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Title: High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia

Abstract

© 2015 Eshraghi et al. Bradyrhizobium sp. strain WSM1743 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of an Indigofera sp. WSM1743 was isolated from a nodule recovered from the roots of an Indigofera sp. growing 20 km north of Carnarvon in Australia. It is slow growing, tolerates up to 1 % NaCl and is capable of growth at 37 °C. Here we describe the features of Bradyrhizobium sp. strain WSM1743, together with genome sequence information and its annotation. The 8,341,956 bp high-quality permanent draft genome is arranged into 163 scaffolds and 167 contigs, contains 7908 protein-coding genes and 75 RNA-only encoding genes and was sequenced as part of the Root Nodule Bacteria chapter of the Genomic Encyclopedia of Bacteria and Archaea project.

Authors:
 [1];  [1];  [1];  [2];  [2];  [2];  [3];  [2];  [4];  [1];  [5];  [1];  [1]
+ Show Author Affiliations
  1. Murdoch Univ. (Western Australia)
  2. DOE Joint Genome Inst., Walnut Creek, CA (United States)
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  4. DOE Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz, Jeddah (Saudia Arabia)
  5. Dept. of Agriculture and Food, South Perth (Western Australia)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1256937
Alternate Identifier(s):
OSTI ID: 1378608
Grant/Contract Number:  
AC02-05CH11231; AC52-07NA27344
Resource Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Root-nodule bacteria; Nitrogen fixation; Rhizobia; Alphaproteobacteria; GEBA-RNB

Citation Formats

Eshraghi, Leila, De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Ivanova, Natalia, Pati, Amrita, Markowitz, Victor, Woyke, Tanja, Kyrpides, Nikos C., Tiwari, Ravi, Yates, Ron, Howieson, John, and Reeve, Wayne. High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia. United States: N. p., 2015. Web. doi:10.1186/s40793-015-0073-2.
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Eshraghi, Leila, De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Ivanova, Natalia, Pati, Amrita, Markowitz, Victor, Woyke, Tanja, Kyrpides, Nikos C., Tiwari, Ravi, Yates, Ron, Howieson, John, & Reeve, Wayne. High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia. United States. https://doi.org/10.1186/s40793-015-0073-2
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Eshraghi, Leila, De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Ivanova, Natalia, Pati, Amrita, Markowitz, Victor, Woyke, Tanja, Kyrpides, Nikos C., Tiwari, Ravi, Yates, Ron, Howieson, John, and Reeve, Wayne. Mon . "High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia". United States. https://doi.org/10.1186/s40793-015-0073-2. https://www.osti.gov/servlets/purl/1256937.
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@article{osti_1256937,
title = {High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia},
author = {Eshraghi, Leila and De Meyer, Sofie E. and Tian, Rui and Seshadri, Rekha and Ivanova, Natalia and Pati, Amrita and Markowitz, Victor and Woyke, Tanja and Kyrpides, Nikos C. and Tiwari, Ravi and Yates, Ron and Howieson, John and Reeve, Wayne},
abstractNote = {© 2015 Eshraghi et al. Bradyrhizobium sp. strain WSM1743 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of an Indigofera sp. WSM1743 was isolated from a nodule recovered from the roots of an Indigofera sp. growing 20 km north of Carnarvon in Australia. It is slow growing, tolerates up to 1 % NaCl and is capable of growth at 37 °C. Here we describe the features of Bradyrhizobium sp. strain WSM1743, together with genome sequence information and its annotation. The 8,341,956 bp high-quality permanent draft genome is arranged into 163 scaffolds and 167 contigs, contains 7908 protein-coding genes and 75 RNA-only encoding genes and was sequenced as part of the Root Nodule Bacteria chapter of the Genomic Encyclopedia of Bacteria and Archaea project.},
doi = {10.1186/s40793-015-0073-2},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {2015},
month = {10}
}
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Publisher's Version of Record
https://doi.org/10.1186/s40793-015-0073-2
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Figures / Tables:

Fig. 1 Fig. 1: Images of Bradyrhizobium sp. strain WSM1743 using scanning (Left) and transmission (Center) electron misolid croscopy as well as light microscopy to visualize the colony morphology on a media (Right)
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IMG 4 version of the integrated microbial genomes comparative analysis system
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journal, February 2008

Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
journal, December 2012

Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T
journal, October 2011

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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
journal, July 2009

  • Mavromatis, Konstantinos; Ivanova, Natalia N.; Chen, I-Min A.
  • Standards in Genomic Sciences, Vol. 1, Issue 1
  • DOI: 10.4056/sigs.632
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    Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123
    journal, September 2018

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