Cell wall composition and biomass recalcitrance differences within a genotypically diverse set of Brachypodium distachyon inbred lines
Abstract
Brachypodium distachyon (Brachypodium) has emerged as a useful model system for studying traits unique to graminaceous species including bioenergy crop grasses owing to its amenability to laboratory experimentation and the availability of extensive genetic and germplasm resources. Considerable natural variation has been uncovered for a variety of traits including flowering time, vernalization responsiveness, and above-ground growth characteristics. However, cell wall composition differences remain underexplored. Therefore, we assessed cell wall-related traits relevant to biomass conversion to biofuels in seven Brachypodium inbred lines that were chosen based on their high level of genotypic diversity as well as available genome sequences and recombinant inbred line (RIL) populations. Senesced stems plus leaf sheaths from these lines exhibited significant differences in acetyl bromide soluble lignin (ABSL), cell wall polysaccharide-derived sugars, hydroxycinnamates content, and syringyl:guaiacyl:p-hydroxyphenyl (S:G:H) lignin ratios. Free glucose, sucrose, and starch content also differed significantly in senesced stems, as did the amounts of sugars released from cell wall polysaccharides (digestibility) upon exposure to a panel of thermochemical pretreatments followed by hydrolytic enzymatic digestion. Correlations were identified between inbred line lignin compositions and plant growth characteristics such as biomass accumulation and heading date (HD), and between amounts of cell wall polysaccharides and biomass digestibility. Finally,more »
- Authors:
-
- Illinois State Univ., Normal, IL (United States). School of Biological Science; Univ. of Wisconsin-Madison, Madison, WI (United States). U.S. Dept. of Energy Great Lakes Bioenergy Research Center
- Univ. of Minnesota, St. Paul, MN (United States). Dept. of Agronomy and Plant Genetics; United States Dept. of Agriculture, Agricultural Research Service, St. Paul, MN (United States). Plant Science Research Unit
- Michigan State Univ., East Lansing, MI (United States). U.S. Dept. of Energy Great Lakes Bioenergy Research Center
- Univ. of Wisconsin-Madison, Madison, WI (United States). U.S. Dept. of Energy Great Lakes Bioenergy Research Center
- Univ. of Wisconsin-Madison, Madison, WI (United States). U.S. Dept. of Energy Great Lakes Bioenergy Research Center; Dept. of Biochemistry
- Illinois State Univ., Normal, IL (United States). School of Biological Sciences; Univ. of Wisconsin-Madison, Madison, WI (United States). U.S. Dept. of Energy Great Lakes Bioenergy Research Center
- Publication Date:
- Research Org.:
- Michigan State Univ., East Lansing, MI (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1285953
- Grant/Contract Number:
- FC02-07ER64494
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Plant Science
- Additional Journal Information:
- Journal Volume: 7; Journal ID: ISSN 1664-462X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 09 BIOMASS FUELS; bioenergy; grass; polysaccharide; hemicellulose; lignin; digestibility; vernalization; Pooideae; bromide spectrophotometric method; arabidopsis-thaliana; lignin concentration; natural variation; flowering time; model system; saccharification; conversion; quality
Citation Formats
Cass, Cynthia L., Lavell, Anastasiya A., Santoro, Nicholas, Foster, Cliff E., Karlen, Steven D., Smith, Rebecca A., Ralph, John, Garvin, David F., and Sedbrook, John C. Cell wall composition and biomass recalcitrance differences within a genotypically diverse set of Brachypodium distachyon inbred lines. United States: N. p., 2016.
Web. doi:10.3389/fpls.2016.00708.
Cass, Cynthia L., Lavell, Anastasiya A., Santoro, Nicholas, Foster, Cliff E., Karlen, Steven D., Smith, Rebecca A., Ralph, John, Garvin, David F., & Sedbrook, John C. Cell wall composition and biomass recalcitrance differences within a genotypically diverse set of Brachypodium distachyon inbred lines. United States. https://doi.org/10.3389/fpls.2016.00708
Cass, Cynthia L., Lavell, Anastasiya A., Santoro, Nicholas, Foster, Cliff E., Karlen, Steven D., Smith, Rebecca A., Ralph, John, Garvin, David F., and Sedbrook, John C. Thu .
"Cell wall composition and biomass recalcitrance differences within a genotypically diverse set of Brachypodium distachyon inbred lines". United States. https://doi.org/10.3389/fpls.2016.00708. https://www.osti.gov/servlets/purl/1285953.
@article{osti_1285953,
title = {Cell wall composition and biomass recalcitrance differences within a genotypically diverse set of Brachypodium distachyon inbred lines},
author = {Cass, Cynthia L. and Lavell, Anastasiya A. and Santoro, Nicholas and Foster, Cliff E. and Karlen, Steven D. and Smith, Rebecca A. and Ralph, John and Garvin, David F. and Sedbrook, John C.},
abstractNote = {Brachypodium distachyon (Brachypodium) has emerged as a useful model system for studying traits unique to graminaceous species including bioenergy crop grasses owing to its amenability to laboratory experimentation and the availability of extensive genetic and germplasm resources. Considerable natural variation has been uncovered for a variety of traits including flowering time, vernalization responsiveness, and above-ground growth characteristics. However, cell wall composition differences remain underexplored. Therefore, we assessed cell wall-related traits relevant to biomass conversion to biofuels in seven Brachypodium inbred lines that were chosen based on their high level of genotypic diversity as well as available genome sequences and recombinant inbred line (RIL) populations. Senesced stems plus leaf sheaths from these lines exhibited significant differences in acetyl bromide soluble lignin (ABSL), cell wall polysaccharide-derived sugars, hydroxycinnamates content, and syringyl:guaiacyl:p-hydroxyphenyl (S:G:H) lignin ratios. Free glucose, sucrose, and starch content also differed significantly in senesced stems, as did the amounts of sugars released from cell wall polysaccharides (digestibility) upon exposure to a panel of thermochemical pretreatments followed by hydrolytic enzymatic digestion. Correlations were identified between inbred line lignin compositions and plant growth characteristics such as biomass accumulation and heading date (HD), and between amounts of cell wall polysaccharides and biomass digestibility. Finally, stem cell wall p-coumarate and ferulate contents and free-sugars content changed significantly with increased duration of vernalization for some inbred lines. Taken together, these results show that Brachypodium displays substantial phenotypic variation with respect to cell wall composition and biomass digestibility, with some compositional differences correlating with growth characteristics. Moreover, besides influencing HD and biomass accumulation, vernalization was found to affect cell wall composition and free sugars accumulation in some Brachypodium inbred lines, suggesting genetic differences in how vernalization affects carbon flux to polysaccharides. Lastly, the availability of related RIL populations will allow for the genetic and molecular dissection of this natural variation, the knowledge of which may inform ways to genetically improve bioenergy crop grasses.},
doi = {10.3389/fpls.2016.00708},
journal = {Frontiers in Plant Science},
number = ,
volume = 7,
place = {United States},
year = {Thu May 26 00:00:00 EDT 2016},
month = {Thu May 26 00:00:00 EDT 2016}
}
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Cited by: 12 works
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Figures / Tables:
FIGURE 1: Growth habits of Brachypodium distachyon inbred lines. Representative images of non-vernalized plants from lines (A) Bd21, (B) Bd30-1, (C) Bd3-1 (pictures taken 44 days after planting), and (D) Bd2-3 (picture taken 52 days after planting), as well as vernalized plants from lines (E) Bd1-1 and (F) Bd18-1 (picturesmore »
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Natural Variation of Flowering Time and Vernalization Responsiveness in Brachypodium distachyon
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The structure, function, and biosynthesis of plant cell wall pectic polysaccharides
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Non-structural carbohydrate partitioning in grass stems: a target to increase yield stability, stress tolerance, and biofuel production
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Effects of PHENYLALANINE AMMONIA LYASE ( PAL ) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses in Brachypodium
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Brachypodium as a Model for the Grasses: Today and the Future
journal, July 2011
- Brkljacic, Jelena; Grotewold, Erich; Scholl, Randy
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Interaction of Photoperiod and Vernalization Determines Flowering Time of Brachypodium distachyon
journal, December 2013
- Ream, Thomas S.; Woods, Daniel P.; Schwartz, Christopher J.
- Plant Physiology, Vol. 164, Issue 2
Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass Are Independent of Those for Lignin Abundance in a Maize Recombinant Inbred Population
journal, June 2014
- Penning, Bryan W.; Sykes, Robert W.; Babcock, Nicholas C.
- Plant Physiology, Vol. 165, Issue 4
Natural variation of drought response in Brachypodium distachyon
journal, October 2010
- Luo, Na; Liu, Jianxiu; Yu, Xiaoqing
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Exploiting the Brachypodium Tool Box in cereal and grass research
journal, May 2011
- Mur, Luis A. J.; Allainguillaume, Joel; Catalán, Pilar
- New Phytologist, Vol. 191, Issue 2
CGR2 and CGR3 have critical overlapping roles in pectin methylesterification and plant growth in Arabidopsis thaliana
journal, March 2015
- Kim, Sang-Jin; Held, Michael A.; Zemelis, Starla
- The Plant Journal, Vol. 82, Issue 2
Hemicelluloses
journal, June 2010
- Scheller, Henrik Vibe; Ulvskov, Peter
- Annual Review of Plant Biology, Vol. 61, Issue 1
The Biology of Arabinogalactan Proteins
journal, June 2007
- Seifert, Georg J.; Roberts, Keith
- Annual Review of Plant Biology, Vol. 58, Issue 1
Selection and phenotypic characterization of a core collection of Brachypodium distachyon inbred lines
journal, January 2014
- Tyler, Ludmila; Fangel, Jonatan U.; Fagerström, Alexandra
- BMC Plant Biology, Vol. 14, Issue 1
Analysis of saccharification in Brachypodium distachyon stems under mild conditions of hydrolysis
journal, January 2008
- Gomez, Leonardo D.; Bristow, Jennifer K.; Statham, Emily R.
- Biotechnology for Biofuels, Vol. 1, Issue 1
Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality
journal, January 2012
- Lee, Scott J.; Warnick, Thomas A.; Pattathil, Sivakumar
- Biotechnology for Biofuels, Vol. 5, Issue 1
Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana
journal, January 2013
- Van Acker, Rebecca; Vanholme, Ruben; Storme, Véronique
- Biotechnology for Biofuels, Vol. 6, Article No. 46
Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
journal, June 2012
- Cui, Yu; Lee, Mi Yeon; Huo, Naxin
- PLoS ONE, Vol. 7, Issue 6
Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection
journal, September 2012
- Bragg, Jennifer N.; Wu, Jiajie; Gordon, Sean P.
- PLoS ONE, Vol. 7, Issue 9
PHYTOCHROME C Is an Essential Light Receptor for Photoperiodic Flowering in the Temperate Grass, Brachypodium distachyon
journal, July 2014
- Woods, Daniel P.; Ream, Thomas S.; Minevich, Gregory
- Genetics, Vol. 198, Issue 1
Development of Genetic and Genomic Research Resources for , a New Model System for Grass Crop Research
journal, January 2008
- Garvin, David F.; Gu, Yong-Qiang; Hasterok, Robert
- Crop Science, Vol. 48, Issue Supplement_1
Arabinogalactan-proteins and the research challenges for these enigmatic plant cell surface proteoglycans
journal, January 2012
- Tan, Li; Showalter, Allan M.; Egelund, Jack
- Frontiers in Plant Science, Vol. 3
Cell wall composition throughout development for the model grass Brachypodium distachyon
journal, January 2012
- Rancour, David M.; Marita, Jane M.; Hatfield, Ronald D.
- Frontiers in Plant Science, Vol. 3
Roles of pectin in biomass yield and processing for biofuels
journal, January 2013
- Xiao, Chaowen; Anderson, Charles T.
- Frontiers in Plant Science, Vol. 4
Memory of the vernalized state in plants including the model grass Brachypodium distachyon
journal, March 2014
- Woods, Daniel P.; Ream, Thomas S.; Amasino, Richard M.
- Frontiers in Plant Science, Vol. 5
Pushing the boundaries of resistance: insights from Brachypodium-rust interactions
journal, July 2015
- Figueroa, Melania; Castell-Miller, Claudia V.; Li, Feng
- Frontiers in Plant Science, Vol. 6
Comprehensive Compositional Analysis of Plant Cell Walls (Lignocellulosic biomass) Part II: Carbohydrates
journal, March 2010
- Foster, Cliff E.; Martin, Tina M.; Pauly, Markus
- Journal of Visualized Experiments, Issue 37
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