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Title: Oxygen-evolving complex of Photosystem II: an analysis of second-shell residues and hydrogen-bonding networks

Authors:
; ; ;
Publication Date:
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1251462
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
Current Opinion in Chemical Biology
Additional Journal Information:
Journal Name: Current Opinion in Chemical Biology Journal Volume: 25 Journal Issue: C; Journal ID: ISSN 1367-5931
Publisher:
Elsevier
Country of Publication:
Netherlands
Language:
English

Citation Formats

Vogt, Leslie, Vinyard, David J., Khan, Sahr, and Brudvig, Gary W. Oxygen-evolving complex of Photosystem II: an analysis of second-shell residues and hydrogen-bonding networks. Netherlands: N. p., 2015. Web. doi:10.1016/j.cbpa.2014.12.040.
Vogt, Leslie, Vinyard, David J., Khan, Sahr, & Brudvig, Gary W. Oxygen-evolving complex of Photosystem II: an analysis of second-shell residues and hydrogen-bonding networks. Netherlands. https://doi.org/10.1016/j.cbpa.2014.12.040
Vogt, Leslie, Vinyard, David J., Khan, Sahr, and Brudvig, Gary W. Wed . "Oxygen-evolving complex of Photosystem II: an analysis of second-shell residues and hydrogen-bonding networks". Netherlands. https://doi.org/10.1016/j.cbpa.2014.12.040.
@article{osti_1251462,
title = {Oxygen-evolving complex of Photosystem II: an analysis of second-shell residues and hydrogen-bonding networks},
author = {Vogt, Leslie and Vinyard, David J. and Khan, Sahr and Brudvig, Gary W.},
abstractNote = {},
doi = {10.1016/j.cbpa.2014.12.040},
journal = {Current Opinion in Chemical Biology},
number = C,
volume = 25,
place = {Netherlands},
year = {Wed Apr 01 00:00:00 EDT 2015},
month = {Wed Apr 01 00:00:00 EDT 2015}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1016/j.cbpa.2014.12.040

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Cited by: 81 works
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Works referenced in this record:

Discovering oxygen channel topology in photosystem II using implicit ligand sampling and wavefront propagation
journal, May 2014

  • Zaraiskaya, Tatiana; Vassiliev, Sergey; Bruce, Doug
  • Journal of Computational Science, Vol. 5, Issue 3
  • DOI: 10.1016/j.jocs.2013.10.001

S 0 -State Model of the Oxygen-Evolving Complex of Photosystem II
journal, October 2013

  • Pal, Rhitankar; Negre, Christian F. A.; Vogt, Leslie
  • Biochemistry, Vol. 52, Issue 44
  • DOI: 10.1021/bi401214v

Un Nouveau Modele des Centres Photochimiques du Systeme ii
journal, November 1969


Mechanism of light induced water splitting in Photosystem II of oxygen evolving photosynthetic organisms
journal, August 2012


Probing the Accessibility of the Mn4Ca Cluster in Photosystem II: Channels Calculation, Noble Gas Derivatization, and Cocrystallization with DMSO
journal, September 2009


Exploring the energetics of water permeation in photosystem II by multiple steered molecular dynamics simulations
journal, September 2012

  • Vassiliev, Sergey; Zaraiskaya, Tatiana; Bruce, Doug
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1817, Issue 9
  • DOI: 10.1016/j.bbabio.2012.05.016

Radiolytic Mapping of Solvent-Contact Surfaces in Photosystem II of Higher Plants: EXPERIMENTAL IDENTIFICATION OF PUTATIVE WATER CHANNELS WITHIN THE PHOTOSYSTEM
journal, June 2013

  • Frankel, Laurie K.; Sallans, Larry; Bellamy, Henry
  • Journal of Biological Chemistry, Vol. 288, Issue 32
  • DOI: 10.1074/jbc.M113.487033

Tracking the Flow of Water through Photosystem II Using Molecular Dynamics and Streamline Tracing
journal, March 2010

  • Vassiliev, Serguei; Comte, Pascal; Mahboob, Abdullah
  • Biochemistry, Vol. 49, Issue 9
  • DOI: 10.1021/bi901900s

Oxygen-evolving complex of photosystem II: correlating structure with spectroscopy
journal, January 2014

  • Pokhrel, Ravi; Brudvig, Gary W.
  • Physical Chemistry Chemical Physics, Vol. 16, Issue 24
  • DOI: 10.1039/c4cp00493k

In vivo bicarbonate requirement for water oxidation by Photosystem II in the hypercarbonate-requiring cyanobacterium Arthrospira maxima
journal, November 2007


Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å
journal, April 2011

  • Umena, Yasufumi; Kawakami, Keisuke; Shen, Jian-Ren
  • Nature, Vol. 473, Issue 7345
  • DOI: 10.1038/nature09913

Reflections on substrate water and dioxygen formation
journal, August 2013

  • Cox, Nicholas; Messinger, Johannes
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1827, Issue 8-9
  • DOI: 10.1016/j.bbabio.2013.01.013

Engineering of the protein environment around the redox-active TyrZ in photosystem II : The role of F186 and P162 in the D1 protein of Synechocystis 6803
journal, October 2001


Water in Photosystem II: Structural, functional and mechanistic considerations
journal, January 2014


Investigation of substrate water interactions at the high-affinity Mn site in the photosystem II oxygen-evolving complex
journal, October 2007

  • Singh, Sonita; Debus, Richard J.; Wydrzynski, Tom
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 363, Issue 1494
  • DOI: 10.1098/rstb.2007.2219

Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature
journal, February 2013


Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser
journal, July 2014

  • Kupitz, Christopher; Basu, Shibom; Grotjohann, Ingo
  • Nature, Vol. 513, Issue 7517
  • DOI: 10.1038/nature13453

Changes in the Functional and Structural Properties of the Mn Cluster Induced by Replacing the Side Group of the C-Terminus of the D1 Protein of Photosystem II
journal, October 2004

  • Mizusawa, Naoki; Yamanari, Toshihiro; Kimura, Yukihiro
  • Biochemistry, Vol. 43, Issue 46
  • DOI: 10.1021/bi0486076

Structural characteristics of channels and pathways in photosystem II including the identification of an oxygen channel
journal, August 2007


Mutation of Lysine 317 in the D2 Subunit of Photosystem II Alters Chloride Binding and Proton Transport
journal, July 2013

  • Pokhrel, Ravi; Service, Rachel J.; Debus, Richard J.
  • Biochemistry, Vol. 52, Issue 28
  • DOI: 10.1021/bi301700u

Pulsed photoacoustic detection of flash-induced oxygen evolution from intact leaves and its oscillations
journal, July 1988

  • Canaani, O.; Malkin, S.; Mauzerall, D.
  • Proceedings of the National Academy of Sciences, Vol. 85, Issue 13
  • DOI: 10.1073/pnas.85.13.4725

Extended protein/water H-bond networks in photosynthetic water oxidation
journal, August 2012

  • Bondar, Ana-Nicoleta; Dau, Holger
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1817, Issue 8
  • DOI: 10.1016/j.bbabio.2012.03.031

Molecular dynamics simulations reveal highly permeable oxygen exit channels shared with water uptake channels in photosystem II
journal, October 2013

  • Vassiliev, Serguei; Zaraiskaya, Tatiana; Bruce, Doug
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1827, Issue 10
  • DOI: 10.1016/j.bbabio.2013.06.008

Network of Hydrogen Bonds near the Oxygen-Evolving Mn 4 CaO 5 Cluster of Photosystem II Probed with FTIR Difference Spectroscopy
journal, February 2014

  • Service, Rachel J.; Hillier, Warwick; Debus, Richard J.
  • Biochemistry, Vol. 53, Issue 6
  • DOI: 10.1021/bi401450y

Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses
journal, November 2014

  • Suga, Michihiro; Akita, Fusamichi; Hirata, Kunio
  • Nature, Vol. 517, Issue 7532
  • DOI: 10.1038/nature13991

Energetics of a Possible Proton Exit Pathway for Water Oxidation in Photosystem II
journal, February 2006

  • Ishikita, Hiroshi; Saenger, Wolfram; Loll, Bernhard
  • Biochemistry, Vol. 45, Issue 7
  • DOI: 10.1021/bi051615h

Substrate water interactions within the Photosystem II oxygen evolving complex
journal, January 2004

  • Hillier, Warwick; Wydrzynski, Tom
  • Physical Chemistry Chemical Physics, Vol. 6, Issue 20
  • DOI: 10.1039/b407269c

Two Interconvertible Structures that Explain the Spectroscopic Properties of the Oxygen-Evolving Complex of Photosystem II in the S 2 State
journal, August 2012

  • Pantazis, Dimitrios A.; Ames, William; Cox, Nicholas
  • Angewandte Chemie International Edition, Vol. 51, Issue 39
  • DOI: 10.1002/anie.201204705

Natural Variants of Photosystem II Subunit D1 Tune Photochemical Fitness to Solar Intensity
journal, December 2012

  • Vinyard, David J.; Gimpel, Javier; Ananyev, Gennady M.
  • Journal of Biological Chemistry, Vol. 288, Issue 8
  • DOI: 10.1074/jbc.M112.394668

Alternating electron and proton transfer steps in photosynthetic water oxidation
journal, September 2012

  • Klauss, A.; Haumann, M.; Dau, H.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 40
  • DOI: 10.1073/pnas.1206266109

Structural Changes in the Oxygen-Evolving Complex of Photosystem II Induced by the S 1 to S 2 Transition: A Combined XRD and QM/MM Study
journal, October 2014

  • Askerka, Mikhail; Wang, Jimin; Brudvig, Gary W.
  • Biochemistry, Vol. 53, Issue 44
  • DOI: 10.1021/bi5011915

Access channels and methanol binding site to the CaMn4 cluster in Photosystem II based on solvent accessibility simulations, with implications for substrate water access
journal, February 2008

  • Ho, Felix M.; Styring, Stenbjörn
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1777, Issue 2
  • DOI: 10.1016/j.bbabio.2007.08.009

The D1-173 amino acid is a structural determinant of the critical interaction between D1-Tyr161 (Tyr Z ) and D1-His190 in Photosystem II
journal, December 2014

  • Sugiura, Miwa; Ozaki, Yui; Nakamura, Masato
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1837, Issue 12
  • DOI: 10.1016/j.bbabio.2014.08.008

Electronic structure of the oxygen-evolving complex in photosystem II prior to O-O bond formation
journal, August 2014


COOPERATION OF CHARGES IN PHOTOSYNTHETIC O 2 EVOLUTION–I. A LINEAR FOUR STEP MECHANISM
journal, June 1970


Structural and mechanistic investigations of photosystem II through computational methods
journal, January 2012


Photosystem II: The Reaction Center of Oxygenic Photosynthesis
journal, June 2013


In Vitro Random Mutagenesis of the D1 Protein of the Photosystem II Reaction Center Confers Phototolerance on the Cyanobacterium Synechocystis sp. PCC 6803
journal, August 1999

  • Narusaka, Yoshihiro; Narusaka, Mari; Satoh, Kimiyuki
  • Journal of Biological Chemistry, Vol. 274, Issue 33
  • DOI: 10.1074/jbc.274.33.23270

Environment of TyrZ in Photosystem II from Thermosynechococcus elongatus in which PsbA2 Is the D1 Protein
journal, April 2012

  • Sugiura, Miwa; Ogami, Shogo; Kusumi, Mai
  • Journal of Biological Chemistry, Vol. 287, Issue 16
  • DOI: 10.1074/jbc.M112.340323

Protein ligation of the photosynthetic oxygen-evolving center
journal, February 2008


Substrate–water exchange in photosystem II is arrested before dioxygen formation
journal, July 2014

  • Nilsson, Håkan; Rappaport, Fabrice; Boussac, Alain
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms5305