Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group
Abstract
Loktanella hongkongensis UST950701-009PT is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a monospecies biofilm on polystyrene surfaces, this bacterium is able to induce larval settlement and metamorphosis of a ubiquitous polychaete tubeworm Hydroides elegans. The inductive cues are low-molecular weight compounds bound to the exopolymeric matrix of the bacterial cells. In the present study we describe the features of L. hongkongensis strain DSM 17492T together with its genome sequence and annotation and novel aspects of its phenotype. The 3,198,444 bp long genome sequence encodes 3104 protein-coding genes and 57 RNA genes. Lastly, the two unambiguously identified extrachromosomal replicons contain replication modules of the RepB and the Rhodobacteraceae-specific DnaA-like type, respectively.
- Authors:
-
- Hong Kong Univ. of Science and Technology (People's Republic of China)
- Leibniz Inst. DSMZ, Braunschweig (Germany)
- Helmholtz Centre for Infection Research, Braunschweig (Germany)
- DOE Joint Genome Institute, Walnut Creek, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1256933
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Biofilms; Marine; Roseobacter group; Rhodobacteraceae; Alphaproteobacteria; Plasmids
Citation Formats
Lau, Stanley CK, Riedel, Thomas, Fiebig, Anne, Han, James, Huntemann, Marcel, Petersen, Jörn, Ivanova, Natalia N., Markowitz, Victor, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., Klenk, Hans-Peter, and Qian, Pei-Yuan. Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group. United States: N. p., 2015.
Web. doi:10.1186/s40793-015-0050-9.
Lau, Stanley CK, Riedel, Thomas, Fiebig, Anne, Han, James, Huntemann, Marcel, Petersen, Jörn, Ivanova, Natalia N., Markowitz, Victor, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., Klenk, Hans-Peter, & Qian, Pei-Yuan. Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group. United States. https://doi.org/10.1186/s40793-015-0050-9
Lau, Stanley CK, Riedel, Thomas, Fiebig, Anne, Han, James, Huntemann, Marcel, Petersen, Jörn, Ivanova, Natalia N., Markowitz, Victor, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., Klenk, Hans-Peter, and Qian, Pei-Yuan. Tue .
"Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group". United States. https://doi.org/10.1186/s40793-015-0050-9. https://www.osti.gov/servlets/purl/1256933.
@article{osti_1256933,
title = {Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group},
author = {Lau, Stanley CK and Riedel, Thomas and Fiebig, Anne and Han, James and Huntemann, Marcel and Petersen, Jörn and Ivanova, Natalia N. and Markowitz, Victor and Woyke, Tanja and Göker, Markus and Kyrpides, Nikos C. and Klenk, Hans-Peter and Qian, Pei-Yuan},
abstractNote = {Loktanella hongkongensis UST950701-009PT is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a monospecies biofilm on polystyrene surfaces, this bacterium is able to induce larval settlement and metamorphosis of a ubiquitous polychaete tubeworm Hydroides elegans. The inductive cues are low-molecular weight compounds bound to the exopolymeric matrix of the bacterial cells. In the present study we describe the features of L. hongkongensis strain DSM 17492T together with its genome sequence and annotation and novel aspects of its phenotype. The 3,198,444 bp long genome sequence encodes 3104 protein-coding genes and 57 RNA genes. Lastly, the two unambiguously identified extrachromosomal replicons contain replication modules of the RepB and the Rhodobacteraceae-specific DnaA-like type, respectively.},
doi = {10.1186/s40793-015-0050-9},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {Tue Aug 11 00:00:00 EDT 2015},
month = {Tue Aug 11 00:00:00 EDT 2015}
}
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