Using co-expression analysis and stress-based screens to uncover Arabidopsis peroxisomal proteins involved in drought response
Abstract
Peroxisomes are essential organelles that house a wide array of metabolic reactions important for plant growth and development. However, our knowledge regarding the role of peroxisomal proteins in various biological processes, including plant stress response, is still incomplete. Recent proteomic studies of plant peroxisomes significantly increased the number of known peroxisomal proteins and greatly facilitated the study of peroxisomes at the systems level. The objectives of this study were to determine whether genes that encode peroxisomal proteins with related functions are co-expressed in Arabidopsis and identify peroxisomal proteins involved in stress response using in silico analysis and mutant screens. Using microarray data from online databases, we performed hierarchical clustering analysis to generate a comprehensive view of transcript level changes for Arabidopsis peroxisomal genes during development and under abiotic and biotic stress conditions. Many genes involved in the same metabolic pathways exhibited co-expression, some genes known to be involved in stress response are regulated by the corresponding stress conditions, and function of some peroxisomal proteins could be predicted based on their coexpression pattern. Since drought caused expression changes to the highest number of genes that encode peroxisomal proteins, we subjected a subset of Arabidopsis peroxisomal mutants to a drought stress assay.more »
- Authors:
-
- Michigan State Univ., East Lansing, MI (United States)
- Iowa State Univ., Ames, IA (United States)
- Publication Date:
- Research Org.:
- Michigan State Univ., East Lansing, MI (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1324983
- Grant/Contract Number:
- FG02-91ER20021
- Resource Type:
- Accepted Manuscript
- Journal Name:
- PLoS ONE
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 9; Journal ID: ISSN 1932-6203
- Publisher:
- Public Library of Science
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; plant resistance to abiotic stress; arabidopsis thaliana; peroxisomes; drought adaptation; fluorescence imaging; chlorophyll; gene expression; leaves
Citation Formats
Li, Jiying, Hu, Jianping, and Bassham, Diane. Using co-expression analysis and stress-based screens to uncover Arabidopsis peroxisomal proteins involved in drought response. United States: N. p., 2015.
Web. doi:10.1371/journal.pone.0137762.
Li, Jiying, Hu, Jianping, & Bassham, Diane. Using co-expression analysis and stress-based screens to uncover Arabidopsis peroxisomal proteins involved in drought response. United States. https://doi.org/10.1371/journal.pone.0137762
Li, Jiying, Hu, Jianping, and Bassham, Diane. Mon .
"Using co-expression analysis and stress-based screens to uncover Arabidopsis peroxisomal proteins involved in drought response". United States. https://doi.org/10.1371/journal.pone.0137762. https://www.osti.gov/servlets/purl/1324983.
@article{osti_1324983,
title = {Using co-expression analysis and stress-based screens to uncover Arabidopsis peroxisomal proteins involved in drought response},
author = {Li, Jiying and Hu, Jianping and Bassham, Diane},
abstractNote = {Peroxisomes are essential organelles that house a wide array of metabolic reactions important for plant growth and development. However, our knowledge regarding the role of peroxisomal proteins in various biological processes, including plant stress response, is still incomplete. Recent proteomic studies of plant peroxisomes significantly increased the number of known peroxisomal proteins and greatly facilitated the study of peroxisomes at the systems level. The objectives of this study were to determine whether genes that encode peroxisomal proteins with related functions are co-expressed in Arabidopsis and identify peroxisomal proteins involved in stress response using in silico analysis and mutant screens. Using microarray data from online databases, we performed hierarchical clustering analysis to generate a comprehensive view of transcript level changes for Arabidopsis peroxisomal genes during development and under abiotic and biotic stress conditions. Many genes involved in the same metabolic pathways exhibited co-expression, some genes known to be involved in stress response are regulated by the corresponding stress conditions, and function of some peroxisomal proteins could be predicted based on their coexpression pattern. Since drought caused expression changes to the highest number of genes that encode peroxisomal proteins, we subjected a subset of Arabidopsis peroxisomal mutants to a drought stress assay. Mutants of the LON2 protease and the photorespiratory enzyme hydroxypyruvate reductase 1 (HPR1) showed enhanced susceptibility to drought, suggesting the involvement of peroxisomal quality control and photorespiration in drought resistance. Lastly, our study provided a global view of how genes that encode peroxisomal proteins respond to developmental and environmental cues and began to reveal additional peroxisomal proteins involved in stress response, thus opening up new avenues to investigate the role of peroxisomes in plant adaptation to environmental stresses.},
doi = {10.1371/journal.pone.0137762},
journal = {PLoS ONE},
number = 9,
volume = 10,
place = {United States},
year = {Mon Sep 14 00:00:00 EDT 2015},
month = {Mon Sep 14 00:00:00 EDT 2015}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 29 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Peroxisome Assembly and Functional Diversity in Eukaryotic Microorganisms
journal, October 2012
- Pieuchot, Laurent; Jedd, Gregory
- Annual Review of Microbiology, Vol. 66, Issue 1
Plant Peroxisomes: Biogenesis and Function
journal, June 2012
- Hu, Jianping; Baker, Alison; Bartel, Bonnie
- The Plant Cell, Vol. 24, Issue 6
Peroxisomes take shape
journal, November 2013
- Smith, Jennifer J.; Aitchison, John D.
- Nature Reviews Molecular Cell Biology, Vol. 14, Issue 12
Peroxisome Biogenesis and Function
journal, January 2009
- Kaur, Navneet; Reumann, Sigrun; Hu, Jianping
- The Arabidopsis Book, Vol. 7
Defining the Plant Peroxisomal Proteome: From Arabidopsis to Rice
journal, January 2011
- Kaur, Navneet; Hu, Jianping
- Frontiers in Plant Science, Vol. 2
Peroxisomes as a cellular source of reactive nitrogen species signal molecules
journal, February 2011
- del Río, Luis A.
- Archives of Biochemistry and Biophysics, Vol. 506, Issue 1
The reactive oxygen species network pathways: an essential prerequisite for perception of pathogen attack and the acquired disease resistance in plants
journal, September 2006
- Kotchoni, Simeon O.; Gachomo, Emma W.
- Journal of Biosciences, Vol. 31, Issue 3
Catalase is a sink for H2O2 and is indispensable for stress defence in C3 plants
journal, August 1997
- Willekens, H.
- The EMBO Journal, Vol. 16, Issue 16
Conditional oxidative stress responses in the Arabidopsis photorespiratory mutant cat2 demonstrate that redox state is a key modulator of daylength-dependent gene expression, and define photoperiod as a crucial factor in the regulation of H2O2-induced cel: Photoperiod and H2O2signalling
journal, September 2007
- Queval, Guillaume; Issakidis-Bourguet, Emmanuelle; Hoeberichts, Frank A.
- The Plant Journal, Vol. 52, Issue 4
Plant eR Genes That Encode Photorespiratory Enzymes Confer Resistance against Disease
journal, December 2003
- Taler, Dvir; Galperin, Marjana; Benjamin, Ido
- The Plant Cell, Vol. 16, Issue 1
Glycolate Oxidase Modulates Reactive Oxygen Species–Mediated Signal Transduction during Nonhost Resistance in Nicotiana benthamiana and Arabidopsis
journal, January 2012
- Rojas, Clemencia M.; Senthil-Kumar, Muthappa; Wang, Keri
- The Plant Cell, Vol. 24, Issue 1
Subcellular Targeting of Nine Calcium-Dependent Protein Kinase Isoforms from Arabidopsis
journal, July 2003
- Dammann, Christian; Ichida, Audrey; Hong, Bimei
- Plant Physiology, Vol. 132, Issue 4
AtCPK1 calcium-dependent protein kinase mediates pathogen resistance in Arabidopsis: AtCPK1 is involved in pathogen resistance
journal, May 2010
- Coca, María; San Segundo, Blanca
- The Plant Journal, Vol. 63, Issue 3
Pre- and Postinvasion Defenses Both Contribute to Nonhost Resistance in Arabidopsis
journal, November 2005
- Lipka, V.
- Science, Vol. 310, Issue 5751
Glucosinolate Metabolites Required for an Arabidopsis Innate Immune Response
journal, January 2009
- Clay, N. K.; Adio, A. M.; Denoux, C.
- Science, Vol. 323, Issue 5910
AGB1 and PMR5 Contribute to PEN2-Mediated Preinvasion Resistance to Magnaporthe oryzae in Arabidopsis thaliana
journal, November 2009
- Maeda, Kana; Houjyou, Yasunari; Komatsu, Takuma
- Molecular Plant-Microbe Interactions, Vol. 22, Issue 11
A Glucosinolate Metabolism Pathway in Living Plant Cells Mediates Broad-Spectrum Antifungal Defense
journal, January 2009
- Bednarek, P.; Pislewska-Bednarek, M.; Svatos, A.
- Science, Vol. 323, Issue 5910
The coi1-16 Mutant Harbors a Second Site Mutation Rendering PEN2 Nonfunctional
journal, April 2008
- Westphal, Lore; Scheel, Dierk; Rosahl, Sabine
- The Plant Cell, Vol. 20, Issue 4
How do plants achieve immunity? Defence without specialized immune cells
journal, January 2012
- Spoel, Steven H.; Dong, Xinnian
- Nature Reviews Immunology, Vol. 12, Issue 2
Specification of the Peroxisome Targeting Signals Type 1 and Type 2 of Plant Peroxisomes by Bioinformatics Analyses
journal, June 2004
- Reumann, Sigrun
- Plant Physiology, Vol. 135, Issue 2
The p33 auxiliary replicase protein of Cucumber necrosis virus targets peroxisomes and infection induces de novo peroxisome formation from the endoplasmic reticulum
journal, March 2014
- Rochon, D'Ann; Singh, Bhavana; Reade, Ron
- Virology, Vol. 452-453
Localization of the Tomato Bushy Stunt Virus Replication Protein p33 Reveals a Peroxisome-to-Endoplasmic Reticulum Sorting Pathway
journal, November 2005
- McCartney, Andrew W.; Greenwood, John S.; Fabian, Marc R.
- The Plant Cell, Vol. 17, Issue 12
A gene expression map of Arabidopsis thaliana development
journal, April 2005
- Schmid, Markus; Davison, Timothy S.; Henz, Stefan R.
- Nature Genetics, Vol. 37, Issue 5
Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in -Oxidation and Development
journal, October 2013
- Quan, S.; Yang, P.; Cassin-Ross, G.
- PLANT PHYSIOLOGY, Vol. 163, Issue 4
Bioconductor: open software development for computational biology and bioinformatics
journal, September 2004
- Gentleman, Robert C.; Carey, Vincent J.; Bates, Douglas M.
- Genome Biology, Vol. 5, Issue 10, p. R80
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
journal, April 2003
- Irizarry, Rafael A.; Hobbs, Bridget; Collin, Francois
- Biostatistics, Vol. 4, Issue 2, p. 249-264
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
journal, January 2004
- Smyth, Gordon K.
- Statistical Applications in Genetics and Molecular Biology, Vol. 3, Issue 1
Temporal Dynamics of Growth and Photosynthesis Suppression in Response to Jasmonate Signaling
journal, May 2014
- Attaran, Elham; Major, Ian T.; Cruz, Jeffrey A.
- Plant Physiology, Vol. 165, Issue 3
NIH Image to ImageJ: 25 years of image analysis
journal, June 2012
- Schneider, Caroline A.; Rasband, Wayne S.; Eliceiri, Kevin W.
- Nature Methods, Vol. 9, Issue 7
CAMTA 1 regulates drought responses in Arabidopsis thaliana
journal, January 2013
- Pandey, Neha; Ranjan, Alok; Pant, Poonam
- BMC Genomics, Vol. 14, Issue 1
When is a peroxisome not a peroxisome?
journal, October 2008
- Pracharoenwattana, Itsara; Smith, Steven M.
- Trends in Plant Science, Vol. 13, Issue 10
Photorespiration: players, partners and origin
journal, June 2010
- Bauwe, Hermann; Hagemann, Martin; Fernie, Alisdair R.
- Trends in Plant Science, Vol. 15, Issue 6
Transcriptional networks — crops, clocks, and abiotic stress
journal, April 2015
- Gehan, Malia A.; Greenham, Kathleen; Mockler, Todd C.
- Current Opinion in Plant Biology, Vol. 24
Transcriptional Regulatory Networks in Cellular Responses and Tolerance to Dehydration and cold Stresses
journal, June 2006
- Yamaguchi-Shinozaki, Kazuko; Shinozaki, Kazuo
- Annual Review of Plant Biology, Vol. 57, Issue 1
Peroxule extension over ER-defined paths constitutes a rapid subcellular response to hydroxyl stress
journal, July 2009
- Sinclair, Alison M.; Trobacher, Chris P.; Mathur, Neeta
- The Plant Journal, Vol. 59, Issue 2
Jasmonate Passes Muster: A Receptor and Targets for the Defense Hormone
journal, June 2009
- Browse, John
- Annual Review of Plant Biology, Vol. 60, Issue 1
The emerging role of photorespiration and non-photorespiratory peroxisomal metabolism in pathogen defence
journal, March 2013
- Sørhagen, K.; Laxa, M.; Peterhänsel, C.
- Plant Biology, Vol. 15, Issue 4
Peroxisomes and Photomorphogenesis
book, January 2013
- Kaur, Navneet; Li, Jiying; Hu, Jianping
- Peroxisomes and their Key Role in Cellular Signaling and Metabolism
Light Induces Peroxisome Proliferation in Arabidopsis Seedlings through the Photoreceptor Phytochrome A, the Transcription Factor HY5 HOMOLOG, and the Peroxisomal Protein PEROXIN11b
journal, January 2008
- Desai, Mintu; Hu, Jianping
- Plant Physiology, Vol. 146, Issue 3
S ALT AND D ROUGHT S TRESS S IGNAL T RANSDUCTION IN P LANTS
journal, June 2002
- Zhu, Jian-Kang
- Annual Review of Plant Biology, Vol. 53, Issue 1
A simple assay to identify peroxisomal proteins involved in 12-oxo-phytodienoic acid metabolism
journal, May 2014
- Cassin-Ross, Gaëlle; Hu, Jianping
- Plant Signaling & Behavior, Vol. 9, Issue 8
Systematic Phenotypic Screen of Arabidopsis Peroxisomal Mutants Identifies Proteins Involved in -Oxidation
journal, September 2014
- Cassin-Ross, G.; Hu, J.
- PLANT PHYSIOLOGY, Vol. 166, Issue 3
Regulation of Osmotic Stress-responsive Gene Expression by the LOS6/ABA1 Locus in Arabidopsis
journal, January 2002
- Xiong, Liming; Lee, Hojoung; Ishitani, Manabu
- Journal of Biological Chemistry, Vol. 277, Issue 10
Identification and Characterization of a Stress-Inducible and a Constitutive Small Heat-Shock Protein Targeted to the Matrix of Plant Peroxisomes
journal, March 2006
- Ma, Changle; Haslbeck, Martin; Babujee, Lavanya
- Plant Physiology, Vol. 141, Issue 1
In vivo subcellular targeting analysis validates a novel peroxisome targeting signal type 2 and the peroxisomal localization of two proteins with putative functions in defense in Arabidopsis
journal, February 2010
- Quan, Sheng; Switzenberg, Robert; Reumann, Sigrun
- Plant Signaling & Behavior, Vol. 5, Issue 2
In-Depth Proteome Analysis of Arabidopsis Leaf Peroxisomes Combined with in Vivo Subcellular Targeting Verification Indicates Novel Metabolic and Regulatory Functions of Peroxisomes
journal, March 2009
- Reumann, Sigrun; Quan, Sheng; Aung, Kyaw
- Plant Physiology, Vol. 150, Issue 1
Disrupting Autophagy Restores Peroxisome Function to an Arabidopsis lon2 Mutant and Reveals a Role for the LON2 Protease in Peroxisomal Matrix Protein Degradation
journal, October 2013
- Farmer, Lisa M.; Rinaldi, Mauro A.; Young, Pierce G.
- The Plant Cell, Vol. 25, Issue 10
Arabidopsis LON2 Is Necessary for Peroxisomal Function and Sustained Matrix Protein Import
journal, September 2009
- Lingard, Matthew J.; Bartel, Bonnie
- Plant Physiology, Vol. 151, Issue 3
Microarray Expression Analyses of Arabidopsis Guard Cells and Isolation of a Recessive Abscisic Acid Hypersensitive Protein Phosphatase 2C Mutant
journal, February 2004
- Leonhardt, Nathalie; Kwak, June M.; Robert, Nadia
- The Plant Cell, Vol. 16, Issue 3
Chaperone and Protease Functions of LON Protease 2 Modulate the Peroxisomal Transition and Degradation with Autophagy
journal, February 2014
- Goto-Yamada, Shino; Mano, Shoji; Nakamori, Chihiro
- Plant and Cell Physiology, Vol. 55, Issue 3
Peroxisomes as a cellular source of reactive nitrogen species signal molecules
journal, February 2011
- del Río, Luis A.
- Archives of Biochemistry and Biophysics, Vol. 506, Issue 1
Transcriptional networks — crops, clocks, and abiotic stress
journal, April 2015
- Gehan, Malia A.; Greenham, Kathleen; Mockler, Todd C.
- Current Opinion in Plant Biology, Vol. 24
When is a peroxisome not a peroxisome?
journal, October 2008
- Pracharoenwattana, Itsara; Smith, Steven M.
- Trends in Plant Science, Vol. 13, Issue 10
Photorespiration: players, partners and origin
journal, June 2010
- Bauwe, Hermann; Hagemann, Martin; Fernie, Alisdair R.
- Trends in Plant Science, Vol. 15, Issue 6
The p33 auxiliary replicase protein of Cucumber necrosis virus targets peroxisomes and infection induces de novo peroxisome formation from the endoplasmic reticulum
journal, March 2014
- Rochon, D'Ann; Singh, Bhavana; Reade, Ron
- Virology, Vol. 452-453
A gene expression map of Arabidopsis thaliana development
journal, April 2005
- Schmid, Markus; Davison, Timothy S.; Henz, Stefan R.
- Nature Genetics, Vol. 37, Issue 5
How do plants achieve immunity? Defence without specialized immune cells
journal, January 2012
- Spoel, Steven H.; Dong, Xinnian
- Nature Reviews Immunology, Vol. 12, Issue 2
Peroxisomes take shape
journal, November 2013
- Smith, Jennifer J.; Aitchison, John D.
- Nature Reviews Molecular Cell Biology, Vol. 14, Issue 12
Chaperone and Protease Functions of LON Protease 2 Modulate the Peroxisomal Transition and Degradation with Autophagy
journal, February 2014
- Goto-Yamada, Shino; Mano, Shoji; Nakamori, Chihiro
- Plant and Cell Physiology, Vol. 55, Issue 3
The P34 Syringolide Elicitor Receptor Interacts with a Soybean Photorespiration Enzyme, NADH-Dependent Hydroxypyruvate Reductase
journal, December 2002
- Okinaka, Yasushi; Yang, Ching-Hong; Herman, Eliot
- Molecular Plant-Microbe Interactions, Vol. 15, Issue 12
Subcellular Targeting of Nine Calcium-Dependent Protein Kinase Isoforms from Arabidopsis
journal, July 2003
- Dammann, Christian; Ichida, Audrey; Hong, Bimei
- Plant Physiology, Vol. 132, Issue 4
Specification of the Peroxisome Targeting Signals Type 1 and Type 2 of Plant Peroxisomes by Bioinformatics Analyses
journal, June 2004
- Reumann, Sigrun
- Plant Physiology, Vol. 135, Issue 2
Identification and Characterization of a Stress-Inducible and a Constitutive Small Heat-Shock Protein Targeted to the Matrix of Plant Peroxisomes
journal, March 2006
- Ma, Changle; Haslbeck, Martin; Babujee, Lavanya
- Plant Physiology, Vol. 141, Issue 1
In-Depth Proteome Analysis of Arabidopsis Leaf Peroxisomes Combined with in Vivo Subcellular Targeting Verification Indicates Novel Metabolic and Regulatory Functions of Peroxisomes
journal, March 2009
- Reumann, Sigrun; Quan, Sheng; Aung, Kyaw
- Plant Physiology, Vol. 150, Issue 1
Proteome Analysis of Peroxisomes from Etiolated Arabidopsis Seedlings Identifies a Peroxisomal Protease Involved in -Oxidation and Development
journal, October 2013
- Quan, S.; Yang, P.; Cassin-Ross, G.
- PLANT PHYSIOLOGY, Vol. 163, Issue 4
Temporal Dynamics of Growth and Photosynthesis Suppression in Response to Jasmonate Signaling
journal, May 2014
- Attaran, Elham; Major, Ian T.; Cruz, Jeffrey A.
- Plant Physiology, Vol. 165, Issue 3
Systematic Phenotypic Screen of Arabidopsis Peroxisomal Mutants Identifies Proteins Involved in -Oxidation
journal, September 2014
- Cassin-Ross, G.; Hu, J.
- PLANT PHYSIOLOGY, Vol. 166, Issue 3
Plant eR Genes That Encode Photorespiratory Enzymes Confer Resistance against Disease
journal, December 2003
- Taler, Dvir; Galperin, Marjana; Benjamin, Ido
- The Plant Cell, Vol. 16, Issue 1
Microarray Expression Analyses of Arabidopsis Guard Cells and Isolation of a Recessive Abscisic Acid Hypersensitive Protein Phosphatase 2C Mutant
journal, February 2004
- Leonhardt, Nathalie; Kwak, June M.; Robert, Nadia
- The Plant Cell, Vol. 16, Issue 3
Plant Peroxisomes: Biogenesis and Function
journal, June 2012
- Hu, Jianping; Baker, Alison; Bartel, Bonnie
- The Plant Cell, Vol. 24, Issue 6
Disrupting Autophagy Restores Peroxisome Function to an Arabidopsis lon2 Mutant and Reveals a Role for the LON2 Protease in Peroxisomal Matrix Protein Degradation
journal, October 2013
- Farmer, Lisa M.; Rinaldi, Mauro A.; Young, Pierce G.
- The Plant Cell, Vol. 25, Issue 10
The emerging role of photorespiration and non-photorespiratory peroxisomal metabolism in pathogen defence
journal, March 2013
- Sørhagen, K.; Laxa, M.; Peterhänsel, C.
- Plant Biology, Vol. 15, Issue 4
Pre- and Postinvasion Defenses Both Contribute to Nonhost Resistance in Arabidopsis
journal, November 2005
- Lipka, V.
- Science, Vol. 310, Issue 5751
A Glucosinolate Metabolism Pathway in Living Plant Cells Mediates Broad-Spectrum Antifungal Defense
journal, January 2009
- Bednarek, P.; Pislewska-Bednarek, M.; Svatos, A.
- Science, Vol. 323, Issue 5910
Glucosinolate Metabolites Required for an Arabidopsis Innate Immune Response
journal, January 2009
- Clay, N. K.; Adio, A. M.; Denoux, C.
- Science, Vol. 323, Issue 5910
Peroxisome Assembly and Functional Diversity in Eukaryotic Microorganisms
journal, October 2012
- Pieuchot, Laurent; Jedd, Gregory
- Annual Review of Microbiology, Vol. 66, Issue 1
Jasmonate Passes Muster: A Receptor and Targets for the Defense Hormone
journal, June 2009
- Browse, John
- Annual Review of Plant Biology, Vol. 60, Issue 1
CAMTA 1 regulates drought responses in Arabidopsis thaliana
journal, January 2013
- Pandey, Neha; Ranjan, Alok; Pant, Poonam
- BMC Genomics, Vol. 14, Issue 1
Peroxisome Biogenesis and Function
journal, January 2009
- Kaur, Navneet; Reumann, Sigrun; Hu, Jianping
- The Arabidopsis Book, Vol. 7
Bioconductor : open software development for computational biology and bioinformatics
text, January 2004
- C., Gentleman, Robert; J., Carey, Vincent; M., Bates, Douglas
- BioMed Central
Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
journal, January 2004
- Smyth, Gordon K.
- Statistical Applications in Genetics and Molecular Biology, Vol. 3, Issue 1
A simple assay to identify peroxisomal proteins involved in 12-oxo-phytodienoic acid metabolism
journal, May 2014
- Cassin-Ross, Gaëlle; Hu, Jianping
- Plant Signaling & Behavior, Vol. 9, Issue 8
Rapid peroxisomal responses to ROS suggest an alternative mechanistic model for post-biogenesis peroxisomal life cycle in plants
journal, August 2009
- Mathur, Jaideep
- Plant Signaling & Behavior, Vol. 4, Issue 8
In vivo subcellular targeting analysis validates a novel peroxisome targeting signal type 2 and the peroxisomal localization of two proteins with putative functions in defense in Arabidopsis
journal, February 2010
- Quan, Sheng; Switzenberg, Robert; Reumann, Sigrun
- Plant Signaling & Behavior, Vol. 5, Issue 2
Nonhost resistance toMagnaporthe oryzaeinArabidopsis thaliana
journal, June 2010
- Maeda, Kana; Houjyou, Yasunari; Komatsu, Takuma
- Plant Signaling & Behavior, Vol. 5, Issue 6
Works referencing / citing this record:
Exploring natural variation of photosynthesis in a site-specific manner: evolution, progress, and prospects
journal, June 2019
- Dehigaspitiya, Prabuddha; Milham, Paul; Ash, Gavin J.
- Planta, Vol. 250, Issue 4
Perspectives for a better understanding of the metabolic integration of photorespiration within a complex plant primary metabolism network
journal, April 2016
- Hodges, Michael; Dellero, Younès; Keech, Olivier
- Journal of Experimental Botany, Vol. 67, Issue 10
Conserved and differential transcriptional responses of peroxisome associated pathways to drought, dehydration and ABA
journal, July 2018
- Ebeed, Heba T.; Stevenson, Sean R.; Cuming, Andrew C.
- Journal of Experimental Botany, Vol. 69, Issue 20
Photorespiratory serine hydroxymethyltransferase 1 activity impacts abiotic stress tolerance and stomatal closure
journal, May 2019
- Liu, Yanpei; Mauve, Caroline; Lamothe‐Sibold, Marlène
- Plant, Cell & Environment, Vol. 42, Issue 9
Impact of heat and drought stress on peroxisome proliferation in quinoa
journal, June 2019
- Hinojosa, Leonardo; Sanad, Marwa N. M. E.; Jarvis, David E.
- The Plant Journal, Vol. 99, Issue 6
Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves
journal, February 2018
- Abraham, Paul E.; Garcia, Benjamin J.; Gunter, Lee E.
- PLOS ONE, Vol. 13, Issue 2
Faster Removal of 2-Phosphoglycolate through Photorespiration Improves Abiotic Stress Tolerance of Arabidopsis
journal, December 2019
- Timm, Stefan; Woitschach, Franziska; Heise, Carolin
- Plants, Vol. 8, Issue 12
Plant peroxisomes: A nitro-oxidative cocktail
journal, April 2017
- Corpas, Francisco J.; Barroso, Juan B.; Palma, José M.
- Redox Biology, Vol. 11
Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves
journal, February 2018
- Abraham, Paul E.; Garcia, Benjamin J.; Gunter, Lee E.
- PLOS ONE, Vol. 13, Issue 2
The RabGAP Gene Family in Tomato (Solanum lycopersicum) and Wild Relatives: Identification, Interaction Networks, and Transcriptional Analysis during Plant Development and in Response to Salt Stress
journal, August 2019
- Madrid-Espinoza,
- Genes, Vol. 10, Issue 9