Label-free DNA imaging in vivo with stimulated Raman scattering microscopy
Abstract
Label-free DNA imaging is highly desirable in biology and medicine to perform live imaging without affecting cell function and to obtain instant histological tissue examination during surgical procedures. Here we show a label-free DNA imaging method with stimulated Raman scattering (SRS) microscopy for visualization of the cell nuclei in live animals and intact fresh human tissues with subcellular resolution. Relying on the distinct Raman spectral features of the carbon-hydrogen bonds in DNA, the distribution of DNA is retrieved from the strong background of proteins and lipids by linear decomposition of SRS images at three optimally selected Raman shifts. Based on changes on DNA condensation in the nucleus, we were able to capture chromosome dynamics during cell division both in vitro and in vivo. We tracked mouse skin cell proliferation, induced by drug treatment, through in vivo counting of the mitotic rate. Moreover, we demonstrated a label-free histology method for human skin cancer diagnosis that provides comparable results to other conventional tissue staining methods such as H&E. In conclusion, our approach exhibits higher sensitivity than SRS imaging of DNA in the fingerprint spectral region. Compared with spontaneous Raman imaging of DNA, our approach is three orders of magnitude faster, allowing bothmore »
- Authors:
-
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138,
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138,
- Cutaneous Biology Research Center, Department of Dermatology, Massachusetts General Hospital, Harvard Medical School, Charlestown, MA 02129,
- Department of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114,
- Department of Dermatology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114
- Publication Date:
- Research Org.:
- Harvard Univ., Cambridge, MA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1235135
- Alternate Identifier(s):
- OSTI ID: 1349042
- Grant/Contract Number:
- FG02-09ER16104; SC0001548
- Resource Type:
- Published Article
- Journal Name:
- Proceedings of the National Academy of Sciences of the United States of America
- Additional Journal Information:
- Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Volume: 112 Journal Issue: 37; Journal ID: ISSN 0027-8424
- Publisher:
- Proceedings of the National Academy of Sciences
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES; cell division; label-free histology; mitotic rate; skin cancer; stimulated Raman scattering microscopy
Citation Formats
Lu, Fa-Ke, Basu, Srinjan, Igras, Vivien, Hoang, Mai P., Ji, Minbiao, Fu, Dan, Holtom, Gary R., Neel, Victor A., Freudiger, Christian W., Fisher, David E., and Xie, X. Sunney. Label-free DNA imaging in vivo with stimulated Raman scattering microscopy. United States: N. p., 2015.
Web. doi:10.1073/pnas.1515121112.
Lu, Fa-Ke, Basu, Srinjan, Igras, Vivien, Hoang, Mai P., Ji, Minbiao, Fu, Dan, Holtom, Gary R., Neel, Victor A., Freudiger, Christian W., Fisher, David E., & Xie, X. Sunney. Label-free DNA imaging in vivo with stimulated Raman scattering microscopy. United States. https://doi.org/10.1073/pnas.1515121112
Lu, Fa-Ke, Basu, Srinjan, Igras, Vivien, Hoang, Mai P., Ji, Minbiao, Fu, Dan, Holtom, Gary R., Neel, Victor A., Freudiger, Christian W., Fisher, David E., and Xie, X. Sunney. Mon .
"Label-free DNA imaging in vivo with stimulated Raman scattering microscopy". United States. https://doi.org/10.1073/pnas.1515121112.
@article{osti_1235135,
title = {Label-free DNA imaging in vivo with stimulated Raman scattering microscopy},
author = {Lu, Fa-Ke and Basu, Srinjan and Igras, Vivien and Hoang, Mai P. and Ji, Minbiao and Fu, Dan and Holtom, Gary R. and Neel, Victor A. and Freudiger, Christian W. and Fisher, David E. and Xie, X. Sunney},
abstractNote = {Label-free DNA imaging is highly desirable in biology and medicine to perform live imaging without affecting cell function and to obtain instant histological tissue examination during surgical procedures. Here we show a label-free DNA imaging method with stimulated Raman scattering (SRS) microscopy for visualization of the cell nuclei in live animals and intact fresh human tissues with subcellular resolution. Relying on the distinct Raman spectral features of the carbon-hydrogen bonds in DNA, the distribution of DNA is retrieved from the strong background of proteins and lipids by linear decomposition of SRS images at three optimally selected Raman shifts. Based on changes on DNA condensation in the nucleus, we were able to capture chromosome dynamics during cell division both in vitro and in vivo. We tracked mouse skin cell proliferation, induced by drug treatment, through in vivo counting of the mitotic rate. Moreover, we demonstrated a label-free histology method for human skin cancer diagnosis that provides comparable results to other conventional tissue staining methods such as H&E. In conclusion, our approach exhibits higher sensitivity than SRS imaging of DNA in the fingerprint spectral region. Compared with spontaneous Raman imaging of DNA, our approach is three orders of magnitude faster, allowing both chromatin dynamic studies and label-free optical histology in real time.},
doi = {10.1073/pnas.1515121112},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
number = 37,
volume = 112,
place = {United States},
year = {Mon Aug 31 00:00:00 EDT 2015},
month = {Mon Aug 31 00:00:00 EDT 2015}
}
https://doi.org/10.1073/pnas.1515121112
Web of Science
Works referenced in this record:
Selection of analytical wavelengths for multicomponent spectrophotometric determinations
journal, November 1985
- Frans, S. D.; Harris, J. M.
- Analytical Chemistry, Vol. 57, Issue 13
Establishment of human tumor xenografts in immunodeficient mice
journal, February 2007
- Morton, Christopher L.; Houghton, Peter J.
- Nature Protocols, Vol. 2, Issue 2
Biochemical correlation of Raman spectra of normal, benign and malignant breast tissues: A spectral deconvolution study
journal, July 2009
- Chowdary, M. V. P.; Kalyan Kumar, K.; Mathew, Stanley
- Biopolymers, Vol. 91, Issue 7
Noninvasive visualization of tumors in rodent dorsal skin window chambers
journal, October 1999
- Huang, Qian; Shan, Siqing; Braun, Rod D.
- Nature Biotechnology, Vol. 17, Issue 10
DNA labeling in living cells
journal, September 2005
- Martin, Robert M.; Leonhardt, Heinrich; Cardoso, M. Cristina
- Cytometry Part A, Vol. 67A, Issue 1
Live-cell imaging of alkyne-tagged small biomolecules by stimulated Raman scattering
journal, March 2014
- Wei, Lu; Hu, Fanghao; Shen, Yihui
- Nature Methods, Vol. 11, Issue 4
Raman Spectroscopy Analysis of the Biochemical Characteristics of Molecules Associated with the Malignant Transformation of Gastric Mucosa
journal, April 2014
- Chen, Yao; Dai, Jianhua; Zhou, Xueqian
- PLoS ONE, Vol. 9, Issue 4
Coherent Raman spectro-imaging with laser frequency combs
journal, October 2013
- Ideguchi, Takuro; Holzner, Simon; Bernhardt, Birgitta
- Nature, Vol. 502, Issue 7471
Intra-tumour heterogeneity: a looking glass for cancer?
journal, April 2012
- Marusyk, Andriy; Almendro, Vanessa; Polyak, Kornelia
- Nature Reviews Cancer, Vol. 12, Issue 5
Reliable Cell Segmentation Based on Spectral Phasor Analysis of Hyperspectral Stimulated Raman Scattering Imaging Data
journal, April 2014
- Fu, Dan; Xie, X. Sunney
- Analytical Chemistry, Vol. 86, Issue 9
Non-melanoma skin cancer
journal, February 2010
- Madan, Vishal; Lear, John T.; Szeimies, Rolf-Markus
- The Lancet, Vol. 375, Issue 9715
Label-Free Live-Cell Imaging with Confocal Raman Microscopy
journal, January 2012
- Klein, Katharina; Gigler, Alexander M.; Aschenbrenner, Thomas
- Biophysical Journal, Vol. 102, Issue 2
Method of Wavelength Selection for Partial Least Squares
journal, January 1997
- Osborne, Scott D.; Künnemeyer, Rainer; Osborne, Scott D.
- The Analyst, Vol. 122, Issue 12
Rapid, Label-Free Detection of Brain Tumors with Stimulated Raman Scattering Microscopy
journal, September 2013
- Ji, M.; Orringer, D. A.; Freudiger, C. W.
- Science Translational Medicine, Vol. 5, Issue 201
In vivo optical molecular imaging and analysis in mice using dorsal window chamber models applied to hypoxia, vasculature and fluorescent reporters
journal, August 2011
- Palmer, Gregory M.; Fontanella, Andrew N.; Shan, Siqing
- Nature Protocols, Vol. 6, Issue 9
Vibrational imaging based on stimulated Raman scattering microscopy
journal, March 2009
- Nandakumar, P.; Kovalev, A.; Volkmer, A.
- New Journal of Physics, Vol. 11, Issue 3
High-resolution multiphoton tomography of human skin with subcellular spatial resolution and picosecond time resolution
journal, January 2003
- Koenig, Karsten; Riemann, Iris
- Journal of Biomedical Optics, Vol. 8, Issue 3
HETEROGENEITY OF MITOTIC ACTIVITY IN BREAST CANCER
journal, November 1996
- Jannink, I.; Risberg, B.; Diest, P. J. van
- Histopathology, Vol. 29, Issue 5
Multicolored stain-free histopathology with coherent Raman imaging
journal, August 2012
- Freudiger, Christian W.; Pfannl, Rolf; Orringer, Daniel A.
- Laboratory Investigation, Vol. 92, Issue 10
Imaging the intracellular distribution of tyrosine kinase inhibitors in living cells with quantitative hyperspectral stimulated Raman scattering
journal, May 2014
- Fu, Dan; Zhou, Jing; Zhu, Wenjing Suzanne
- Nature Chemistry, Vol. 6, Issue 7
Raman spectroscopy for DNA quantification in cell nucleus: Raman Spectroscopy and DNA Content
journal, October 2014
- Okotrub, K. A.; Surovtsev, N. V.; Semeshin, V. F.
- Cytometry Part A, Vol. 87, Issue 1
The maintenance of chromosome structure: positioning and functioning of SMC complexes
journal, August 2014
- Jeppsson, Kristian; Kanno, Takaharu; Shirahige, Katsuhiko
- Nature Reviews Molecular Cell Biology, Vol. 15, Issue 9
The New Seventh Edition American Joint Committee on Cancer Staging of Cutaneous Non-Melanoma Skin Cancer: A Critical Review
journal, January 2011
- Warner, Christina L.; Cockerell, Clay J.
- American Journal of Clinical Dermatology, Vol. 12, Issue 3
Studies on the Mechanisms Involved in Multistage Carcinogenesis in Mouse Skin
journal, January 1982
- Slaga, T. J.; Fischer, S. M.; Weeks, C. E.
- Journal of Cellular Biochemistry, Vol. 18, Issue 1
Label-Free Biomedical Imaging with High Sensitivity by Stimulated Raman Scattering Microscopy
journal, December 2008
- Freudiger, Christian W.; Min, Wei; Saar, Brian G.
- Science, Vol. 322, Issue 5909
Multicolor stimulated Raman scattering microscopy
journal, August 2012
- Lu, Fa-Ke; Ji, Minbiao; Fu, Dan
- Molecular Physics, Vol. 110, Issue 15-16
Background-Free Stimulated Raman Spectroscopy and Microscopy
journal, February 2014
- Berto, Pascal; Andresen, Esben Ravn; Rigneault, Hervé
- Physical Review Letters, Vol. 112, Issue 5
Cholesteryl Ester Accumulation Induced by PTEN Loss and PI3K/AKT Activation Underlies Human Prostate Cancer Aggressiveness
journal, March 2014
- Yue, Shuhua; Li, Junjie; Lee, Seung-Young
- Cell Metabolism, Vol. 19, Issue 3
Optimal Wavelength Selection for Quantitative Analysis
journal, February 1986
- Sasaki, K.; Kawata, S.; Minami, S.
- Applied Spectroscopy, Vol. 40, Issue 2
High-speed molecular spectral imaging of tissue with stimulated Raman scattering
journal, November 2012
- Ozeki, Yasuyuki; Umemura, Wataru; Otsuka, Yoichi
- Nature Photonics, Vol. 6, Issue 12
Early detection of cervical neoplasia by Raman spectroscopy
journal, January 2007
- Jess, Philip R. T.; Smith, Daniel D. W.; Mazilu, Michael
- International Journal of Cancer, Vol. 121, Issue 12
Raman and Infrared Microspectral Imaging of Mitotic Cells
journal, January 2006
- Matthäus, Christian; Boydston-White, Susie; Miljković, Miloš
- Applied Spectroscopy, Vol. 60, Issue 1
A transparent access chamber for the rat dorsal skin fold
journal, November 1979
- Papenfuss, Heinz D.; Gross, Joseph F.; Intaglietta, Marcos
- Microvascular Research, Vol. 18, Issue 3
Highly specific label-free molecular imaging with spectrally tailored excitation-stimulated Raman scattering (STE-SRS) microscopy
journal, January 2011
- Freudiger, Christian W.; Min, Wei; Holtom, Gary R.
- Nature Photonics, Vol. 5, Issue 2
Mitotic and G2 Checkpoint Control: Regulation of 14-3-3 Protein Binding by Phosphorylation of Cdc25C on Serine-216
journal, September 1997
- Peng, C.
- Science, Vol. 277, Issue 5331
In vivo optical monitoring of tissue pathologies and diseases with vibrational contrast
journal, November 2009
- Bégin, Steve; Bélanger, Erik; Laffray, Sophie
- Journal of Biophotonics, Vol. 2, Issue 11
Near-infrared Raman spectroscopy for optical diagnosis of lung cancer
journal, October 2003
- Huang, Zhiwei; McWilliams, Annette; Lui, Harvey
- International Journal of Cancer, Vol. 107, Issue 6
Microsecond scale vibrational spectroscopic imaging by multiplex stimulated Raman scattering microscopy
journal, March 2015
- Liao, Chien-Sheng; Slipchenko, Mikhail N.; Wang, Ping
- Light: Science & Applications, Vol. 4, Issue 3
Chromatin dynamics during cellular reprogramming
journal, October 2013
- Apostolou, Effie; Hochedlinger, Konrad
- Nature, Vol. 502, Issue 7472
Patient-derived tumour xenografts as models for oncology drug development
journal, April 2012
- Tentler, John J.; Tan, Aik Choon; Weekes, Colin D.
- Nature Reviews Clinical Oncology, Vol. 9, Issue 6
Studying single living cells and chromosomes by confocal Raman microspectroscopy
journal, September 1990
- Puppels, G. J.; de Mul, F. F. M.; Otto, C.
- Nature, Vol. 347, Issue 6290
In situ visualization of damaged DNA in human sperm by Raman microspectroscopy
journal, April 2011
- Mallidis, C.; Wistuba, J.; Bleisteiner, B.
- Human Reproduction, Vol. 26, Issue 7
Label-Free Live-Cell Imaging of Nucleic Acids Using Stimulated Raman Scattering Microscopy
journal, February 2012
- Zhang, Xu; Roeffaers, Maarten B. J.; Basu, Srinjan
- ChemPhysChem, Vol. 13, Issue 4
Analysis of Mitosis and Antimitotic Drug Responses in Tumors by In Vivo Microscopy and Single-Cell Pharmacodynamics
journal, June 2011
- Orth, James D.; Kohler, Rainer H.; Foijer, Floris
- Cancer Research, Vol. 71, Issue 13
A Rapid Method of Total Lipid Extraction and Purification
journal, January 1959
- Bligh, E. G.; Dyer, W. J.
- Canadian Journal of Biochemistry and Physiology, Vol. 37, Issue 1
Quantitative 3D molecular cutaneous absorption in human skin using label free nonlinear microscopy
journal, February 2015
- Chen, Xueqin; Grégoire, Sébastien; Formanek, Florian
- Journal of Controlled Release, Vol. 200
Mediator and cohesin connect gene expression and chromatin architecture
journal, August 2010
- Kagey, Michael H.; Newman, Jamie J.; Bilodeau, Steve
- Nature, Vol. 467, Issue 7314
Quantitative Chemical Imaging with Multiplex Stimulated Raman Scattering Microscopy
journal, February 2012
- Fu, Dan; Lu, Fa-Ke; Zhang, Xu
- Journal of the American Chemical Society, Vol. 134, Issue 8
Video-Rate Molecular Imaging in Vivo with Stimulated Raman Scattering
journal, December 2010
- Saar, B. G.; Freudiger, C. W.; Reichman, J.
- Science, Vol. 330, Issue 6009
Raman spectroscopy can discriminate distinct glioma subtypes as defined by RNA expression profiling: Raman spectroscopy identifies glioma subtypes
journal, August 2013
- Jachtenberg, Jan-Willem; Schut, Tom Bakker; French, Pim
- Journal of Raman Spectroscopy, Vol. 44, Issue 9
Nonresonant Confocal Raman Imaging of DNA and Protein Distribution in Apoptotic Cells
journal, June 2003
- Uzunbajakava, N.; Lenferink, A.; Kraan, Y.
- Biophysical Journal, Vol. 84, Issue 6
Raman Spectroscopy of Protein and Nucleic acid Assemblies
journal, June 1999
- Thomas, George J.
- Annual Review of Biophysics and Biomolecular Structure, Vol. 28, Issue 1