Big Questions and Big Data
    journal, April 2019

    • Argueso, Cristiana T.; Assmann, Sarah M.; Birnbaum, Kenneth D.
    • Plant Direct, Vol. 3, Issue 4
    • DOI: 10.1002/pld3.133

    Directions for research and training in plant omics: Big Questions and Big Data
    journal, April 2019

    • Argueso, Cristiana T.; Assmann, Sarah M.; Birnbaum, Kenneth D.
    • Plant Direct, Vol. 3, Issue 4
    • DOI: 10.1002/pld3.133

    African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana
    journal, May 2017

    • Durvasula, Arun; Fulgione, Andrea; Gutaker, Rafal M.
    • Proceedings of the National Academy of Sciences, Vol. 114, Issue 20
    • DOI: 10.1073/pnas.1616736114

    Network-based hierarchical population structure analysis for large genomic data sets
    journal, November 2019

    • Greenbaum, Gili; Rubin, Amir; Templeton, Alan R.
    • Genome Research, Vol. 29, Issue 12
    • DOI: 10.1101/gr.250092.119

    Plant microRNAs: key regulators of root architecture and biotic interactions
    journal, June 2016

    • Couzigou, Jean-Malo; Combier, Jean-Philippe
    • New Phytologist, Vol. 212, Issue 1
    • DOI: 10.1111/nph.14058

    Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity
    journal, February 2019

    • Nikolov, Lachezar A.; Shushkov, Philip; Nevado, Bruno
    • New Phytologist, Vol. 222, Issue 3
    • DOI: 10.1111/nph.15732

    Blurring the boundaries between cereal crops and model plants
    journal, November 2019