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Title: σ 54-dependent regulome in Desulfovibrio vulgaris Hildenborough

Abstract

The σ 54 subunit controls a unique class of promoters in bacteria. Such promoters, without exception, require enhancer binding proteins (EBPs) for transcription initiation. Desulfovibrio vulgaris Hildenborough, a model bacterium for sulfate reduction studies, has a high number of EBPs, more than most sequenced bacteria. Finally, the cellular processes regulated by many of these EBPs remain unknown.

Authors:
 [1];  [1];  [1];  [1];  [2];  [1];  [1]
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Department of Energy Joint Genome Institute, Walnut Creek, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1256485
Alternate Identifier(s):
OSTI ID: 1378639
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
BMC Genomics
Additional Journal Information:
Journal Volume: 16; Journal Issue: 1; Journal ID: ISSN 1471-2164
Publisher:
Springer
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; transcription factor; transcriptional regulation; sigma factor; Desulfovibrio vulgaris; enhancer binding

Citation Formats

Kazakov, Alexey E., Rajeev, Lara, Chen, Amy, Luning, Eric G., Dubchak, Inna, Mukhopadhyay, Aindrila, and Novichkov, Pavel S. σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough. United States: N. p., 2015. Web. doi:10.1186/s12864-015-2176-y.
Kazakov, Alexey E., Rajeev, Lara, Chen, Amy, Luning, Eric G., Dubchak, Inna, Mukhopadhyay, Aindrila, & Novichkov, Pavel S. σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough. United States. doi:10.1186/s12864-015-2176-y.
Kazakov, Alexey E., Rajeev, Lara, Chen, Amy, Luning, Eric G., Dubchak, Inna, Mukhopadhyay, Aindrila, and Novichkov, Pavel S. Tue . "σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough". United States. doi:10.1186/s12864-015-2176-y. https://www.osti.gov/servlets/purl/1256485.
@article{osti_1256485,
title = {σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough},
author = {Kazakov, Alexey E. and Rajeev, Lara and Chen, Amy and Luning, Eric G. and Dubchak, Inna and Mukhopadhyay, Aindrila and Novichkov, Pavel S.},
abstractNote = {The σ54 subunit controls a unique class of promoters in bacteria. Such promoters, without exception, require enhancer binding proteins (EBPs) for transcription initiation. Desulfovibrio vulgaris Hildenborough, a model bacterium for sulfate reduction studies, has a high number of EBPs, more than most sequenced bacteria. Finally, the cellular processes regulated by many of these EBPs remain unknown.},
doi = {10.1186/s12864-015-2176-y},
journal = {BMC Genomics},
number = 1,
volume = 16,
place = {United States},
year = {2015},
month = {11}
}

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Works referenced in this record:

MicrobesOnline: an integrated portal for comparative and functional genomics
journal, November 2009

  • Dehal, P. S.; Joachimiak, M. P.; Price, M. N.
  • Nucleic Acids Research, Vol. 38, Issue suppl_1, p. D396-D400
  • DOI: 10.1093/nar/gkp919