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Title: The Ocean Sampling Day Consortium

Abstract

In this study, Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Authors:
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Publication Date:
Research Org.:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1225000
Grant/Contract Number:  
AC02-06CH11357
Resource Type:
Accepted Manuscript
Journal Name:
GigaScience
Additional Journal Information:
Journal Volume: 4; Journal Issue: 1; Journal ID: ISSN 2047-217X
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
54 ENVIRONMENTAL SCIENCES; 59 BASIC BIOLOGICAL SCIENCES; Ocean Sampling Day; OSD; biodiversity; genomics; health index; bacteria; microorganism; metagenomics; marine; micro B3; standards

Citation Formats

Kopf, Anna, Bicak, Mesude, Kottmann, Renzo, Schnetzer, Julia, Kostadinov, Ivaylo, Lehmann, Katja, Fernandez-Guerra, Antonio, Jeanthon, Christian, Rahav, Eyal, Ullrich, Matthias, Wichels, Antje, Gerdts, Gunnar, Polymenakou, Paraskevi, Kotoulas, Giorgos, Siam, Rania, Abdallah, Rehab Z., Sonnenschein, Eva C., Cariou, Thierry, O’Gara, Fergal, Jackson, Stephen, Orlic, Sandi, Steinke, Michael, Busch, Julia, Duarte, Bernardo, Caçador, Isabel, Canning-Clode, João, Bobrova, Oleksandra, Marteinsson, Viggo, Reynisson, Eyjolfur, Loureiro, Clara Magalhães, Luna, Gian Marco, Quero, Grazia Marina, Löscher, Carolin R., Kremp, Anke, DeLorenzo, Marie E., Øvreås, Lise, Tolman, Jennifer, LaRoche, Julie, Penna, Antonella, Frischer, Marc, Davis, Timothy, Katherine, Barker, Meyer, Christopher P., Ramos, Sandra, Magalhães, Catarina, Jude-Lemeilleur, Florence, Aguirre-Macedo, Ma Leopoldina, Wang, Shiao, Poulton, Nicole, Jones, Scott, Collin, Rachel, Fuhrman, Jed A., Conan, Pascal, Alonso, Cecilia, Stambler, Noga, Goodwin, Kelly, Yakimov, Michael M., Baltar, Federico, Bodrossy, Levente, Van De Kamp, Jodie, Frampton, Dion M. F., Ostrowski, Martin, Van Ruth, Paul, Malthouse, Paul, Claus, Simon, Deneudt, Klaas, Mortelmans, Jonas, Pitois, Sophie, Wallom, David, Salter, Ian, Costa, Rodrigo, Schroeder, Declan C., Kandil, Mahrous M., Amaral, Valentina, Biancalana, Florencia, Santana, Rafael, Pedrotti, Maria Luiza, Yoshida, Takashi, Ogata, Hiroyuki, Ingleton, Tim, Munnik, Kate, Rodriguez-Ezpeleta, Naiara, Berteaux-Lecellier, Veronique, Wecker, Patricia, Cancio, Ibon, Vaulot, Daniel, Bienhold, Christina, Ghazal, Hassan, Chaouni, Bouchra, Essayeh, Soumya, Ettamimi, Sara, Zaid, El Houcine, Boukhatem, Noureddine, Bouali, Abderrahim, Chahboune, Rajaa, Barrijal, Said, Timinouni, Mohammed, El Otmani, Fatima, Bennani, Mohamed, Mea, Marianna, Todorova, Nadezhda, Karamfilov, Ventzislav, ten Hoopen, Petra, Cochrane, Guy, L’Haridon, Stephane, Bizsel, Kemal Can, Vezzi, Alessandro, Lauro, Federico M., Martin, Patrick, Jensen, Rachelle M., Hinks, Jamie, Gebbels, Susan, Rosselli, Riccardo, De Pascale, Fabio, Schiavon, Riccardo, dos Santos, Antonina, Villar, Emilie, Pesant, Stéphane, Cataletto, Bruno, Malfatti, Francesca, Edirisinghe, Ranjith, Silveira, Jorge A. Herrera, Barbier, Michele, Turk, Valentina, Tinta, Tinkara, Fuller, Wayne J., Salihoglu, Ilkay, Serakinci, Nedime, Ergoren, Mahmut Cerkez, Bresnan, Eileen, Iriberri, Juan, Nyhus, Paul Anders Fronth, Bente, Edvardsen, Karlsen, Hans Erik, Golyshin, Peter N., Gasol, Josep M., Moncheva, Snejana, Dzhembekova, Nina, Johnson, Zackary, Sinigalliano, Christopher David, Gidley, Maribeth Louise, Zingone, Adriana, Danovaro, Roberto, Tsiamis, George, Clark, Melody S., Costa, Ana Cristina, El Bour, Monia, Martins, Ana M., Collins, R. Eric, Ducluzeau, Anne-Lise, Martinez, Jonathan, Costello, Mark J., Amaral-Zettler, Linda A., Gilbert, Jack A., Davies, Neil, Field, Dawn, and Glöckner, Frank Oliver. The Ocean Sampling Day Consortium. United States: N. p., 2015. Web. doi:10.1186/s13742-015-0066-5.
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Kopf, Anna, Bicak, Mesude, Kottmann, Renzo, Schnetzer, Julia, Kostadinov, Ivaylo, Lehmann, Katja, Fernandez-Guerra, Antonio, Jeanthon, Christian, Rahav, Eyal, Ullrich, Matthias, Wichels, Antje, Gerdts, Gunnar, Polymenakou, Paraskevi, Kotoulas, Giorgos, Siam, Rania, Abdallah, Rehab Z., Sonnenschein, Eva C., Cariou, Thierry, O’Gara, Fergal, Jackson, Stephen, Orlic, Sandi, Steinke, Michael, Busch, Julia, Duarte, Bernardo, Caçador, Isabel, Canning-Clode, João, Bobrova, Oleksandra, Marteinsson, Viggo, Reynisson, Eyjolfur, Loureiro, Clara Magalhães, Luna, Gian Marco, Quero, Grazia Marina, Löscher, Carolin R., Kremp, Anke, DeLorenzo, Marie E., Øvreås, Lise, Tolman, Jennifer, LaRoche, Julie, Penna, Antonella, Frischer, Marc, Davis, Timothy, Katherine, Barker, Meyer, Christopher P., Ramos, Sandra, Magalhães, Catarina, Jude-Lemeilleur, Florence, Aguirre-Macedo, Ma Leopoldina, Wang, Shiao, Poulton, Nicole, Jones, Scott, Collin, Rachel, Fuhrman, Jed A., Conan, Pascal, Alonso, Cecilia, Stambler, Noga, Goodwin, Kelly, Yakimov, Michael M., Baltar, Federico, Bodrossy, Levente, Van De Kamp, Jodie, Frampton, Dion M. F., Ostrowski, Martin, Van Ruth, Paul, Malthouse, Paul, Claus, Simon, Deneudt, Klaas, Mortelmans, Jonas, Pitois, Sophie, Wallom, David, Salter, Ian, Costa, Rodrigo, Schroeder, Declan C., Kandil, Mahrous M., Amaral, Valentina, Biancalana, Florencia, Santana, Rafael, Pedrotti, Maria Luiza, Yoshida, Takashi, Ogata, Hiroyuki, Ingleton, Tim, Munnik, Kate, Rodriguez-Ezpeleta, Naiara, Berteaux-Lecellier, Veronique, Wecker, Patricia, Cancio, Ibon, Vaulot, Daniel, Bienhold, Christina, Ghazal, Hassan, Chaouni, Bouchra, Essayeh, Soumya, Ettamimi, Sara, Zaid, El Houcine, Boukhatem, Noureddine, Bouali, Abderrahim, Chahboune, Rajaa, Barrijal, Said, Timinouni, Mohammed, El Otmani, Fatima, Bennani, Mohamed, Mea, Marianna, Todorova, Nadezhda, Karamfilov, Ventzislav, ten Hoopen, Petra, Cochrane, Guy, L’Haridon, Stephane, Bizsel, Kemal Can, Vezzi, Alessandro, Lauro, Federico M., Martin, Patrick, Jensen, Rachelle M., Hinks, Jamie, Gebbels, Susan, Rosselli, Riccardo, De Pascale, Fabio, Schiavon, Riccardo, dos Santos, Antonina, Villar, Emilie, Pesant, Stéphane, Cataletto, Bruno, Malfatti, Francesca, Edirisinghe, Ranjith, Silveira, Jorge A. Herrera, Barbier, Michele, Turk, Valentina, Tinta, Tinkara, Fuller, Wayne J., Salihoglu, Ilkay, Serakinci, Nedime, Ergoren, Mahmut Cerkez, Bresnan, Eileen, Iriberri, Juan, Nyhus, Paul Anders Fronth, Bente, Edvardsen, Karlsen, Hans Erik, Golyshin, Peter N., Gasol, Josep M., Moncheva, Snejana, Dzhembekova, Nina, Johnson, Zackary, Sinigalliano, Christopher David, Gidley, Maribeth Louise, Zingone, Adriana, Danovaro, Roberto, Tsiamis, George, Clark, Melody S., Costa, Ana Cristina, El Bour, Monia, Martins, Ana M., Collins, R. Eric, Ducluzeau, Anne-Lise, Martinez, Jonathan, Costello, Mark J., Amaral-Zettler, Linda A., Gilbert, Jack A., Davies, Neil, Field, Dawn, & Glöckner, Frank Oliver. The Ocean Sampling Day Consortium. United States. https://doi.org/10.1186/s13742-015-0066-5
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Kopf, Anna, Bicak, Mesude, Kottmann, Renzo, Schnetzer, Julia, Kostadinov, Ivaylo, Lehmann, Katja, Fernandez-Guerra, Antonio, Jeanthon, Christian, Rahav, Eyal, Ullrich, Matthias, Wichels, Antje, Gerdts, Gunnar, Polymenakou, Paraskevi, Kotoulas, Giorgos, Siam, Rania, Abdallah, Rehab Z., Sonnenschein, Eva C., Cariou, Thierry, O’Gara, Fergal, Jackson, Stephen, Orlic, Sandi, Steinke, Michael, Busch, Julia, Duarte, Bernardo, Caçador, Isabel, Canning-Clode, João, Bobrova, Oleksandra, Marteinsson, Viggo, Reynisson, Eyjolfur, Loureiro, Clara Magalhães, Luna, Gian Marco, Quero, Grazia Marina, Löscher, Carolin R., Kremp, Anke, DeLorenzo, Marie E., Øvreås, Lise, Tolman, Jennifer, LaRoche, Julie, Penna, Antonella, Frischer, Marc, Davis, Timothy, Katherine, Barker, Meyer, Christopher P., Ramos, Sandra, Magalhães, Catarina, Jude-Lemeilleur, Florence, Aguirre-Macedo, Ma Leopoldina, Wang, Shiao, Poulton, Nicole, Jones, Scott, Collin, Rachel, Fuhrman, Jed A., Conan, Pascal, Alonso, Cecilia, Stambler, Noga, Goodwin, Kelly, Yakimov, Michael M., Baltar, Federico, Bodrossy, Levente, Van De Kamp, Jodie, Frampton, Dion M. F., Ostrowski, Martin, Van Ruth, Paul, Malthouse, Paul, Claus, Simon, Deneudt, Klaas, Mortelmans, Jonas, Pitois, Sophie, Wallom, David, Salter, Ian, Costa, Rodrigo, Schroeder, Declan C., Kandil, Mahrous M., Amaral, Valentina, Biancalana, Florencia, Santana, Rafael, Pedrotti, Maria Luiza, Yoshida, Takashi, Ogata, Hiroyuki, Ingleton, Tim, Munnik, Kate, Rodriguez-Ezpeleta, Naiara, Berteaux-Lecellier, Veronique, Wecker, Patricia, Cancio, Ibon, Vaulot, Daniel, Bienhold, Christina, Ghazal, Hassan, Chaouni, Bouchra, Essayeh, Soumya, Ettamimi, Sara, Zaid, El Houcine, Boukhatem, Noureddine, Bouali, Abderrahim, Chahboune, Rajaa, Barrijal, Said, Timinouni, Mohammed, El Otmani, Fatima, Bennani, Mohamed, Mea, Marianna, Todorova, Nadezhda, Karamfilov, Ventzislav, ten Hoopen, Petra, Cochrane, Guy, L’Haridon, Stephane, Bizsel, Kemal Can, Vezzi, Alessandro, Lauro, Federico M., Martin, Patrick, Jensen, Rachelle M., Hinks, Jamie, Gebbels, Susan, Rosselli, Riccardo, De Pascale, Fabio, Schiavon, Riccardo, dos Santos, Antonina, Villar, Emilie, Pesant, Stéphane, Cataletto, Bruno, Malfatti, Francesca, Edirisinghe, Ranjith, Silveira, Jorge A. Herrera, Barbier, Michele, Turk, Valentina, Tinta, Tinkara, Fuller, Wayne J., Salihoglu, Ilkay, Serakinci, Nedime, Ergoren, Mahmut Cerkez, Bresnan, Eileen, Iriberri, Juan, Nyhus, Paul Anders Fronth, Bente, Edvardsen, Karlsen, Hans Erik, Golyshin, Peter N., Gasol, Josep M., Moncheva, Snejana, Dzhembekova, Nina, Johnson, Zackary, Sinigalliano, Christopher David, Gidley, Maribeth Louise, Zingone, Adriana, Danovaro, Roberto, Tsiamis, George, Clark, Melody S., Costa, Ana Cristina, El Bour, Monia, Martins, Ana M., Collins, R. Eric, Ducluzeau, Anne-Lise, Martinez, Jonathan, Costello, Mark J., Amaral-Zettler, Linda A., Gilbert, Jack A., Davies, Neil, Field, Dawn, and Glöckner, Frank Oliver. Fri . "The Ocean Sampling Day Consortium". United States. https://doi.org/10.1186/s13742-015-0066-5. https://www.osti.gov/servlets/purl/1225000.
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@article{osti_1225000,
title = {The Ocean Sampling Day Consortium},
author = {Kopf, Anna and Bicak, Mesude and Kottmann, Renzo and Schnetzer, Julia and Kostadinov, Ivaylo and Lehmann, Katja and Fernandez-Guerra, Antonio and Jeanthon, Christian and Rahav, Eyal and Ullrich, Matthias and Wichels, Antje and Gerdts, Gunnar and Polymenakou, Paraskevi and Kotoulas, Giorgos and Siam, Rania and Abdallah, Rehab Z. and Sonnenschein, Eva C. and Cariou, Thierry and O’Gara, Fergal and Jackson, Stephen and Orlic, Sandi and Steinke, Michael and Busch, Julia and Duarte, Bernardo and Caçador, Isabel and Canning-Clode, João and Bobrova, Oleksandra and Marteinsson, Viggo and Reynisson, Eyjolfur and Loureiro, Clara Magalhães and Luna, Gian Marco and Quero, Grazia Marina and Löscher, Carolin R. and Kremp, Anke and DeLorenzo, Marie E. and Øvreås, Lise and Tolman, Jennifer and LaRoche, Julie and Penna, Antonella and Frischer, Marc and Davis, Timothy and Katherine, Barker and Meyer, Christopher P. and Ramos, Sandra and Magalhães, Catarina and Jude-Lemeilleur, Florence and Aguirre-Macedo, Ma Leopoldina and Wang, Shiao and Poulton, Nicole and Jones, Scott and Collin, Rachel and Fuhrman, Jed A. and Conan, Pascal and Alonso, Cecilia and Stambler, Noga and Goodwin, Kelly and Yakimov, Michael M. and Baltar, Federico and Bodrossy, Levente and Van De Kamp, Jodie and Frampton, Dion M. F. and Ostrowski, Martin and Van Ruth, Paul and Malthouse, Paul and Claus, Simon and Deneudt, Klaas and Mortelmans, Jonas and Pitois, Sophie and Wallom, David and Salter, Ian and Costa, Rodrigo and Schroeder, Declan C. and Kandil, Mahrous M. and Amaral, Valentina and Biancalana, Florencia and Santana, Rafael and Pedrotti, Maria Luiza and Yoshida, Takashi and Ogata, Hiroyuki and Ingleton, Tim and Munnik, Kate and Rodriguez-Ezpeleta, Naiara and Berteaux-Lecellier, Veronique and Wecker, Patricia and Cancio, Ibon and Vaulot, Daniel and Bienhold, Christina and Ghazal, Hassan and Chaouni, Bouchra and Essayeh, Soumya and Ettamimi, Sara and Zaid, El Houcine and Boukhatem, Noureddine and Bouali, Abderrahim and Chahboune, Rajaa and Barrijal, Said and Timinouni, Mohammed and El Otmani, Fatima and Bennani, Mohamed and Mea, Marianna and Todorova, Nadezhda and Karamfilov, Ventzislav and ten Hoopen, Petra and Cochrane, Guy and L’Haridon, Stephane and Bizsel, Kemal Can and Vezzi, Alessandro and Lauro, Federico M. and Martin, Patrick and Jensen, Rachelle M. and Hinks, Jamie and Gebbels, Susan and Rosselli, Riccardo and De Pascale, Fabio and Schiavon, Riccardo and dos Santos, Antonina and Villar, Emilie and Pesant, Stéphane and Cataletto, Bruno and Malfatti, Francesca and Edirisinghe, Ranjith and Silveira, Jorge A. Herrera and Barbier, Michele and Turk, Valentina and Tinta, Tinkara and Fuller, Wayne J. and Salihoglu, Ilkay and Serakinci, Nedime and Ergoren, Mahmut Cerkez and Bresnan, Eileen and Iriberri, Juan and Nyhus, Paul Anders Fronth and Bente, Edvardsen and Karlsen, Hans Erik and Golyshin, Peter N. and Gasol, Josep M. and Moncheva, Snejana and Dzhembekova, Nina and Johnson, Zackary and Sinigalliano, Christopher David and Gidley, Maribeth Louise and Zingone, Adriana and Danovaro, Roberto and Tsiamis, George and Clark, Melody S. and Costa, Ana Cristina and El Bour, Monia and Martins, Ana M. and Collins, R. Eric and Ducluzeau, Anne-Lise and Martinez, Jonathan and Costello, Mark J. and Amaral-Zettler, Linda A. and Gilbert, Jack A. and Davies, Neil and Field, Dawn and Glöckner, Frank Oliver},
abstractNote = {In this study, Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.},
doi = {10.1186/s13742-015-0066-5},
journal = {GigaScience},
number = 1,
volume = 4,
place = {United States},
year = {Fri Jun 19 00:00:00 EDT 2015},
month = {Fri Jun 19 00:00:00 EDT 2015}
}
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Journal Article:
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https://doi.org/10.1186/s13742-015-0066-5
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Fig. 1 Fig. 1: Map of registered sites for OSD 2014
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Works referenced in this record:

The Earth Microbiome project: successes and aspirations
journal, August 2014

A Holistic Approach to Marine Eco-Systems Biology
journal, October 2011

An index to assess the health and benefits of the global ocean
journal, August 2012

  • Halpern, Benjamin S.; Longo, Catherine; Hardy, Darren
  • Nature, Vol. 488, Issue 7413
  • DOI: 10.1038/nature11397

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
journal, March 2007

Essential Biodiversity Variables
journal, January 2013

Day-length is central to maintaining consistent seasonal diversity in marine bacterioplankton
journal, May 2010

The founding charter of the Genomic Observatories Network
journal, March 2014

  • Davies, Neil; Field, Dawn; Amaral-Zettler, Linda
  • GigaScience, Vol. 3, Issue 1
  • DOI: 10.1186/2047-217x-3-2

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
journal, March 2007

A Holistic Approach to Marine Eco-Systems Biology
journal, October 2011

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    • The GEO Handbook on Biodiversity Observation Networks
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    • de Sousa, António Gaspar G.; Tomasino, Maria Paola; Duarte, Pedro
    • Microbial Ecology, Vol. 78, Issue 2
    • DOI: 10.1007/s00248-018-01314-2

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    • DOI: 10.1038/nchembio.1890

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    • FEMS Microbiology Ecology, Vol. 93, Issue 1
    • DOI: 10.1093/femsec/fiw200

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    journal, November 2015

    • Mitchell, Alex; Bucchini, Francois; Cochrane, Guy
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    • DOI: 10.1093/nar/gkv1195

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    • Amid, Clara; Alako, Blaise T. F.; Balavenkataraman Kadhirvelu, Vishnukumar
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    • DOI: 10.1093/nar/gkz1063

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    • DOI: 10.1098/rstb.2015.0331

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    • Journal of Biomedical Semantics, Vol. 7, Issue 1
    • DOI: 10.1186/s13326-016-0097-6

    Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research
    journal, January 2020

    • Bøifot, Kari Oline; Gohli, Jostein; Moen, Line Victoria
    • Environmental Microbiome, Vol. 15, Issue 1
    • DOI: 10.1186/s40793-019-0349-z

    The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
    journal, August 2017

    Registry of samples and environmental context from the Ocean Sampling Day 2014
    dataset, January 2015

    • Ocean Sampling Day Consortium, Participants
    • PANGAEA, Data Publisher for Earth & Environmental Science, 7078 data points
    • DOI: 10.1594/pangaea.854419

    Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status
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    DNA Sequencing as a Tool to Monitor Marine Ecological Status
    journal, May 2017

    • Goodwin, Kelly D.; Thompson, Luke R.; Duarte, Bernardo
    • Frontiers in Marine Science, Vol. 4
    • DOI: 10.3389/fmars.2017.00107

    A Conceptual Framework for Developing the Next Generation of Marine OBservatories (MOBs) for Science and Society
    journal, September 2018

    • Crise, Alessandro; Ribera d’Alcalà, Maurizio; Mariani, Patrizio
    • Frontiers in Marine Science, Vol. 5
    • DOI: 10.3389/fmars.2018.00318

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    • DOI: 10.3389/fmars.2019.00367

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    • DOI: 10.3389/fmars.2019.00520

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    • DOI: 10.3390/rs8110879

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    • DOI: 10.3204/pubdb-2019-00024

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    Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding
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    MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day
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    Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status
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    DNA Sequencing as a Tool to Monitor Marine Ecological Status
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    Understanding Marine Microbes, the Driving Engines of the Ocean
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    Surfing and dining on the “plastisphere”: Microbial life on plastic marine debris
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