On the applicability of surrogate-based MCMC-Bayesian inversion to the Community Land Model: Case studies at Flux tower sites
Abstract
The Community Land Model (CLM) has been widely used in climate and Earth system modeling. Accurate estimation of model parameters is needed for reliable model simulations and predictions under current and future conditions, respectively. In our previous work, a subset of hydrological parameters has been identified to have significant impact on surface energy fluxes at selected flux tower sites based on parameter screening and sensitivity analysis, which indicate that the parameters could potentially be estimated from surface flux observations at the towers. To date, such estimates do not exist. In this paper, we assess the feasibility of applying a Bayesian model calibration technique to estimate CLM parameters at selected flux tower sites under various site conditions. The parameters are estimated as a joint probability density function (PDF) that provides estimates of uncertainty of the parameters being inverted, conditional on climatologically average latent heat fluxes derived from observations. We find that the simulated mean latent heat fluxes from CLM using the calibrated parameters are generally improved at all sites when compared to those obtained with CLM simulations using default parameter sets. Further, our calibration method also results in credibility bounds around the simulated mean fluxes which bracket the measured data. Themore »
- Authors:
-
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
- Sandia National Lab. (SNL-CA), Livermore, CA (United States)
- Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
- Publication Date:
- Research Org.:
- Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
- Sponsoring Org.:
- USDOE National Nuclear Security Administration (NNSA)
- OSTI Identifier:
- 1259834
- Alternate Identifier(s):
- OSTI ID: 1262239
- Report Number(s):
- SAND-2015-7946J; SAND-2016-5746J
Journal ID: ISSN 2169-897X; 603839
- Grant/Contract Number:
- AC04-94AL85000
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Geophysical Research: Atmospheres
- Additional Journal Information:
- Journal Name: Journal of Geophysical Research: Atmospheres; Journal ID: ISSN 2169-897X
- Publisher:
- American Geophysical Union
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; 58 GEOSCIENCES; Community Land Model; MCMC-Bayesian; surrogate; flux tower
Citation Formats
Huang, Maoyi, Ray, Jaideep, Hou, Zhangshuan, Ren, Huiying, Liu, Ying, and Swiler, Laura. On the applicability of surrogate-based MCMC-Bayesian inversion to the Community Land Model: Case studies at Flux tower sites. United States: N. p., 2016.
Web. doi:10.1002/2015jd024339.
Huang, Maoyi, Ray, Jaideep, Hou, Zhangshuan, Ren, Huiying, Liu, Ying, & Swiler, Laura. On the applicability of surrogate-based MCMC-Bayesian inversion to the Community Land Model: Case studies at Flux tower sites. United States. https://doi.org/10.1002/2015jd024339
Huang, Maoyi, Ray, Jaideep, Hou, Zhangshuan, Ren, Huiying, Liu, Ying, and Swiler, Laura. Wed .
"On the applicability of surrogate-based MCMC-Bayesian inversion to the Community Land Model: Case studies at Flux tower sites". United States. https://doi.org/10.1002/2015jd024339. https://www.osti.gov/servlets/purl/1259834.
@article{osti_1259834,
title = {On the applicability of surrogate-based MCMC-Bayesian inversion to the Community Land Model: Case studies at Flux tower sites},
author = {Huang, Maoyi and Ray, Jaideep and Hou, Zhangshuan and Ren, Huiying and Liu, Ying and Swiler, Laura},
abstractNote = {The Community Land Model (CLM) has been widely used in climate and Earth system modeling. Accurate estimation of model parameters is needed for reliable model simulations and predictions under current and future conditions, respectively. In our previous work, a subset of hydrological parameters has been identified to have significant impact on surface energy fluxes at selected flux tower sites based on parameter screening and sensitivity analysis, which indicate that the parameters could potentially be estimated from surface flux observations at the towers. To date, such estimates do not exist. In this paper, we assess the feasibility of applying a Bayesian model calibration technique to estimate CLM parameters at selected flux tower sites under various site conditions. The parameters are estimated as a joint probability density function (PDF) that provides estimates of uncertainty of the parameters being inverted, conditional on climatologically average latent heat fluxes derived from observations. We find that the simulated mean latent heat fluxes from CLM using the calibrated parameters are generally improved at all sites when compared to those obtained with CLM simulations using default parameter sets. Further, our calibration method also results in credibility bounds around the simulated mean fluxes which bracket the measured data. The modes (or maximum a posteriori values) and 95% credibility intervals of the site-specific posterior PDFs are tabulated as suggested parameter values for each site. As a result, analysis of relationships between the posterior PDFs and site conditions suggests that the parameter values are likely correlated with the plant functional type, which needs to be confirmed in future studies by extending the approach to more sites.},
doi = {10.1002/2015jd024339},
journal = {Journal of Geophysical Research: Atmospheres},
number = ,
volume = ,
place = {United States},
year = {Wed Jun 01 00:00:00 EDT 2016},
month = {Wed Jun 01 00:00:00 EDT 2016}
}
Web of Science
Works referenced in this record:
A trust-region framework for managing the use of approximation models in optimization
journal, February 1998
- Alexandrov, N. M.; Dennis, J. E.; Lewis, R. M.
- Structural Optimization, Vol. 15, Issue 1
Changes in Soil Microbial Community Structure in a Tallgrass Prairie Chronosequence
journal, January 2005
- Allison, Victoria J.; Miller, R. Michael; Jastrow, Julie D.
- Soil Science Society of America Journal, Vol. 69, Issue 5
A sensitivity analysis of the land-surface scheme JULES conducted for three forest biomes: Biophysical parameters, model processes, and meteorological driving data: SENSITIVITY ANALYSIS OF LAND-MODEL JULES
journal, March 2006
- Alton, P.; Mercado, L.; North, P.
- Global Biogeochemical Cycles, Vol. 20, Issue 1
Modeling CO2 and water vapor exchange of a temperate broadleaved forest across hourly to decadal time scales
journal, August 2001
- Baldocchi, Dennis D.; Wilson, Kell B.
- Ecological Modelling, Vol. 142, Issue 1-2
Parameter sensitivity analysis for different complexity land surface models using multicriteria methods
journal, January 2006
- Bastidas, L. A.; Hogue, T. S.; Sorooshian, S.
- Journal of Geophysical Research, Vol. 111, Issue D20
Crop physiology calibration in the CLM
journal, January 2015
- Bilionis, I.; Drewniak, B. A.; Constantinescu, E. M.
- Geoscientific Model Development, Vol. 8, Issue 4
Improving canopy processes in the Community Land Model version 4 (CLM4) using global flux fields empirically inferred from FLUXNET data
journal, January 2011
- Bonan, Gordon B.; Lawrence, Peter J.; Oleson, Keith W.
- Journal of Geophysical Research, Vol. 116, Issue G2
Empirical equations for some soil hydraulic properties
journal, August 1978
- Clapp, Roger B.; Hornberger, George M.
- Water Resources Research, Vol. 14, Issue 4
Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review
journal, June 1996
- Cowles, Mary Kathryn; Carlin, Bradley P.
- Journal of the American Statistical Association, Vol. 91, Issue 434
Monte Carlo sensitivity analysis of land surface parameters using the Variable Infiltration Capacity model
journal, January 2007
- Demaria, Eleonora M.; Nijssen, Bart; Wagener, Thorsten
- Journal of Geophysical Research, Vol. 112, Issue D11
Formulations for Surrogate-Based Optimization with Data Fit, Multifidelity, and Reduced-Order Models
conference, June 2012
- Eldred, Michael; Dunlavy, Daniel
- 11th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conference
Spatiotemporal Variations in Growing Season Exchanges of CO 2 , H 2 O, and Sensible Heat in Agricultural Fields of the Southern Great Plains
journal, October 2007
- Fischer, Marc L.; Billesbach, David P.; Berry, Joseph A.
- Earth Interactions, Vol. 11, Issue 17
Recent advances in surrogate-based optimization
journal, January 2009
- Forrester, Alexander I. J.; Keane, Andy J.
- Progress in Aerospace Sciences, Vol. 45, Issue 1-3
Multivariate Adaptive Regression Splines
journal, March 1991
- Friedman, Jerome H.
- The Annals of Statistics, Vol. 19, Issue 1
Stepwise sensitivity analysis from qualitative to quantitative: Application to the terrestrial hydrological modeling of a Conjunctive Surface-Subsurface Process (CSSP) land surface model: Stepwise Sensitivity Analysis of LSMs
journal, May 2015
- Gan, Yanjun; Liang, Xin-Zhong; Duan, Qingyun
- Journal of Advances in Modeling Earth Systems, Vol. 7, Issue 2
Estimating Clear-Sky Regional Surface Fluxes in the Southern Great Plains Atmospheric Radiation Measurement Site with Ground Measurements and Satellite Observations
journal, January 1998
- Gao, W.; Coulter, R. L.; Lesht, B. M.
- Journal of Applied Meteorology, Vol. 37, Issue 1
Variable-Complexity Multidisciplinary Design Optimization Using Parallel Computers
book, January 1995
- Giunta, Anthony A.; Balabanov, Vladimir; Burgee, Susan
- Computational Mechanics ’95
Ensemble of surrogates
journal, September 2006
- Goel, Tushar; Haftka, Raphael T.; Shyy, Wei
- Structural and Multidisciplinary Optimization, Vol. 33, Issue 3
Use of eigendecomposition in a parameter sensitivity analysis of the Community Land Model: SENSITIVITY OF A LAND SURFACE MODEL
journal, June 2013
- Göhler, M.; Mai, J.; Cuntz, M.
- Journal of Geophysical Research: Biogeosciences, Vol. 118, Issue 2
Multi-objective parameter optimization of common land model using adaptive surrogate modeling
journal, January 2015
- Gong, W.; Duan, Q.; Li, J.
- Hydrology and Earth System Sciences, Vol. 19, Issue 5
Direct and indirect effects of atmospheric conditions and soil moisture on surface energy partitioning revealed by a prolonged drought at a temperate forest site
journal, January 2006
- Gu, Lianhong; Meyers, Tilden; Pallardy, Stephen G.
- Journal of Geophysical Research, Vol. 111, Issue D16
Model performance, model robustness, and model fitness scores: A new method for identifying good land-surface models
journal, January 2008
- Gulden, Lindsey E.; Rosero, Enrique; Yang, Zong-Liang
- Geophysical Research Letters, Vol. 35, Issue 11
DRAM: Efficient adaptive MCMC
journal, December 2006
- Haario, Heikki; Laine, Marko; Mira, Antonietta
- Statistics and Computing, Vol. 16, Issue 4
The Elements of Statistical Learning
book, January 2009
- Hastie, Trevor; Tibshirani, Robert; Friedman, Jerome
- Springer Series in Statistics
The Project for Intercomparison of Land Surface Parameterization Schemes (PILPS): Phases 2 and 3
journal, April 1995
- Henderson-Sellers, A.; Pitman, A. J.; Love, P. K.
- Bulletin of the American Meteorological Society, Vol. 76, Issue 4
Seasonal patterns and environmental control of carbon dioxide and water vapour exchange in an ecotonal boreal forest
journal, December 1999
- Hollinger, D. Y.; Goltz, S. M.; Davidson, E. A.
- Global Change Biology, Vol. 5, Issue 8
Sensitivity of surface flux simulations to hydrologic parameters based on an uncertainty quantification framework applied to the Community Land Model: UNCERTAINTY QUANTIFICATION FOR CLM4
journal, August 2012
- Hou, Zhangshuan; Huang, Maoyi; Leung, L. Ruby
- Journal of Geophysical Research: Atmospheres, Vol. 117, Issue D15
Uncertainty Analysis of Runoff Simulations and Parameter Identifiability in the Community Land Model: Evidence from MOPEX Basins
journal, December 2013
- Huang, Maoyi; Hou, Zhangshuan; Leung, L. Ruby
- Journal of Hydrometeorology, Vol. 14, Issue 6
Estimation of ECHAM5 climate model closure parameters with adaptive MCMC
journal, January 2010
- Järvinen, H.; Räisänen, P.; Laine, M.
- Atmospheric Chemistry and Physics, Vol. 10, Issue 20
Parameterization improvements and functional and structural advances in Version 4 of the Community Land Model
journal, January 2011
- Lawrence, David M.; Oleson, Keith W.; Flanner, Mark G.
- Journal of Advances in Modeling Earth Systems, Vol. 3, Issue 3
Intercomparison of land-surface parameterization schemes: sensitivity of surface energy and water fluxes to model parameters
journal, August 2003
- Liang, Xu; Guo, Jianzhong
- Journal of Hydrology, Vol. 279, Issue 1-4
Improving parameter estimation and water table depth simulation in a land surface model using GRACE water storage and estimated base flow data: PARAMETER ESTIMATION USING GRACE DATA
journal, May 2010
- Lo, Min-Hui; Famiglietti, James S.; Yeh, P. J. -F.
- Water Resources Research, Vol. 46, Issue 5
Mature semiarid chaparral ecosystems can be a significant sink for atmospheric carbon dioxide
journal, February 2007
- Luo, Hongyan; Oechel, Walter C.; Hastings, Steven J.
- Global Change Biology, Vol. 13, Issue 2
A framework for benchmarking land models
journal, January 2012
- Luo, Y. Q.; Randerson, J. T.; Abramowitz, G.
- Biogeosciences, Vol. 9, Issue 10
CH 4 parameter estimation in CLM4.5bgc using surrogate global optimization
journal, January 2015
- Müller, J.; Paudel, R.; Shoemaker, C. A.
- Geoscientific Model Development Discussions, Vol. 8, Issue 1
Estimating components of forest evapotranspiration: A footprint approach for scaling sap flux measurements
journal, October 2008
- Oishi, A. Christopher; Oren, Ram; Stoy, Paul C.
- Agricultural and Forest Meteorology, Vol. 148, Issue 11
Estimating the uncertainty in annual net ecosystem carbon exchange: spatial variation in turbulent fluxes and sampling errors in eddy-covariance measurements
journal, May 2006
- Oren, Ram; Hsieh, Cheng-I; Stoy, Paul
- Global Change Biology, Vol. 12, Issue 5
A reduced-order modeling approach to represent subgrid-scale hydrological dynamics for land-surface simulations: application in a polygonal tundra landscape
journal, January 2014
- Pau, G. S. H.; Bisht, G.; Riley, W. J.
- Geoscientific Model Development, Vol. 7, Issue 5
Sensitivity, uncertainty and time dependence of parameters in a complex land surface model
journal, February 2008
- Prihodko, L.; Denning, A. S.; Hanan, N. P.
- Agricultural and Forest Meteorology, Vol. 148, Issue 2
A Modeling Study of Irrigation Effects on Surface Fluxes and Land–Air–Cloud Interactions in the Southern Great Plains
journal, June 2013
- Qian, Yun; Huang, Maoyi; Yang, Ben
- Journal of Hydrometeorology, Vol. 14, Issue 3
Bayesian Calibration of the Community Land Model Using Surrogates
journal, January 2015
- Ray, J.; Hou, Z.; Huang, M.
- SIAM/ASA Journal on Uncertainty Quantification, Vol. 3, Issue 1
Review of surrogate modeling in water resources: REVIEW
journal, July 2012
- Razavi, Saman; Tolson, Bryan A.; Burn, Donald H.
- Water Resources Research, Vol. 48, Issue 7
A Stochastic Radial Basis Function Method for the Global Optimization of Expensive Functions
journal, November 2007
- Regis, Rommel G.; Shoemaker, Christine A.
- INFORMS Journal on Computing, Vol. 19, Issue 4
Classification of hydrological parameter sensitivity and evaluation of parameter transferability across 431 US MOPEX basins
journal, May 2016
- Ren, Huiying; Hou, Zhangshuan; Huang, Maoyi
- Journal of Hydrology, Vol. 536
Quantifying parameter sensitivity, interaction, and transferability in hydrologically enhanced versions of the Noah land surface model over transition zones during the warm season
journal, January 2010
- Rosero, Enrique; Yang, Zong-Liang; Wagener, Thorsten
- Journal of Geophysical Research, Vol. 115, Issue D3
Dimensionality Reduction for Complex Models via Bayesian Compressive Sensing
journal, January 2014
- Sargsyan, Khachik; Safta, Cosmin; Najm, Habib N.
- International Journal for Uncertainty Quantification, Vol. 4, Issue 1
A model-data intercomparison of CO 2 exchange across North America: Results from the North American Carbon Program site synthesis
journal, January 2010
- Schwalm, Christopher R.; Williams, Christopher A.; Schaefer, Kevin
- Journal of Geophysical Research, Vol. 115
GA : A Package for Genetic Algorithms in R
journal, January 2013
- Scrucca, Luca
- Journal of Statistical Software, Vol. 53, Issue 4
Efficient MCMC for Climate Model Parameter Estimation: Parallel Adaptive Chains and Early Rejection
journal, September 2012
- Solonen, Antti; Ollinaho, Pirkka; Laine, Marko
- Bayesian Analysis, Vol. 7, Issue 3
An evaluation of models for partitioning eddy covariance-measured net ecosystem exchange into photosynthesis and respiration
journal, December 2006
- Stoy, Paul C.; Katul, Gabriel G.; Siqueira, Mario B. S.
- Agricultural and Forest Meteorology, Vol. 141, Issue 1
Role of vegetation in determining carbon sequestration along ecological succession in the southeastern United States
journal, June 2008
- Stoy, Paul C.; Katul, Gabriel G.; Siqueira, Mario B. S.
- Global Change Biology, Vol. 14, Issue 6
Inverse modeling of hydrologic parameters using surface flux and runoff observations in the Community Land Model
journal, January 2013
- Sun, Y.; Hou, Z.; Huang, M.
- Hydrology and Earth System Sciences, Vol. 17, Issue 12
Coupling of carbon dioxide and water vapor exchanges of irrigated and rainfed maize–soybean cropping systems and water productivity
journal, April 2010
- Suyker, Andrew E.; Verma, Shashi B.
- Agricultural and Forest Meteorology, Vol. 150, Issue 4
Interannual variability in net CO2 exchange of a native tallgrass prairie
journal, February 2003
- Suyker, Andrew E.; Verma, Shashi B.; Burba, George G.
- Global Change Biology, Vol. 9, Issue 2
A land surface soil moisture data assimilation framework in consideration of the model subgrid-scale heterogeneity and soil water thawing and freezing
journal, July 2008
- Tian, XiangJun; Xie, ZhengHui
- Science in China Series D: Earth Sciences, Vol. 51, Issue 7
Factors controlling CO 2 exchange on timescales from hourly to decadal at Harvard Forest
journal, January 2007
- Urbanski, S.; Barford, C.; Wofsy, S.
- Journal of Geophysical Research, Vol. 112, Issue G2
Annual carbon dioxide exchange in irrigated and rainfed maize-based agroecosystems
journal, July 2005
- Verma, Shashi B.; Dobermann, Achim; Cassman, Kenneth G.
- Agricultural and Forest Meteorology, Vol. 131, Issue 1-2
Special Section on Multidisciplinary Design Optimization: Metamodeling in Multidisciplinary Design Optimization: How Far Have We Really Come?
journal, April 2014
- Viana, Felipe A. C.; Simpson, Timothy W.; Balabanov, Vladimir
- AIAA Journal, Vol. 52, Issue 4
Adaptive Response Surface Method - a Global Optimization Scheme for Approximation-Based Design Problems
journal, August 2001
- Gary Wang, G.; Dong, Zuomin; Aitchison, Peter
- Engineering Optimization, Vol. 33, Issue 6
Parameterization and Sensitivity Analysis of the BIOME–BGC Terrestrial Ecosystem Model: Net Primary Production Controls
journal, January 2000
- White, Michael A.; Thornton, Peter E.; Running, Steven W.
- Earth Interactions, Vol. 4, Issue 3
Improving land surface models with FLUXNET data
journal, January 2009
- Williams, M.; Richardson, A. D.; Reichstein, M.
- Biogeosciences, Vol. 6, Issue 7
Energy balance closure at FLUXNET sites
journal, December 2002
- Wilson, Kell; Goldstein, Allen; Falge, Eva
- Agricultural and Forest Meteorology, Vol. 113, Issue 1-4
Environmental controls on water use efficiency during severe drought in an Ozark Forest in Missouri, USA: ENVIRONMENTAL CONTROL ON WATER USE EFFICIENCY
journal, December 2009
- Yang, Bai; Pallardy, Stephen G.; Meyers, Tilden P.
- Global Change Biology, Vol. 16, Issue 8
Calibration of the Crop model in the Community Land Model
journal, January 2013
- Zeng, X.; Drewniak, B. A.; Constantinescu, E. M.
- Geoscientific Model Development Discussions, Vol. 6, Issue 1
Sensitivity analysis and quantification of uncertainty for isotopic mixing relationships in carbon cycle research
journal, January 2006
- Zobitz, J. M.; Keener, J. P.; Schnyder, H.
- Agricultural and Forest Meteorology, Vol. 136, Issue 1-2
Works referencing / citing this record:
Efficient surrogate modeling methods for large-scale Earth system models based on machine-learning techniques
journal, January 2019
- Lu, Dan; Ricciuto, Daniel
- Geoscientific Model Development, Vol. 12, Issue 5
Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation
journal, January 2018
- Fer, Istem; Kelly, Ryan; Moorcroft, Paul R.
- Biogeosciences, Vol. 15, Issue 19