Comparative analysis of secretomes from Ectomycorrhizal fungi with an emphasis on small-secreted proteins

Pellegrin, Clement; Morin, Emmanuelle; Martin, Francis M.; Veneault-Fourrey, Claire

doi:10.3389/fmicb.2015.01278

Title: Comparative analysis of secretomes from Ectomycorrhizal fungi with an emphasis on small-secreted proteins

Journal Article · 17 November 2015 · Frontiers in Microbiology

DOI: https://doi.org/10.3389/fmicb.2015.01278 · OSTI ID:1241128

Pellegrin, Clement ^[1]; Morin, Emmanuelle ^[2]; Martin, Francis M. ^[2]; Veneault-Fourrey, Claire ^[3]

Univ. de Lorraine, Vandoeuvre-les-Nancy (France); Institut National de la Recherche Agronomique, Champenoux (France); University de Lorraine, France
Institut National de la Recherche Agronomique, Champenoux (France)
Univ. de Lorraine, Vandoeuvre-les-Nancy (France); Institut National de la Recherche Agronomique, Champenoux (France)

Fungi are major players in the carbon cycle in forest ecosystems due to the wide range of interactions they have with plants either through soil degradation processes by litter decayers or biotrophic interactions with pathogenic and ectomycorrhizal symbionts. Secretion of fungal proteins mediates these interactions by allowing the fungus to interact with its environment and/or host. Ectomycorrhizal (ECM) symbiosis independently appeared several times throughout evolution and involves approximately 80% of trees. Despite extensive physiological studies on ECM symbionts, little is known about the composition and specificities of their secretomes. In this study, we used a bioinformatics pipeline to predict and analyze the secretomes of 49 fungal species, including 11 ECM fungi, wood and soil decayers and pathogenic fungi to tackle the following questions: (1) Are there differences between the secretomes of saprophytic and ECM fungi? (2) Are small-secreted proteins (SSPs) more abundant in biotrophic fungi than in saprophytic fungi? and (3) Are there SSPs shared between ECM, saprotrophic and pathogenic fungi? We showed that the number of predicted secreted proteins is similar in the surveyed species, independently of their lifestyle. The secretome from ECM fungi is characterized by a restricted number of secreted CAZymes, but their repertoires of secreted proteases and lipases are similar to those of saprotrophic fungi. Focusing on SSPs, we showed that the secretome of ECM fungi is enriched in SSPs compared with other species. Most of the SSPs are coded by orphan genes with no known PFAM domain or similarities to known sequences in databases. Finally, based on the clustering analysis, we identified shared- and lifestyle-specific SSPs between saprotrophic and ECM fungi. The presence of SSPs is not limited to fungi interacting with living plants as the genome of saprotrophic fungi also code for numerous SSPs. As a result, ECM fungi shared lifestyle-specific SSPs likely involved in symbiosis that are good candidates for further functional analyses.

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Research Organization:: Univ. of California, Berkeley, CA (United States). Joint Genome Inst.

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1241128

Journal Information:: Frontiers in Microbiology, Journal Name: Frontiers in Microbiology Vol. 6; ISSN 1664-302X

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: United States

Language:: English

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Title: Comparative analysis of secretomes from Ectomycorrhizal fungi with an emphasis on small-secreted proteins

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