Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism
Abstract
© 2016 Bouskill, Wood, Baran, Ye, Bowen, Lim, Zhou, Van Nostrand, Nico, Northen, Silver and Brodie. Global climate models predict a future of increased severity of drought in many tropical forests. Soil microbes are central to the balance of these systems as sources or sinks of atmospheric carbon (C), yet how they respond metabolically to drought is not well-understood. We simulated drought in the typically aseasonal Luquillo Experimental Forest, Puerto Rico, by intercepting precipitation falling through the fo rest canopy. This approach reduced soil moisture by 13% and water potential by 0.14 MPa (from -0.2 to -0.34). Previous results from this experiment have demonstrated that the diversity and composition of these soil microbial communities are sensitive to even small changes in soil water. Here, we show prolonged drought significantly alters the functional potential of the community and provokes a clear osmotic stress response, including the production of compatible solutes that increase intracellular C demand. Subsequently, a microbial population emerges with a greater capacity for extracellular enzyme production targeting macromolecular carbon. Significantly, some of these drought-induced functional shifts in the soil microbiota are attenuated by prior exposure to a short-term drought suggesting that acclimation may occur despite a lack of longer-termmore »
- Authors:
-
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth Sciences Division
- USDA Forest Service, Rio Piedras, PR (United States). Institute of Tropical Forestry; Puerto Rican Conservation Foundation, San Juan, PR (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Life Sciences Division
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth Sciences Division; Univ. of Oklahoma, Norman, OK (United States); Tsinghua Univ., Beijing (China)
- Univ. of Oklahoma, Norman, OK (United States)
- Univ. of California, Berkeley, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Earth Sciences Division; Univ. of California, Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1256971
- Alternate Identifier(s):
- OSTI ID: 1379293
- Grant/Contract Number:
- AC02-05CH11231; EAR-08199072
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 7; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES
Citation Formats
Bouskill, Nicholas J., Wood, Tana E., Baran, Richard, Ye, Zaw, Bowen, Benjamin P., Lim, HsiaoChien, Zhou, Jizhong, Nostrand, Joy D. Van, Nico, Peter, Northen, Trent R., Silver, Whendee L., and Brodie, Eoin L. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. United States: N. p., 2016.
Web. doi:10.3389/fmicb.2016.00525.
Bouskill, Nicholas J., Wood, Tana E., Baran, Richard, Ye, Zaw, Bowen, Benjamin P., Lim, HsiaoChien, Zhou, Jizhong, Nostrand, Joy D. Van, Nico, Peter, Northen, Trent R., Silver, Whendee L., & Brodie, Eoin L. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. United States. https://doi.org/10.3389/fmicb.2016.00525
Bouskill, Nicholas J., Wood, Tana E., Baran, Richard, Ye, Zaw, Bowen, Benjamin P., Lim, HsiaoChien, Zhou, Jizhong, Nostrand, Joy D. Van, Nico, Peter, Northen, Trent R., Silver, Whendee L., and Brodie, Eoin L. Wed .
"Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism". United States. https://doi.org/10.3389/fmicb.2016.00525. https://www.osti.gov/servlets/purl/1256971.
@article{osti_1256971,
title = {Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism},
author = {Bouskill, Nicholas J. and Wood, Tana E. and Baran, Richard and Ye, Zaw and Bowen, Benjamin P. and Lim, HsiaoChien and Zhou, Jizhong and Nostrand, Joy D. Van and Nico, Peter and Northen, Trent R. and Silver, Whendee L. and Brodie, Eoin L.},
abstractNote = {© 2016 Bouskill, Wood, Baran, Ye, Bowen, Lim, Zhou, Van Nostrand, Nico, Northen, Silver and Brodie. Global climate models predict a future of increased severity of drought in many tropical forests. Soil microbes are central to the balance of these systems as sources or sinks of atmospheric carbon (C), yet how they respond metabolically to drought is not well-understood. We simulated drought in the typically aseasonal Luquillo Experimental Forest, Puerto Rico, by intercepting precipitation falling through the fo rest canopy. This approach reduced soil moisture by 13% and water potential by 0.14 MPa (from -0.2 to -0.34). Previous results from this experiment have demonstrated that the diversity and composition of these soil microbial communities are sensitive to even small changes in soil water. Here, we show prolonged drought significantly alters the functional potential of the community and provokes a clear osmotic stress response, including the production of compatible solutes that increase intracellular C demand. Subsequently, a microbial population emerges with a greater capacity for extracellular enzyme production targeting macromolecular carbon. Significantly, some of these drought-induced functional shifts in the soil microbiota are attenuated by prior exposure to a short-term drought suggesting that acclimation may occur despite a lack of longer-term drought history.},
doi = {10.3389/fmicb.2016.00525},
journal = {Frontiers in Microbiology},
number = ,
volume = 7,
place = {United States},
year = {Wed Apr 20 00:00:00 EDT 2016},
month = {Wed Apr 20 00:00:00 EDT 2016}
}
Web of Science
Works referenced in this record:
Is bacterial moisture niche a good predictor of shifts in community composition under long-term drought?
journal, January 2014
- Evans, Sarah E.; Wallenstein, Matthew D.; Burke, Ingrid C.
- Ecology, Vol. 95, Issue 1
Microorganisms and climate change: terrestrial feedbacks and mitigation options
journal, October 2010
- Singh, Brajesh K.; Bardgett, Richard D.; Smith, Pete
- Nature Reviews Microbiology, Vol. 8, Issue 11
A theoretical analysis of microbial eco-physiological and diffusion limitations to carbon cycling in drying soils
journal, June 2014
- Manzoni, S.; Schaeffer, S. M.; Katul, G.
- Soil Biology and Biochemistry, Vol. 73
Responses of extracellular enzymes to simple and complex nutrient inputs
journal, May 2005
- Allison, Steven D.; Vitousek, Peter M.
- Soil Biology and Biochemistry, Vol. 37, Issue 5
Microbial biomass response to a rapid increase in water potential when dry soil is wetted
journal, January 1987
- Kieft, Thomas L.; soroker, Edith; firestone, Mary K.
- Soil Biology and Biochemistry, Vol. 19, Issue 2
Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes
journal, January 2013
- Zimmerman, Amy E.; Martiny, Adam C.; Allison, Steven D.
- The ISME Journal, Vol. 7, Issue 6
Redox Fluctuation Structures Microbial Communities in a Wet Tropical Soil
journal, November 2005
- Pett-Ridge, J.; Firestone, M. K.
- Applied and Environmental Microbiology, Vol. 71, Issue 11
Modeling the effects of temperature and moisture on soil enzyme activity: Linking laboratory assays to continuous field data
journal, December 2012
- Steinweg, J. Megan; Dukes, Jeffrey S.; Wallenstein, Matthew D.
- Soil Biology and Biochemistry, Vol. 55
Response of osmolytes in soil to drying and rewetting
journal, March 2014
- Warren, Charles R.
- Soil Biology and Biochemistry, Vol. 70
Phylogenetic Distribution of Potential Cellulases in Bacteria
journal, December 2012
- Berlemont, Renaud; Martiny, Adam C.
- Applied and Environmental Microbiology, Vol. 79, Issue 5
Iron-oxide crystallinity increases during soil redox oscillations
journal, April 2006
- Thompson, Aaron; Chadwick, Oliver A.; Rancourt, Denis G.
- Geochimica et Cosmochimica Acta, Vol. 70, Issue 7
Climate change alters ecological strategies of soil bacteria
journal, November 2013
- Evans, Sarah E.; Wallenstein, Matthew D.
- Ecology Letters, Vol. 17, Issue 2
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume
journal, August 2011
- Lu, Zhenmei; Deng, Ye; Van Nostrand, Joy D.
- The ISME Journal, Vol. 6, Issue 2
Drought decreases soil enzyme activity in a Mediterranean Quercus ilex L. forest
journal, March 2005
- Sardans, J.; Peñuelas, J.
- Soil Biology and Biochemistry, Vol. 37, Issue 3
Nutrient availability in a montane wet tropical forest: Spatial patterns and methodological considerations
journal, July 1994
- Silver, W. L.; Scatena, F. N.; Johnson, A. H.
- Plant and Soil, Vol. 164, Issue 1
The Influence of Tropical Plant Diversity and Composition on Soil Microbial Communities
journal, August 2006
- Carney, Karen M.; Matson, Pamela A.
- Microbial Ecology, Vol. 52, Issue 2
An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure: Multi-scale drivers of diversity
journal, June 2010
- Gudelj, Ivana; Weitz, Joshua S.; Ferenci, Tom
- Ecology Letters, Vol. 13, Issue 9
Hydration-controlled bacterial motility and dispersal on surfaces
journal, July 2010
- Dechesne, A.; Wang, G.; Gulez, G.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 32
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups
journal, June 2012
- Placella, S. A.; Brodie, E. L.; Firestone, M. K.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 27
Resistance, resilience, and redundancy in microbial communities
journal, August 2008
- Allison, S. D.; Martiny, J. B. H.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue Supplement 1
Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review
journal, June 2007
- Or, D.; Smets, B. F.; Wraith, J. M.
- Advances in Water Resources, Vol. 30, Issue 6-7
Belowground biodiversity and ecosystem functioning
journal, November 2014
- Bardgett, Richard D.; van der Putten, Wim H.
- Nature, Vol. 515, Issue 7528
Increased dry-season length over southern Amazonia in recent decades and its implication for future climate projection
journal, October 2013
- Fu, R.; Yin, L.; Li, W.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 45
A Large and Persistent Carbon Sink in the World's Forests
journal, July 2011
- Pan, Y.; Birdsey, R. A.; Fang, J.
- Science, Vol. 333, Issue 6045
Submicron structures provide preferential spots for carbon and nitrogen sequestration in soils
journal, January 2014
- Vogel, Cordula; Mueller, Carsten W.; Höschen, Carmen
- Nature Communications, Vol. 5, Issue 1
Static osmolyte concentrations in microbial biomass during seasonal drought in a California grassland
journal, February 2013
- Boot, Claudia M.; Schaeffer, Sean M.; Schimel, Joshua P.
- Soil Biology and Biochemistry, Vol. 57
Microbial Stress-Response Physiology and its Implications for Ecosystem Function
journal, June 2007
- Schimel, Joshua; Balser, Teri C.; Wallenstein, Matthew
- Ecology, Vol. 88, Issue 6
Persistence of soil organic matter as an ecosystem property
journal, October 2011
- Schmidt, Michael W. I.; Torn, Margaret S.; Abiven, Samuel
- Nature, Vol. 478, Issue 7367
Impacts of climate warming on terrestrial ectotherms across latitude
journal, May 2008
- Deutsch, C. A.; Tewksbury, J. J.; Huey, R. B.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 18
Mapping the niche space of soil microorganisms using taxonomy and traits
journal, August 2012
- Lennon, Jay T.; Aanderud, Zachary T.; Lehmkuhl, B. K.
- Ecology, Vol. 93, Issue 8
Strong spatial variability in trace gasdynamics following experimental drought in a humid tropical forest: DROUGHT IMPACTS ON TROPICAL FORESTS
journal, July 2012
- Wood, Tana E.; Silver, Whendee L.
- Global Biogeochemical Cycles, Vol. 26, Issue 3
Field-Scale Transplantation Experiment To Investigate Structures of Soil Bacterial Communities at Pioneering Sites
journal, September 2011
- Lazzaro, Anna; Gauer, Andreas; Zeyer, Josef
- Applied and Environmental Microbiology, Vol. 77, Issue 23
Microbial abundance and composition influence litter decomposition response to environmental change
journal, March 2013
- Allison, Steven D.; Lu, Ying; Weihe, Claudia
- Ecology, Vol. 94, Issue 3
Quantifying environmental adaptation of metabolic pathways in metagenomics
journal, January 2009
- Gianoulis, T. A.; Raes, J.; Patel, P. V.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 5
Community history affects the predictability of microbial ecosystem development
journal, August 2013
- Pagaling, Eulyn; Strathdee, Fiona; Spears, Bryan M.
- The ISME Journal, Vol. 8, Issue 1
Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments
journal, September 1998
- Kempf, Bettina; Bremer, E.
- Archives of Microbiology, Vol. 170, Issue 5
Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile
journal, December 2008
- Okoro, Chinyere K.; Brown, Roselyn; Jones, Amanda L.
- Antonie van Leeuwenhoek, Vol. 95, Issue 2
Microbial Biogeography: From Taxonomy to Traits
journal, May 2008
- Green, J. L.; Bohannan, B. J. M.; Whitaker, R. J.
- Science, Vol. 320, Issue 5879
Adaptive prediction of environmental changes by microorganisms
journal, June 2009
- Mitchell, Amir; Romano, Gal H.; Groisman, Bella
- Nature, Vol. 460, Issue 7252
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
journal, June 2013
- Rajeev, Lara; da Rocha, Ulisses Nunes; Klitgord, Niels
- The ISME Journal, Vol. 7, Issue 11
Microbial communities acclimate to recurring changes in soil redox potential status: Fluctuating redox microbial communities
journal, December 2010
- DeAngelis, Kristen M.; Silver, Whendee L.; Thompson, Andrew W.
- Environmental Microbiology, Vol. 12, Issue 12
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
journal, October 2009
- Ivanov, Ivaylo I.; Atarashi, Koji; Manel, Nicolas
- Cell, Vol. 139, Issue 3
Drought mediates the importance of stochastic community assembly
journal, October 2007
- Chase, J. M.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 44
Microbial community response to varying magnitudes of desiccation in soil: A test of the osmolyte accumulation hypothesis
journal, February 2013
- Kakumanu, Madhavi L.; Cantrell, Charles L.; Williams, Mark A.
- Soil Biology and Biochemistry, Vol. 57
Microbial community composition in sediments resists perturbation by nutrient enrichment
journal, March 2011
- Bowen, Jennifer L.; Ward, Bess B.; Morrison, Hilary G.
- The ISME Journal, Vol. 5, Issue 9
Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought
journal, November 2012
- Bouskill, Nicholas J.; Lim, Hsiao Chien; Borglin, Sharon
- The ISME Journal, Vol. 7, Issue 2
Rapid evolutionary innovation during an Archaean genetic expansion
journal, December 2010
- David, Lawrence A.; Alm, Eric J.
- Nature, Vol. 469, Issue 7328
Activities of extracellular enzymes in physically isolated fractions of restored grassland soils
journal, November 2006
- Allison, Steven D.; Jastrow, Julie D.
- Soil Biology and Biochemistry, Vol. 38, Issue 11
Characterization of free and adsorbed phosphatases in soils
journal, April 1990
- Kandeler, E.
- Biology and Fertility of Soils, Vol. 9, Issue 2
The Vertical Distribution of soil Organic Carbon and its Relation to Climate and Vegetation
journal, April 2000
- Jobbágy, Esteban G.; Jackson, Robert B.
- Ecological Applications, Vol. 10, Issue 2
Increasing drought under global warming in observations and models
journal, August 2012
- Dai, Aiguo
- Nature Climate Change, Vol. 3, Issue 1
A trait-based approach for modelling microbial litter decomposition
journal, May 2012
- Allison, S. D.
- Ecology Letters, Vol. 15, Issue 9
Microbial contributions to climate change through carbon cycle feedbacks
journal, July 2008
- Bardgett, Richard D.; Freeman, Chris; Ostle, Nicholas J.
- The ISME Journal, Vol. 2, Issue 8
Mineral control of soil organic carbon storage and turnover
journal, September 1997
- Torn, Margaret S.; Trumbore, Susan E.; Chadwick, Oliver A.
- Nature, Vol. 389, Issue 6647
Invariant soil water potential at zero microbial respiration explained by hydrological discontinuity in dry soils
journal, October 2014
- Manzoni, S.; Katul, G.
- Geophysical Research Letters, Vol. 41, Issue 20
Modelling the survival of bacteria in drylands: the advantage of being dormant
journal, May 2002
- Bär, M.; Hardenberg, J.; Meron, E.
- Proceedings of the Royal Society of London. Series B: Biological Sciences, Vol. 269, Issue 1494
Memory and Fitness Optimization of Bacteria under Fluctuating Environments
journal, September 2014
- Lambert, Guillaume; Kussell, Edo
- PLOS Genetics
Ecological significance of compatible solute accumulation by micro-organisms: from single cells to global climate
journal, July 2000
- Welsh, David T.
- FEMS Microbiology Reviews, Vol. 24, Issue 3
Enzyme-Clay Interactions and Their Impact on Transformations of Natural and Anthropogenic Organic Compounds in Soil
journal, January 2000
- Naidja, A.; Huang, P. M.; Bollag, J. -M.
- Journal of Environment Quality, Vol. 29, Issue 3
Short-Term Precipitation Exclusion Alters Microbial Responses to Soil Moisture in a Wet Tropical Forest
journal, June 2014
- Waring, Bonnie G.; Hawkes, Christine V.
- Microbial Ecology, Vol. 69, Issue 4
Tolerance adaptation and precipitation changes complicate latitudinal patterns of climate change impacts
journal, June 2010
- Bonebrake, Timothy C.; Mastrandrea, Michael D.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 28
Microbial enzymatic responses to drought and to nitrogen addition in a southern California grassland
journal, September 2013
- Alster, Charlotte J.; German, Donovan P.; Lu, Ying
- Soil Biology and Biochemistry, Vol. 64
Thermal adaptation of decomposer communities in warming soils
journal, January 2013
- Bradford, Mark A.
- Frontiers in Microbiology, Vol. 4
Effects of carbon additions on iron reduction and phosphorus availability in a humid tropical forest soil
journal, August 2009
- Liptzin, Daniel; Silver, Whendee L.
- Soil Biology and Biochemistry, Vol. 41, Issue 8
Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments: Constraints on enzymatic decomposition
journal, April 2005
- Allison, Steven D.
- Ecology Letters, Vol. 8, Issue 6
Soil minerals and humic acids alter enzyme stability: implications for ecosystem processes
journal, October 2006
- Allison, Steven D.
- Biogeochemistry, Vol. 81, Issue 3
Tortuosity, Diffusivity, and Permeability in the Soil Liquid and Gaseous Phases
journal, January 2001
- Moldrup, P.; Olesen, T.; Komatsu, T.
- Soil Science Society of America Journal, Vol. 65, Issue 3
Responses of soil microbial communities to water stress: results from a meta-analysis
journal, April 2012
- Manzoni, Stefano; Schimel, Joshua P.; Porporato, Amilcare
- Ecology, Vol. 93, Issue 4
Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland
journal, May 2009
- Bell, Colin W.; Acosta-Martinez, Veronica; McIntyre, Nancy E.
- Microbial Ecology, Vol. 58, Issue 4
Soil microbial community response to drying and rewetting stress: does historical precipitation regime matter?
journal, September 2011
- Evans, Sarah E.; Wallenstein, Matthew D.
- Biogeochemistry, Vol. 109, Issue 1-3
Tropical forest soil microbial communities couple iron and carbon biogeochemistry
journal, September 2010
- Dubinsky, Eric A.; Silver, Whendee L.; Firestone, Mary K.
- Ecology, Vol. 91, Issue 9
Drought-induced carbon loss in peatlands
journal, November 2011
- Fenner, Nathalie; Freeman, Chris
- Nature Geoscience, Vol. 4, Issue 12
Physiological and genetic responses of bacteria to osmotic stress.
journal, January 1989
- Csonka, L. N.
- Microbiological Reviews, Vol. 53, Issue 1
Desiccation tolerance of prokaryotes.
journal, January 1994
- Potts, M.
- Microbiological Reviews, Vol. 58, Issue 4
Ecological significance of compatible solute accumulation by micro-organisms: from single cells to global climate
journal, July 2000
- Welsh, D.
- FEMS Microbiology Reviews, Vol. 24, Issue 3
Adaptive Prediction of Environmental Changes by Microorganisms
journal, January 2009
- Mitchell, A.; Romano, G. H.; Groisman, B.
- Topologica, Vol. 2, Issue 1
Persistence of soil organic matter as an ecosystem property
text, January 2011
- Schmidt, M. W. I.; Torn, M. S.; Abiven, S.
- Nature Publishing Group
The Influence of Tropical Plant Diversity and Composition on Soil Microbial Communities
journal, August 2006
- Carney, Karen M.; Matson, Pamela A.
- Microbial Ecology, Vol. 52, Issue 2
Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland
journal, May 2009
- Bell, Colin W.; Acosta-Martinez, Veronica; McIntyre, Nancy E.
- Microbial Ecology, Vol. 58, Issue 4
Short-Term Precipitation Exclusion Alters Microbial Responses to Soil Moisture in a Wet Tropical Forest
journal, June 2014
- Waring, Bonnie G.; Hawkes, Christine V.
- Microbial Ecology, Vol. 69, Issue 4
Experimental freezing of freshwater pennate diatoms from polar habitats
journal, April 2021
- Hejduková, Eva; Nedbalová, Linda
- Protoplasma, Vol. 258, Issue 6
Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile
journal, December 2008
- Okoro, Chinyere K.; Brown, Roselyn; Jones, Amanda L.
- Antonie van Leeuwenhoek, Vol. 95, Issue 2
Soil minerals and humic acids alter enzyme stability: implications for ecosystem processes
journal, October 2006
- Allison, Steven D.
- Biogeochemistry, Vol. 81, Issue 3
Soil microbial community response to drying and rewetting stress: does historical precipitation regime matter?
journal, September 2011
- Evans, Sarah E.; Wallenstein, Matthew D.
- Biogeochemistry, Vol. 109, Issue 1-3
Microbial biomass response to a rapid increase in water potential when dry soil is wetted
journal, January 1987
- Kieft, Thomas L.; soroker, Edith; firestone, Mary K.
- Soil Biology and Biochemistry, Vol. 19, Issue 2
Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review
journal, June 2007
- Or, D.; Smets, B. F.; Wraith, J. M.
- Advances in Water Resources, Vol. 30, Issue 6-7
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
journal, October 2009
- Ivanov, Ivaylo I.; Atarashi, Koji; Manel, Nicolas
- Cell, Vol. 139, Issue 3
Iron-oxide crystallinity increases during soil redox oscillations
journal, April 2006
- Thompson, Aaron; Chadwick, Oliver A.; Rancourt, Denis G.
- Geochimica et Cosmochimica Acta, Vol. 70, Issue 7
Drought decreases soil enzyme activity in a Mediterranean Quercus ilex L. forest
journal, March 2005
- Sardans, J.; Peñuelas, J.
- Soil Biology and Biochemistry, Vol. 37, Issue 3
Responses of extracellular enzymes to simple and complex nutrient inputs
journal, May 2005
- Allison, Steven D.; Vitousek, Peter M.
- Soil Biology and Biochemistry, Vol. 37, Issue 5
Activities of extracellular enzymes in physically isolated fractions of restored grassland soils
journal, November 2006
- Allison, Steven D.; Jastrow, Julie D.
- Soil Biology and Biochemistry, Vol. 38, Issue 11
Effects of carbon additions on iron reduction and phosphorus availability in a humid tropical forest soil
journal, August 2009
- Liptzin, Daniel; Silver, Whendee L.
- Soil Biology and Biochemistry, Vol. 41, Issue 8
Modeling the effects of temperature and moisture on soil enzyme activity: Linking laboratory assays to continuous field data
journal, December 2012
- Steinweg, J. Megan; Dukes, Jeffrey S.; Wallenstein, Matthew D.
- Soil Biology and Biochemistry, Vol. 55
Microbial community response to varying magnitudes of desiccation in soil: A test of the osmolyte accumulation hypothesis
journal, February 2013
- Kakumanu, Madhavi L.; Cantrell, Charles L.; Williams, Mark A.
- Soil Biology and Biochemistry, Vol. 57
Static osmolyte concentrations in microbial biomass during seasonal drought in a California grassland
journal, February 2013
- Boot, Claudia M.; Schaeffer, Sean M.; Schimel, Joshua P.
- Soil Biology and Biochemistry, Vol. 57
Response of osmolytes in soil to drying and rewetting
journal, March 2014
- Warren, Charles R.
- Soil Biology and Biochemistry, Vol. 70
A theoretical analysis of microbial eco-physiological and diffusion limitations to carbon cycling in drying soils
journal, June 2014
- Manzoni, S.; Schaeffer, S. M.; Katul, G.
- Soil Biology and Biochemistry, Vol. 73
Extracellular enzyme-clay mineral complexes: Enzyme adsorption, alteration of enzyme activity, and protection from photodegradation
journal, October 2003
- Tietjen, Todd; G. Wetzel, Robert
- Aquatic Ecology, Vol. 37, Issue 4
Mineral control of soil organic carbon storage and turnover
journal, September 1997
- Torn, Margaret S.; Trumbore, Susan E.; Chadwick, Oliver A.
- Nature, Vol. 389, Issue 6647
Microbial contributions to climate change through carbon cycle feedbacks
journal, July 2008
- Bardgett, Richard D.; Freeman, Chris; Ostle, Nicholas J.
- The ISME Journal, Vol. 2, Issue 8
Microbial community composition in sediments resists perturbation by nutrient enrichment
journal, March 2011
- Bowen, Jennifer L.; Ward, Bess B.; Morrison, Hilary G.
- The ISME Journal, Vol. 5, Issue 9
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume
journal, August 2011
- Lu, Zhenmei; Deng, Ye; Van Nostrand, Joy D.
- The ISME Journal, Vol. 6, Issue 2
Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought
journal, November 2012
- Bouskill, Nicholas J.; Lim, Hsiao Chien; Borglin, Sharon
- The ISME Journal, Vol. 7, Issue 2
Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes
journal, January 2013
- Zimmerman, Amy E.; Martiny, Adam C.; Allison, Steven D.
- The ISME Journal, Vol. 7, Issue 6
Community history affects the predictability of microbial ecosystem development
journal, August 2013
- Pagaling, Eulyn; Strathdee, Fiona; Spears, Bryan M.
- The ISME Journal, Vol. 8, Issue 1
Adaptive prediction of environmental changes by microorganisms
journal, June 2009
- Mitchell, Amir; Romano, Gal H.; Groisman, Bella
- Nature, Vol. 460, Issue 7252
Rapid evolutionary innovation during an Archaean genetic expansion
journal, December 2010
- David, Lawrence A.; Alm, Eric J.
- Nature, Vol. 469, Issue 7328
Persistence of soil organic matter as an ecosystem property
journal, October 2011
- Schmidt, Michael W. I.; Torn, Margaret S.; Abiven, Samuel
- Nature, Vol. 478, Issue 7367
Belowground biodiversity and ecosystem functioning
journal, November 2014
- Bardgett, Richard D.; van der Putten, Wim H.
- Nature, Vol. 515, Issue 7528
Increasing drought under global warming in observations and models
journal, August 2012
- Dai, Aiguo
- Nature Climate Change, Vol. 3, Issue 1
Submicron structures provide preferential spots for carbon and nitrogen sequestration in soils
journal, January 2014
- Vogel, Cordula; Mueller, Carsten W.; Höschen, Carmen
- Nature Communications, Vol. 5, Issue 1
Drought-induced carbon loss in peatlands
journal, November 2011
- Fenner, Nathalie; Freeman, Chris
- Nature Geoscience, Vol. 4, Issue 12
Microorganisms and climate change: terrestrial feedbacks and mitigation options
journal, October 2010
- Singh, Brajesh K.; Bardgett, Richard D.; Smith, Pete
- Nature Reviews Microbiology, Vol. 8, Issue 11
Successional trajectory of bacterial communities in soil are shaped by plant-driven changes during secondary succession
journal, June 2020
- Krishna, Mayank; Gupta, Shruti; Delgado – Baquerizo, Manuel
- Scientific Reports, Vol. 10, Issue 1
Impacts of climate warming on terrestrial ectotherms across latitude
journal, May 2008
- Deutsch, C. A.; Tewksbury, J. J.; Huey, R. B.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 18
Quantifying environmental adaptation of metabolic pathways in metagenomics
journal, January 2009
- Gianoulis, T. A.; Raes, J.; Patel, P. V.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 5
Tolerance adaptation and precipitation changes complicate latitudinal patterns of climate change impacts
journal, June 2010
- Bonebrake, Timothy C.; Mastrandrea, Michael D.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 28
Hydration-controlled bacterial motility and dispersal on surfaces
journal, July 2010
- Dechesne, A.; Wang, G.; Gulez, G.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 32
Ecosystem-specific selection pressures revealed through comparative population genomics
journal, October 2010
- Coleman, M. L.; Chisholm, S. W.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 43
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups
journal, June 2012
- Placella, S. A.; Brodie, E. L.; Firestone, M. K.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 27
Increased dry-season length over southern Amazonia in recent decades and its implication for future climate projection
journal, October 2013
- Fu, R.; Yin, L.; Li, W.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 45
Modelling the survival of bacteria in drylands: the advantage of being dormant
journal, May 2002
- Bär, M.; Hardenberg, J.; Meron, E.
- Proceedings of the Royal Society of London. Series B: Biological Sciences, Vol. 269, Issue 1494
Climate change alters ecological strategies of soil bacteria
journal, November 2013
- Evans, Sarah E.; Wallenstein, Matthew D.
- Ecology Letters, Vol. 17, Issue 2
A trait-based approach for modelling microbial litter decomposition
journal, May 2012
- Allison, S. D.
- Ecology Letters, Vol. 15, Issue 9
Microbial communities acclimate to recurring changes in soil redox potential status: Fluctuating redox microbial communities
journal, December 2010
- DeAngelis, Kristen M.; Silver, Whendee L.; Thompson, Andrew W.
- Environmental Microbiology, Vol. 12, Issue 12
Microbial Biogeography: From Taxonomy to Traits
journal, May 2008
- Green, J. L.; Bohannan, B. J. M.; Whitaker, R. J.
- Science, Vol. 320, Issue 5879
A Large and Persistent Carbon Sink in the World's Forests
journal, July 2011
- Pan, Y.; Birdsey, R. A.; Fang, J.
- Science, Vol. 333, Issue 6045
Changes in Cytoplasmic Carbon and Nitrogen Pools in a Soil Bacterium and a Fungus in Response to Salt Stress
journal, January 1989
- Schimel, Joshua P.; Scott, Warren J.; Killham, Kenneth
- Applied and Environmental Microbiology, Vol. 55, Issue 6
Mechanisms for soil moisture effects on activity of nitrifying bacteria.
journal, January 1995
- Stark, J. M.; Firestone, M. K.
- Applied and environmental microbiology, Vol. 61, Issue 1
Physiological and genetic responses of bacteria to osmotic stress
journal, March 1989
- Csonka, L. N.
- Microbiological Reviews, Vol. 53, Issue 1
Desiccation tolerance of prokaryotes.
journal, January 1994
- Potts, M.
- Microbiological Reviews, Vol. 58, Issue 4
Microbial Stress-Response Physiology and its Implications for Ecosystem Function
journal, June 2007
- Schimel, Joshua; Balser, Teri C.; Wallenstein, Matthew
- Ecology, Vol. 88, Issue 6
Responses of soil microbial communities to water stress: results from a meta-analysis
journal, April 2012
- Manzoni, Stefano; Schimel, Joshua P.; Porporato, Amilcare
- Ecology, Vol. 93, Issue 4
Mapping the niche space of soil microorganisms using taxonomy and traits
journal, August 2012
- Lennon, Jay T.; Aanderud, Zachary T.; Lehmkuhl, B. K.
- Ecology, Vol. 93, Issue 8
Microbial abundance and composition influence litter decomposition response to environmental change
journal, March 2013
- Allison, Steven D.; Lu, Ying; Weihe, Claudia
- Ecology, Vol. 94, Issue 3
Is bacterial moisture niche a good predictor of shifts in community composition under long-term drought?
journal, January 2014
- Evans, Sarah E.; Wallenstein, Matthew D.; Burke, Ingrid C.
- Ecology, Vol. 95, Issue 1
Enzyme-Clay Interactions and Their Impact on Transformations of Natural and Anthropogenic Organic Compounds in Soil
journal, January 2000
- Naidja, A.; Huang, P. M.; Bollag, J. -M.
- Journal of Environment Quality, Vol. 29, Issue 3
Tortuosity, Diffusivity, and Permeability in the Soil Liquid and Gaseous Phases
journal, January 2001
- Moldrup, P.; Olesen, T.; Komatsu, T.
- Soil Science Society of America Journal, Vol. 65, Issue 3
Thermal adaptation of decomposer communities in warming soils
journal, January 2013
- Bradford, Mark A.
- Frontiers in Microbiology, Vol. 4
Works referencing / citing this record:
Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria
journal, April 2018
- Xu, Ling; Naylor, Dan; Dong, Zhaobin
- Proceedings of the National Academy of Sciences, Vol. 115, Issue 18
Selection, succession and stabilization of soil microbial consortia
posted_content, January 2019
- Zegeye, Elias K.; Brislawn, Colin J.; Farris, Yuliya
Drought Stress and Root-Associated Bacterial Communities
journal, January 2018
- Naylor, Dan; Coleman-Derr, Devin
- Frontiers in Plant Science, Vol. 8
Effects of Hurricane-Felled Tree Trunks on Soil Carbon, Nitrogen, Microbial Biomass, and Root Length in a Wet Tropical Forest
journal, November 2016
- Lodge, D.; Winter, Dirk; González, Grizelle
- Forests, Vol. 7, Issue 12
Soil Biology Research across Latitude, Elevation and Disturbance Gradients: A Review of Forest Studies from Puerto Rico during the Past 25 Years
journal, May 2017
- González, Grizelle; Lodge, D.
- Forests, Vol. 8, Issue 6
Responses of Soil Labile Organic Carbon to a Simulated Hurricane Disturbance in a Tropical Wet Forest
journal, July 2018
- Liu, Xianbin; Zeng, Xiucheng; Zou, Xiaoming
- Forests, Vol. 9, Issue 7
Role of the Extremolytes Ectoine and Hydroxyectoine as Stress Protectants and Nutrients: Genetics, Phylogenomics, Biochemistry, and Structural Analysis
journal, March 2018
- Czech, Laura; Hermann, Lucas; Stöveken, Nadine
- Genes, Vol. 9, Issue 4
The Fate of Chemical Pollutants with Soil Properties and Processes in the Climate Change Paradigm—A Review
journal, September 2018
- Biswas, Bhabananda; Qi, Fangjie; Biswas, Jayanta
- Soil Systems, Vol. 2, Issue 3
Plant Host-Associated Mechanisms for Microbial Selection
journal, July 2019
- Jones, Piet; Garcia, Benjamin J.; Furches, Anna
- Frontiers in Plant Science, Vol. 10
Effects of Hurricane-Felled Tree Trunks on Soil Carbon, Nitrogen, Microbial Biomass, and Root Length in a Wet Tropical Forest
text, January 2016
- Lodge, D. Jean; Winter, Dirk Christopher; González, Grizelle
- Columbia University
Drought and host selection influence bacterial community dynamics in the grass root microbiome
journal, July 2017
- Naylor, Dan; DeGraaf, Stephanie; Purdom, Elizabeth
- The ISME Journal, Vol. 11, Issue 12
Persistence of soil organic carbon caused by functional complexity
journal, July 2020
- Lehmann, Johannes; Hansel, Colleen M.; Kaiser, Christina
- Nature Geoscience, Vol. 13, Issue 8
Alteration in expression level of some growth and stress-related genes after rhizobacteria inoculation to alleviate drought tolerance in sensitive rice genotype
journal, August 2021
- Omar, Samar A.; Fetyan, Nashwa A. H.; Eldenary, Medhat E.
- Chemical and Biological Technologies in Agriculture, Vol. 8, Issue 1
Temporal and Spatial Variation of Soil Bacteria Richness, Composition, and Function in a Neotropical Rainforest
journal, July 2016
- Kivlin, Stephanie N.; Hawkes, Christine V.
- PLOS ONE, Vol. 11, Issue 7
Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition
journal, November 2018
- Treseder, Kathleen K.; Berlemont, Renaud; Allison, Steven D.
- PLOS ONE, Vol. 13, Issue 11
Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites
journal, December 2017
- Jenkins, Stefan; Swenson, Tami L.; Lau, Rebecca
- Frontiers in Microbiology, Vol. 8
The GbsR Family of Transcriptional Regulators: Functional Characterization of the OpuAR Repressor
journal, October 2018
- Ronzheimer, Stefanie; Warmbold, Bianca; Arnhold, Christian
- Frontiers in Microbiology, Vol. 9
Shifts Between and Among Populations of Wheat Rhizosphere Pseudomonas, Streptomyces and Phyllobacterium Suggest Consistent Phosphate Mobilization at Different Wheat Growth Stages Under Abiotic Stress
journal, January 2020
- Breitkreuz, Claudia; Buscot, François; Tarkka, Mika
- Frontiers in Microbiology, Vol. 10
Drought Stress and Root-Associated Bacterial Communities
journal, January 2018
- Naylor, Dan; Coleman-Derr, Devin
- Frontiers in Plant Science, Vol. 8
Plant Host-Associated Mechanisms for Microbial Selection
journal, July 2019
- Jones, Piet; Garcia, Benjamin J.; Furches, Anna
- Frontiers in Plant Science, Vol. 10
Role of the Extremolytes Ectoine and Hydroxyectoine as Stress Protectants and Nutrients: Genetics, Phylogenomics, Biochemistry, and Structural Analysis
journal, March 2018
- Czech, Laura; Hermann, Lucas; Stöveken, Nadine
- Genes, Vol. 9, Issue 4