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Title: Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi type strain ACAM 34 and its annotation. In conclusion, this genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.
Authors:
 [1] ;  [2] ;  [1] ;  [1] ;  [1] ;  [1] ;  [1] ;  [1] ;  [3] ;  [3] ;  [1] ;  [3] ;  [3] ;  [3] ;  [3] ;  [4] ;  [4] ;  [4] ;  [1] ;  [1] more »;  [5] ;  [2] ;  [6] ;  [1] « less
  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. Univ. of Maryland School of Medicine, Univ. System of Maryland, Baltimore, MD (United States)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  5. Univ. of New South Wales, Sydney, NSW (Australia)
  6. Univ. of Illinois at Urbana-Champaign, Champaign, IL (United States)
Publication Date:
Grant/Contract Number:
AC05-00OR22725; AC02-05CH11231
Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 11; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Research Org:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Archaea; Halophile; Halorubrum; Extremophile; Cold adaptation; Tree of life
OSTI Identifier:
1325497
Alternate Identifier(s):
OSTI ID: 1456956

Anderson, Iain J., DasSarma, Priya, Lucas, Susan, Copeland, Alex, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Dalin, Eileen, Bruce, David C., Goodwin, Lynne, Pitluck, Sam, Sims, David, Brettin, Thomas S., Detter, John C., Han, Cliff S., Larimer, Frank, Hauser, Loren, Land, Miriam, Ivanova, Natalia, Richardson, Paul, Cavicchioli, Ricardo, DasSarma, Shiladitya, Woese, Carl R., and Kyrpides, Nikos C.. Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. United States: N. p., Web. doi:10.1186/s40793-016-0194-2.
Anderson, Iain J., DasSarma, Priya, Lucas, Susan, Copeland, Alex, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Dalin, Eileen, Bruce, David C., Goodwin, Lynne, Pitluck, Sam, Sims, David, Brettin, Thomas S., Detter, John C., Han, Cliff S., Larimer, Frank, Hauser, Loren, Land, Miriam, Ivanova, Natalia, Richardson, Paul, Cavicchioli, Ricardo, DasSarma, Shiladitya, Woese, Carl R., & Kyrpides, Nikos C.. Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. United States. doi:10.1186/s40793-016-0194-2.
Anderson, Iain J., DasSarma, Priya, Lucas, Susan, Copeland, Alex, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Dalin, Eileen, Bruce, David C., Goodwin, Lynne, Pitluck, Sam, Sims, David, Brettin, Thomas S., Detter, John C., Han, Cliff S., Larimer, Frank, Hauser, Loren, Land, Miriam, Ivanova, Natalia, Richardson, Paul, Cavicchioli, Ricardo, DasSarma, Shiladitya, Woese, Carl R., and Kyrpides, Nikos C.. 2016. "Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34". United States. doi:10.1186/s40793-016-0194-2. https://www.osti.gov/servlets/purl/1325497.
@article{osti_1325497,
title = {Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34},
author = {Anderson, Iain J. and DasSarma, Priya and Lucas, Susan and Copeland, Alex and Lapidus, Alla and Del Rio, Tijana Glavina and Tice, Hope and Dalin, Eileen and Bruce, David C. and Goodwin, Lynne and Pitluck, Sam and Sims, David and Brettin, Thomas S. and Detter, John C. and Han, Cliff S. and Larimer, Frank and Hauser, Loren and Land, Miriam and Ivanova, Natalia and Richardson, Paul and Cavicchioli, Ricardo and DasSarma, Shiladitya and Woese, Carl R. and Kyrpides, Nikos C.},
abstractNote = {Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The type strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi type strain ACAM 34 and its annotation. In conclusion, this genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.},
doi = {10.1186/s40793-016-0194-2},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 11,
place = {United States},
year = {2016},
month = {9}
}

Works referenced in this record:

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
journal, January 1994
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