DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater

Abstract

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a high explosive released to the environment as a result of weapons manufacturing and testing worldwide. At Los Alamos National Laboratory, the Technical Area (TA) 16 260 Outfall discharged high-explosives-bearing water from a high-explosives-machining facility to Cañon de Valle during 1951 through 1996. These discharges served as a primary source of high-explosives and inorganic-element contamination in the area. Data indicate that springs, surface water, alluvial groundwater, and perched-intermediate groundwater contain explosive compounds, including RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine); HMX (octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine); and TNT (2,4,6-trinitrotoluene). RDX has been detected in the regional aquifer in several wells, and a corrective measures evaluation is planned to identify remedial alternatives to protect the regional aquifer. Perched-intermediate groundwater at Technical Area 16 is present at depths from 650 ft to 1200 ft bgs. In this study, we examined the microbial diversity in a monitoring well completed in perched-intermediate groundwater contaminated by RDX, and examined the response of the microbial population to biostimulation under varying geochemical conditions. Results show that the groundwater microbiome was dominated by Actinobacteria and Proteobacteria. A total of 1,605 operational taxonomic units (OTUs) in 96 bacterial genera were identified. Rhodococcus was the most abundant genus (30.6%) and a total of 46 OTUs weremore » annotated as Rhodococcus. One OTU comprising 25.2% of total sequences was closely related to a RDX -degrading strain R. erythropolis HS4. A less abundant OTU from the Pseudomonas family closely related to RDX-degrading strain P. putida II-B was also present. Biostimulation significantly enriched Proteobacteria but decreased/eliminated the population of Actinobacteria. Consistent with RDX degradation, the OTU closely related to the RDX-degrading P. putida strain II-B was specifically enriched in the RDX-degrading samples. Analysis of the accumulation of RDX-degradation products reveals that during active RDX degradation, there is a transient increase in the concentration of the degradation products MNX, DNX, TNX, and NDAB. The accumulation of these degradation products suggests that RDX is degraded via sequential reduction of the nitro functional groups followed by abiotic ring-cleavage. Here, the results suggest that strict anaerobic conditions are needed to stimulate RDX degradation under the TA-16 site-specific conditions.« less

Authors:
 [1];  [1];  [1];  [1];  [2];  [3];  [4];  [4];  [4];  [4]
  1. Earth Systems Observations EES‐14 Earth and Environmental Sciences Division Los Alamos National Laboratory Los Alamos NM USA
  2. Environmental Programs ADEP Los Alamos National Laboratory Los Alamos NM USA
  3. School of Science and Technology Georgia Gwinnett College Lawrenceville GA USA
  4. Bioenergy and Biome Sciences Biology Sciences Division Los Alamos National Laboratory Los Alamos NM USA
Publication Date:
Research Org.:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Org.:
USDOE Office of Environmental Management (EM)
OSTI Identifier:
1332767
Alternate Identifier(s):
OSTI ID: 1333023; OSTI ID: 1338778
Report Number(s):
LA-UR-16-23502
Journal ID: ISSN 2045-8827; e00423
Grant/Contract Number:  
AC52-06NA25396
Resource Type:
Published Article
Journal Name:
MicrobiologyOpen
Additional Journal Information:
Journal Name: MicrobiologyOpen Journal Volume: 6 Journal Issue: 2; Journal ID: ISSN 2045-8827
Publisher:
Wiley Blackwell (John Wiley & Sons)
Country of Publication:
United Kingdom
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Biological Science; Earth Sciences; Environmental Protection; Biostimulation, hexahydro-1,3,5-trinitro-1,3,5-triazine, bacterial profiling

Citation Formats

Wang, Dongping, Boukhalfa, Hakim, Marina, Oana, Ware, Doug S., Goering, Tim J., Sun, Fengjie, Daligault, Hajnalka E., Lo, Chien‐Chi, Vuyisich, Momchilo, and Starkenburg, Shawn R. Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater. United Kingdom: N. p., 2016. Web. doi:10.1002/mbo3.423.
Wang, Dongping, Boukhalfa, Hakim, Marina, Oana, Ware, Doug S., Goering, Tim J., Sun, Fengjie, Daligault, Hajnalka E., Lo, Chien‐Chi, Vuyisich, Momchilo, & Starkenburg, Shawn R. Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater. United Kingdom. https://doi.org/10.1002/mbo3.423
Wang, Dongping, Boukhalfa, Hakim, Marina, Oana, Ware, Doug S., Goering, Tim J., Sun, Fengjie, Daligault, Hajnalka E., Lo, Chien‐Chi, Vuyisich, Momchilo, and Starkenburg, Shawn R. Thu . "Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater". United Kingdom. https://doi.org/10.1002/mbo3.423.
@article{osti_1332767,
title = {Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater},
author = {Wang, Dongping and Boukhalfa, Hakim and Marina, Oana and Ware, Doug S. and Goering, Tim J. and Sun, Fengjie and Daligault, Hajnalka E. and Lo, Chien‐Chi and Vuyisich, Momchilo and Starkenburg, Shawn R.},
abstractNote = {Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a high explosive released to the environment as a result of weapons manufacturing and testing worldwide. At Los Alamos National Laboratory, the Technical Area (TA) 16 260 Outfall discharged high-explosives-bearing water from a high-explosives-machining facility to Cañon de Valle during 1951 through 1996. These discharges served as a primary source of high-explosives and inorganic-element contamination in the area. Data indicate that springs, surface water, alluvial groundwater, and perched-intermediate groundwater contain explosive compounds, including RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine); HMX (octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine); and TNT (2,4,6-trinitrotoluene). RDX has been detected in the regional aquifer in several wells, and a corrective measures evaluation is planned to identify remedial alternatives to protect the regional aquifer. Perched-intermediate groundwater at Technical Area 16 is present at depths from 650 ft to 1200 ft bgs. In this study, we examined the microbial diversity in a monitoring well completed in perched-intermediate groundwater contaminated by RDX, and examined the response of the microbial population to biostimulation under varying geochemical conditions. Results show that the groundwater microbiome was dominated by Actinobacteria and Proteobacteria. A total of 1,605 operational taxonomic units (OTUs) in 96 bacterial genera were identified. Rhodococcus was the most abundant genus (30.6%) and a total of 46 OTUs were annotated as Rhodococcus. One OTU comprising 25.2% of total sequences was closely related to a RDX -degrading strain R. erythropolis HS4. A less abundant OTU from the Pseudomonas family closely related to RDX-degrading strain P. putida II-B was also present. Biostimulation significantly enriched Proteobacteria but decreased/eliminated the population of Actinobacteria. Consistent with RDX degradation, the OTU closely related to the RDX-degrading P. putida strain II-B was specifically enriched in the RDX-degrading samples. Analysis of the accumulation of RDX-degradation products reveals that during active RDX degradation, there is a transient increase in the concentration of the degradation products MNX, DNX, TNX, and NDAB. The accumulation of these degradation products suggests that RDX is degraded via sequential reduction of the nitro functional groups followed by abiotic ring-cleavage. Here, the results suggest that strict anaerobic conditions are needed to stimulate RDX degradation under the TA-16 site-specific conditions.},
doi = {10.1002/mbo3.423},
journal = {MicrobiologyOpen},
number = 2,
volume = 6,
place = {United Kingdom},
year = {Thu Nov 17 00:00:00 EST 2016},
month = {Thu Nov 17 00:00:00 EST 2016}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1002/mbo3.423

Citation Metrics:
Cited by: 18 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Nocardia ignorata, a New Agent of Human Nocardiosis Isolated from Respiratory Specimens in Europe and Soil Samples from Kuwait
journal, December 2005


The explosive-degrading cytochrome P450 XplA: Biochemistry, structural features and prospects for bioremediation
journal, January 2011

  • Rylott, Elizabeth L.; Jackson, Rosamond G.; Sabbadin, Federico
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1814, Issue 1
  • DOI: 10.1016/j.bbapap.2010.07.004

A Type VI Secretion System Is Involved in Pseudomonas fluorescens Bacterial Competition
journal, February 2014


Pedobacter ginsengisoli sp. nov., a DNase-producing bacterium isolated from soil of a ginseng field in South Korea
journal, November 2006

  • Ten, L. N.; Liu, Q. -M.; Im, W. -T.
  • INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 11
  • DOI: 10.1099/ijs.0.64414-0

Adaptation Genomics of a Small-Colony Variant in a Pseudomonas chlororaphis 30-84 Biofilm
journal, November 2014

  • Wang, Dongping; Dorosky, Robert J.; Han, Cliff S.
  • Applied and Environmental Microbiology, Vol. 81, Issue 3
  • DOI: 10.1128/AEM.02617-14

Determination of Key Metabolites during Biodegradation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine with Rhodococcus sp. Strain DN22
journal, January 2002


Transformation of RDX and other energetic compounds by xenobiotic reductases XenA and XenB
journal, May 2009

  • Fuller, Mark E.; McClay, Kevin; Hawari, Jalal
  • Applied Microbiology and Biotechnology, Vol. 84, Issue 3
  • DOI: 10.1007/s00253-009-2024-6

Multiple sequence alignment with Clustal X
journal, October 1998


Confidence Limits on Phylogenies: an Approach Using the Bootstrap
journal, July 1985


Role of Nitrogen Limitation in Transformation of RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Gordonia sp. Strain KTR9
journal, December 2012

  • Indest, Karl J.; Hancock, Dawn E.; Jung, Carina M.
  • Applied and Environmental Microbiology, Vol. 79, Issue 5
  • DOI: 10.1128/AEM.03905-12

Occurrence and diversity of nitrogen-fixing Sphingomonas bacteria associated with rice plants grown in Brazil
journal, April 2009

  • Videira, Sandy Sampaio; de Araujo, Jean Luiz Simões; da Silva Rodrigues, Luciana
  • FEMS Microbiology Letters, Vol. 293, Issue 1
  • DOI: 10.1111/j.1574-6968.2008.01475.x

Microbial community characterization and functional gene quantification in RDX-degrading microcosms derived from sediment and groundwater at two naval sites
journal, April 2016

  • Wilson, Fernanda Paes; Cupples, Alison M.
  • Applied Microbiology and Biotechnology, Vol. 100, Issue 16
  • DOI: 10.1007/s00253-016-7559-8

Isolation of three hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading species of the family Enterobacteriaceae from nitramine explosive-contaminated soil.
journal, January 1994


Flavobacterium hibernum sp. nov., a lactose-utilizing bacterium from a freshwater Antarctic Lake
journal, October 1998

  • McCAMMON, S. A.; Innes, B. H.; Bowman, J. P.
  • International Journal of Systematic Bacteriology, Vol. 48, Issue 4
  • DOI: 10.1099/00207713-48-4-1405

Hydrogenophaga carboriunda sp. nov., a Tertiary Butyl Alcohol-Oxidizing, Psychrotolerant Aerobe Derived from Granular-Activated Carbon (GAC)
journal, December 2013

  • Reinauer, Kimberly M.; Popovic, Jovan; Weber, Christopher D.
  • Current Microbiology, Vol. 68, Issue 4
  • DOI: 10.1007/s00284-013-0501-8

Simultaneous degradation of nitroaromatic compounds TNT, RDX, atrazine, and simazine by Pseudomonas putida HK-6 in bench-scale bioreactors
journal, September 2008

  • Cho, Yun-Seok; Lee, Bheong-Uk; Oh, Kye-Heon
  • Journal of Chemical Technology & Biotechnology, Vol. 83, Issue 9
  • DOI: 10.1002/jctb.1924

Engineering plants for the phytoremediation of RDX in the presence of the co-contaminating explosive TNT
journal, July 2011


QIIME allows analysis of high-throughput community sequencing data
journal, April 2010

  • Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse
  • Nature Methods, Vol. 7, Issue 5
  • DOI: 10.1038/nmeth.f.303

Cloning and Sequence Analysis of Two PseudomonasFlavoprotein Xenobiotic Reductases
journal, October 1999


AmyR Is a Novel Negative Regulator of Amylovoran Production in Erwinia amylovora
journal, September 2012


The Explosive-Degrading Cytochrome P450 System Is Highly Conserved among Strains of Rhodococcus spp.
journal, May 2008

  • Seth-Smith, H. M. B.; Edwards, J.; Rosser, S. J.
  • Applied and Environmental Microbiology, Vol. 74, Issue 14
  • DOI: 10.1128/AEM.00391-08

An explosive-degrading cytochrome P450 activity and its targeted application for the phytoremediation of RDX
journal, January 2006

  • Rylott, Elizabeth L.; Jackson, Rosamond G.; Edwards, James
  • Nature Biotechnology, Vol. 24, Issue 2
  • DOI: 10.1038/nbt1184

2,4,6-Trinitrotoluene Reduction by an Fe-Only Hydrogenase in Clostridium acetobutylicum
journal, March 2003


Microbial Community Dynamics during Acetate Biostimulation of RDX-Contaminated Groundwater
journal, June 2013

  • Livermore, Joshua A.; Jin, Yang Oh; Arnseth, Richard W.
  • Environmental Science & Technology, Vol. 47, Issue 14
  • DOI: 10.1021/es4012788

Thermodynamics of formation of coffinite, USiO 4
journal, May 2015

  • Guo, Xiaofeng; Szenknect, Stéphanie; Mesbah, Adel
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 21
  • DOI: 10.1073/pnas.1507441112

Characterization of Metabolites during Biodegradation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (RDX) with Municipal Anaerobic Sludge
journal, June 2000


Chemotaxis-mediated biodegradation of cyclic nitramine explosives RDX, HMX, and CL-20 by Clostridium sp. EDB2
journal, April 2004

  • Bhushan, Bharat; Halasz, Annamaria; Thiboutot, Sonia
  • Biochemical and Biophysical Research Communications, Vol. 316, Issue 3
  • DOI: 10.1016/j.bbrc.2004.02.120

Evidence that RDX biodegradation by Rhodococcus strain DN22 is plasmid-borne and involves a cytochrome p-450
journal, September 2002


U(VI) Bioreduction with Emulsified Vegetable Oil as the Electron Donor – Model Application to a Field Test
journal, March 2013

  • Tang, Guoping; Watson, David B.; Wu, Wei-Min
  • Environmental Science & Technology, Vol. 47, Issue 7
  • DOI: 10.1021/es304643h

Biodegradation of RDX Nitroso Products MNX and TNX by Cytochrome P450 XplA
journal, June 2012

  • Halasz, Annamaria; Manno, Dominic; Perreault, Nancy N.
  • Environmental Science & Technology, Vol. 46, Issue 13
  • DOI: 10.1021/es3011964

Lateral Transfer of Genes for Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (RDX) Degradation
journal, March 2009

  • Andeer, P. F.; Stahl, D. A.; Bruce, N. C.
  • Applied and Environmental Microbiology, Vol. 75, Issue 10
  • DOI: 10.1128/AEM.02396-08

Cloning, Sequencing, and Characterization of the Hexahydro-1,3,5-Trinitro-1,3,5-Triazine Degradation Gene Cluster from Rhodococcus rhodochrous
journal, October 2002


Biodegradation of the Explosives TNT, RDX and HMX
book, October 2011


Microbial Degradation and Toxicity of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine
journal, October 2012

  • Khan, Muhammad Imran
  • Journal of Microbiology and Biotechnology, Vol. 22, Issue 10
  • DOI: 10.4014/jmb.1203.04002

Energetics of metastudtite and implications for nuclear waste alteration
journal, November 2014

  • Guo, Xiaofeng; Ushakov, Sergey V.; Labs, Sabrina
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 50
  • DOI: 10.1073/pnas.1421144111

Comparison of biotic and abiotic treatment approaches for co-mingled perchlorate, nitrate, and nitramine explosives in groundwater
journal, January 2007


Exploring the biochemical properties and remediation applications of the unusual explosive-degrading P450 system XplA/B
journal, October 2007

  • Jackson, R. G.; Rylott, E. L.; Fournier, D.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 43
  • DOI: 10.1073/pnas.0705110104

Biotransformation of Hexahydro-1,3,5-trinitro-1,3,5-triazine Catalyzed by a NAD(P)H:  Nitrate Oxidoreductase from Aspergillus niger
journal, July 2002

  • Bhushan, Bharat; Halasz, Annamaria; Spain, Jim
  • Environmental Science & Technology, Vol. 36, Issue 14
  • DOI: 10.1021/es011460a

Application of 13C-stable isotope probing to identify RDX-degrading microorganisms in groundwater
journal, July 2013