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Title: A YidC-like Protein in the Archaeal Plasma Membrane

Authors:
; ; ; ;
Publication Date:
Research Org.:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities Division; National Institutes of Health (NIH)
OSTI Identifier:
1337420
Alternate Identifier(s):
OSTI ID: 1250987; OSTI ID: 1259889
Grant/Contract Number:  
AC02-06CH11357; P41 GM103403; U01 GM094588; R01 GM086487
Resource Type:
Published Article
Journal Name:
Structure
Additional Journal Information:
Journal Name: Structure Journal Volume: 23 Journal Issue: 9; Journal ID: ISSN 0969-2126
Publisher:
Elsevier
Country of Publication:
United Kingdom
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Borowska, Marta T., Dominik, Pawel K., Anghel, S. Andrei, Kossiakoff, Anthony A., and Keenan, Robert J. A YidC-like Protein in the Archaeal Plasma Membrane. United Kingdom: N. p., 2015. Web. doi:10.1016/j.str.2015.06.025.
Borowska, Marta T., Dominik, Pawel K., Anghel, S. Andrei, Kossiakoff, Anthony A., & Keenan, Robert J. A YidC-like Protein in the Archaeal Plasma Membrane. United Kingdom. https://doi.org/10.1016/j.str.2015.06.025
Borowska, Marta T., Dominik, Pawel K., Anghel, S. Andrei, Kossiakoff, Anthony A., and Keenan, Robert J. Tue . "A YidC-like Protein in the Archaeal Plasma Membrane". United Kingdom. https://doi.org/10.1016/j.str.2015.06.025.
@article{osti_1337420,
title = {A YidC-like Protein in the Archaeal Plasma Membrane},
author = {Borowska, Marta T. and Dominik, Pawel K. and Anghel, S. Andrei and Kossiakoff, Anthony A. and Keenan, Robert J.},
abstractNote = {},
doi = {10.1016/j.str.2015.06.025},
journal = {Structure},
number = 9,
volume = 23,
place = {United Kingdom},
year = {Tue Sep 01 00:00:00 EDT 2015},
month = {Tue Sep 01 00:00:00 EDT 2015}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1016/j.str.2015.06.025

Citation Metrics:
Cited by: 48 works
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Works referenced in this record:

Tail-anchor targeting by a Get3 tetramer: the structure of an archaeal homologue: A tetrameric model for Get3 tail-anchor targeting
journal, November 2011

  • Suloway, Christian JM; Rome, Michael E.; Clemons, William M.
  • The EMBO Journal, Vol. 31, Issue 3
  • DOI: 10.1038/emboj.2011.433

3D domain swapping: As domains continue to swap
journal, June 2002

  • Liu, Yanshun; Eisenberg, David
  • Protein Science, Vol. 11, Issue 6
  • DOI: 10.1110/ps.0201402

ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information
journal, January 2003


A Conserved Archaeal Pathway for Tail-Anchored Membrane Protein Insertion
journal, July 2011


Evolution of Mitochondrial Oxa Proteins from Bacterial YidC
journal, April 2005

  • Preuss, Marc; Ott, Martin; Funes, Soledad
  • Journal of Biological Chemistry, Vol. 280, Issue 13
  • DOI: 10.1074/jbc.M414093200

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
journal, March 2010

  • Guindon, Stéphane; Dufayard, Jean-François; Lefort, Vincent
  • Systematic Biology, Vol. 59, Issue 3
  • DOI: 10.1093/sysbio/syq010

Structural basis of signal-sequence recognition by the signal recognition particle
journal, February 2011

  • Hainzl, Tobias; Huang, Shenghua; Meriläinen, Gitte
  • Nature Structural & Molecular Biology, Vol. 18, Issue 3
  • DOI: 10.1038/nsmb.1994

The GET Complex Mediates Insertion of Tail-Anchored Proteins into the ER Membrane
journal, August 2008


Structural basis of Sec-independent membrane protein insertion by YidC
journal, April 2014

  • Kumazaki, Kaoru; Chiba, Shinobu; Takemoto, Mizuki
  • Nature, Vol. 509, Issue 7501
  • DOI: 10.1038/nature13167

Allosteric control of ligand-binding affinity using engineered conformation-specific effector proteins
journal, March 2011

  • Rizk, Shahir S.; Paduch, Marcin; Heithaus, John H.
  • Nature Structural & Molecular Biology, Vol. 18, Issue 4
  • DOI: 10.1038/nsmb.2002

Dynamic Disulfide Scanning of the Membrane-inserting Pf3 Coat Protein Reveals Multiple YidC Substrate Contacts
journal, February 2012

  • Klenner, Christian; Kuhn, Andreas
  • Journal of Biological Chemistry, Vol. 287, Issue 6
  • DOI: 10.1074/jbc.M111.307223

Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
journal, December 2014

  • Kumazaki, Kaoru; Kishimoto, Toshiki; Furukawa, Arata
  • Scientific Reports, Vol. 4, Issue 1
  • DOI: 10.1038/srep07299

YidC, the Escherichia coli homologue of mitochondrial Oxa1p, is a component of the Sec translocase
journal, February 2000

  • Scotti, Pier A.; Urbanus, Malene L.; Brunner, Josef
  • The EMBO Journal, Vol. 19, Issue 4
  • DOI: 10.1093/emboj/19.4.542

Generation of ribosome nascent chain complexes for structural and functional studies
journal, June 2007


Oxa1 Directly Interacts with Atp9 and Mediates Its Assembly into the Mitochondrial F 1 F o -ATP Synthase Complex
journal, May 2007

  • Jia, Lixia; Dienhart, Mary K.; Stuart, Rosemary A.
  • Molecular Biology of the Cell, Vol. 18, Issue 5
  • DOI: 10.1091/mbc.e06-10-0925

Phage Display Selections for Affinity Reagents to Membrane Proteins in Nanodiscs
book, January 2015


Predicting coiled coils from protein sequences
journal, May 1991


The Conserved Third Transmembrane Segment of YidC Contacts Nascent Escherichia coli Inner Membrane Proteins
journal, December 2008

  • Yu, Zhong; Koningstein, Gregory; Pop, Ana
  • Journal of Biological Chemistry, Vol. 283, Issue 50
  • DOI: 10.1074/jbc.M804344200

Interaction of Streptococcus mutans YidC1 and YidC2 with Translating and Nontranslating Ribosomes
journal, October 2013

  • Wu, Zht Cheng; de Keyzer, Jeanine; Berrelkamp-Lahpor, Greetje A.
  • Journal of Bacteriology, Vol. 195, Issue 19
  • DOI: 10.1128/JB.00792-13

The evolution of YidC/Oxa/Alb3 family in the three domains of life: a phylogenomic analysis
journal, January 2009

  • Zhang, Yu-Juan; Tian, Hai-Feng; Wen, Jian-Fan
  • BMC Evolutionary Biology, Vol. 9, Issue 1
  • DOI: 10.1186/1471-2148-9-137

Elucidating the Native Architecture of the YidC: Ribosome Complex
journal, November 2013

  • Kedrov, Alexej; Sustarsic, Marko; de Keyzer, Jeanine
  • Journal of Molecular Biology, Vol. 425, Issue 22
  • DOI: 10.1016/j.jmb.2013.07.042

Membrane Protein Insertion at the Endoplasmic Reticulum
journal, November 2011


The Sec-independent Function of Escherichia coli YidC Is Evolutionary-conserved and Essential
journal, April 2005

  • van Bloois, Edwin; Nagamori, Shushi; Koningstein, Gregory
  • Journal of Biological Chemistry, Vol. 280, Issue 13
  • DOI: 10.1074/jbc.M414094200

Phylogenetic and structural analyses of the oxa1 family of protein translocases
journal, November 2001


YidC/Oxa1p/Alb3: evolutionarily conserved mediators of membrane protein assembly
journal, July 2001


Ribosome binding to the Oxa1 complex facilitates co-translational protein insertion in mitochondria
journal, December 2003


XDS
journal, January 2010

  • Kabsch, Wolfgang
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2
  • DOI: 10.1107/S0907444909047337

Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli
journal, August 2002

  • Chin, J. W.; Martin, A. B.; King, D. S.
  • Proceedings of the National Academy of Sciences, Vol. 99, Issue 17, p. 11020-11024
  • DOI: 10.1073/pnas.172226299

The membrane insertase YidC
journal, August 2014

  • Dalbey, Ross E.; Kuhn, Andreas; Zhu, Lu
  • Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1843, Issue 8
  • DOI: 10.1016/j.bbamcr.2013.12.022

The YidC/Oxa1/Alb3 protein family: common principles and distinct features
journal, November 2012

  • Saller, Manfred J.; Wu, Zht Cheng; de Keyzer, Jeanine
  • Biological Chemistry, Vol. 393, Issue 11
  • DOI: 10.1515/hsz-2012-0199

DaliLite workbench for protein structure comparison
journal, June 2000


Enzymatic assembly of DNA molecules up to several hundred kilobases
journal, April 2009

  • Gibson, Daniel G.; Young, Lei; Chuang, Ray-Yuan
  • Nature Methods, Vol. 6, Issue 5, p. 343-345
  • DOI: 10.1038/nmeth.1318

Recognition of a signal peptide by the signal recognition particle
journal, April 2010

  • Janda, Claudia Y.; Li, Jade; Oubridge, Chris
  • Nature, Vol. 465, Issue 7297
  • DOI: 10.1038/nature08870

Signal Recognition Particle: An Essential Protein-Targeting Machine
journal, June 2013


Toward the structural genomics of complexes: Crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis
journal, May 2006

  • Strong, M.; Sawaya, M. R.; Wang, S.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 21
  • DOI: 10.1073/pnas.0602606103

The Role of the Strictly Conserved Positively Charged Residue Differs among the Gram-positive, Gram-negative, and Chloroplast YidC Homologs
journal, December 2014

  • Chen, Yuanyuan; Soman, Raunak; Shanmugam, Sri Karthika
  • Journal of Biological Chemistry, Vol. 289, Issue 51
  • DOI: 10.1074/jbc.M114.595082

ProtTest 3: fast selection of best-fit models of protein evolution
journal, February 2011


xia2 : an expert system for macromolecular crystallography data reduction
journal, December 2009


trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
journal, June 2009


F 1 F 0 ATP synthase subunit c is targeted by the SRP to YidC in the E. coli inner membrane
journal, September 2004


The complex process of GETting tail-anchored membrane proteins to the ER
journal, April 2012

  • Chartron, Justin W.; Clemons, William M.; Suloway, Christian JM
  • Current Opinion in Structural Biology, Vol. 22, Issue 2
  • DOI: 10.1016/j.sbi.2012.03.001

Features and development of Coot
journal, March 2010

  • Emsley, P.; Lohkamp, B.; Scott, W. G.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
  • DOI: 10.1107/S0907444910007493

Protein production by auto-induction in high-density shaking cultures
journal, May 2005


Structure of the Get3 targeting factor in complex with its membrane protein cargo
journal, March 2015


Membrane Topology of the 60-kDa Oxa1p Homologue fromEscherichia coli
journal, November 1998

  • Sääf, Annika; Monné, Magnus; de Gier, Jan-Willem
  • Journal of Biological Chemistry, Vol. 273, Issue 46
  • DOI: 10.1074/jbc.273.46.30415

Tail-anchored membrane protein insertion into the endoplasmic reticulum
journal, November 2011

  • Hegde, Ramanujan S.; Keenan, Robert J.
  • Nature Reviews Molecular Cell Biology, Vol. 12, Issue 12
  • DOI: 10.1038/nrm3226

WRB is the receptor for TRC40/Asna1-mediated insertion of tail-anchored proteins into the ER membrane
journal, April 2011

  • Vilardi, Fabio; Lorenz, Holger; Dobberstein, Bernhard
  • Journal of Cell Science, Vol. 124, Issue 8
  • DOI: 10.1242/jcs.084277

PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
  • DOI: 10.1107/S0907444909052925

The thylakoid membrane protein ALB3 associates with the cpSecY-translocase in Arabidopsis thaliana
journal, December 2002

  • Klostermann, Eva; DROSTE gen. HELLING, Imke; Carde, Jean-Pierre
  • Biochemical Journal, Vol. 368, Issue 3
  • DOI: 10.1042/bj20021291

Remote Origins of Tail-Anchored Proteins
journal, April 2010


T Cell Receptor-Like Recognition of Tumor In Vivo by Synthetic Antibody Fragment
journal, August 2012


Model for signal sequence recognition from amino-acid sequence of 54K subunit of signal recognition particle
journal, August 1989

  • Bernstein, Harris D.; Poritz, Mark A.; Strub, Katharina
  • Nature, Vol. 340, Issue 6233
  • DOI: 10.1038/340482a0

The Mechanism of Tail-Anchored Protein Insertion into the ER Membrane
journal, September 2011


A portrait of the GET pathway as a surprisingly complicated young man
journal, October 2012


The mechanism of membrane-associated steps in tail-anchored protein insertion
journal, August 2011

  • Mariappan, Malaiyalam; Mateja, Agnieszka; Dobosz, Malgorzata
  • Nature, Vol. 477, Issue 7362
  • DOI: 10.1038/nature10362

T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
journal, September 2000

  • Notredame, Cédric; Higgins, Desmond G.; Heringa, Jaap
  • Journal of Molecular Biology, Vol. 302, Issue 1
  • DOI: 10.1006/jmbi.2000.4042

Role of YidC in folding of polytopic membrane proteins
journal, April 2004

  • Nagamori, Shushi; Smirnova, Irina N.; Kaback, H. Ronald
  • Journal of Cell Biology, Vol. 165, Issue 1
  • DOI: 10.1083/jcb.200402067

YidC mediates membrane protein insertion in bacteria
journal, August 2000

  • Samuelson, James C.; Chen, Minyong; Jiang, Fenglei
  • Nature, Vol. 406, Issue 6796
  • DOI: 10.1038/35020586

F1F0 ATP synthase subunit c is a substrate of the novel YidC pathway for membrane protein biogenesis
journal, April 2004

  • van der Laan, Martin; Bechtluft, Philipp; Kol, Stef
  • Journal of Cell Biology, Vol. 165, Issue 2
  • DOI: 10.1083/jcb.200402100

Sec‐dependent membrane protein insertion: sequential interaction of nascent FtsQ with SecY and YidC
journal, June 2001


Phaser crystallographic software
journal, July 2007

  • McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
  • Journal of Applied Crystallography, Vol. 40, Issue 4
  • DOI: 10.1107/S0021889807021206