Complete genome assemblies for two single-chromosome Vibrio cholerae isolates, strains 1154-74 (serogroup O49) and 10432-62 (serogroup O27)

Johnson, Shannon Lyn; Khiani, A.; Bishop-Lilly, K. A.; Chapman, C.; Patel, M.; Verratti, K.; Teshima, Hazuki; Munk, A. C.; Bruce, David Carlton; Han, C. S.; Xie, G.; Davenport, Karen Walston; Chain, Patrick Sam Guy; Sozhamannan, S.

doi:10.1128/genomeA.00462-15

Title: Complete genome assemblies for two single-chromosome Vibrio cholerae isolates, strains 1154-74 (serogroup O49) and 10432-62 (serogroup O27)

Abstract

We report the completed genome sequences for two non-O1/non-O139 Vibrio cholerae isolates. Each isolate has only a single chromosome, as opposed to the normal paradigm of two chromosomes found in all other V. cholerae isolates.

Authors:

^[1]; Khiani, A. ^[2]; Bishop-Lilly, K. A. ^[2]; Chapman, C. ^[2]; Patel, M. ^[2]; Verratti, K. ^[2]; Teshima, Hazuki ^[1]; Munk, A. C. ^[1]; Bruce, David Carlton ^[1]; Han, C. S. ^[1]; Xie, G. ^[1]; Davenport, Karen Walston ^[1]; Chain, Patrick Sam Guy ^[1]; Sozhamannan, S. ^[3]

Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Naval Medical Research Center (NMRC)-Frederick, Fort Detrick, MD (United States); Henry M. Jackson Foundation, Bethesda, MD (United States)
Goldbelt Raven, LLC, Frederick, MD (United States)

Publication Date:: Thu May 14 00:00:00 EDT 2015

Research Org.:: Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

Sponsoring Org.:: USDOE

OSTI Identifier:: 1221406

Report Number(s):: LA-UR-15-21518
Journal ID: ISSN 2169-8287

Grant/Contract Number:: AC52-06NA25396

Resource Type:: Accepted Manuscript

Journal Name:: Genome Announcements

Additional Journal Information:: Journal Volume: 3; Journal Issue: 3; Journal ID: ISSN 2169-8287

Publisher:: American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 59 BASIC BIOLOGICAL SCIENCES

Citation Formats


                    Johnson, Shannon Lyn, Khiani, A., Bishop-Lilly, K. A., Chapman, C., Patel, M., Verratti, K., Teshima, Hazuki, Munk, A. C., Bruce, David Carlton, Han, C. S., Xie, G., Davenport, Karen Walston, Chain, Patrick Sam Guy, and Sozhamannan, S. Complete genome assemblies for two single-chromosome Vibrio cholerae isolates, strains 1154-74 (serogroup O49) and 10432-62 (serogroup O27).  United States: N. p., 2015. 
Web.  doi:10.1128/genomeA.00462-15.

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                    Johnson, Shannon Lyn, Khiani, A., Bishop-Lilly, K. A., Chapman, C., Patel, M., Verratti, K., Teshima, Hazuki, Munk, A. C., Bruce, David Carlton, Han, C. S., Xie, G., Davenport, Karen Walston, Chain, Patrick Sam Guy, & Sozhamannan, S. Complete genome assemblies for two single-chromosome Vibrio cholerae isolates, strains 1154-74 (serogroup O49) and 10432-62 (serogroup O27).  United States.  https://doi.org/10.1128/genomeA.00462-15

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                    Johnson, Shannon Lyn, Khiani, A., Bishop-Lilly, K. A., Chapman, C., Patel, M., Verratti, K., Teshima, Hazuki, Munk, A. C., Bruce, David Carlton, Han, C. S., Xie, G., Davenport, Karen Walston, Chain, Patrick Sam Guy, and Sozhamannan, S. Thu .  
"Complete genome assemblies for two single-chromosome Vibrio cholerae isolates, strains 1154-74 (serogroup O49) and 10432-62 (serogroup O27)".  United States.  https://doi.org/10.1128/genomeA.00462-15.  https://www.osti.gov/servlets/purl/1221406.

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@article{osti_1221406,

  title        = {Complete genome assemblies for two single-chromosome Vibrio cholerae isolates, strains 1154-74 (serogroup O49) and 10432-62 (serogroup O27)},

  author       = {Johnson, Shannon Lyn and Khiani, A. and Bishop-Lilly, K. A. and Chapman, C. and Patel, M. and Verratti, K. and Teshima, Hazuki and Munk, A. C. and Bruce, David Carlton and Han, C. S. and Xie, G. and Davenport, Karen Walston and Chain, Patrick Sam Guy and Sozhamannan, S.},

  abstractNote = {We report the completed genome sequences for two non-O1/non-O139 Vibrio cholerae isolates. Each isolate has only a single chromosome, as opposed to the normal paradigm of two chromosomes found in all other V. cholerae isolates.},

  doi          = {10.1128/genomeA.00462-15},

  journal      = {Genome Announcements},

  number       = 3,

  volume       = 3,

  place        = {United States},

  year         = {Thu May 14 00:00:00 EDT 2015},

  month        = {Thu May 14 00:00:00 EDT 2015}

}

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Works referenced in this record:

Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity
journal, March 2015

Chapman, Carol; Henry, Matthew; Bishop-Lilly, Kimberly A.
PLOS ONE, Vol. 10, Issue 3
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Hemmerich, Chris; Buechlein, Aaron; Podicheti, Ram
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The global burden of cholera
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Ali, Mohammad; Lopez, Anna Lena; Ae You, Young
Bulletin of the World Health Organization, Vol. 90, Issue 3
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Chin, Chen-Shan; Alexander, David H.; Marks, Patrick
Nature Methods, Vol. 10, Issue 6
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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Zerbino, D. R.; Birney, E.
Genome Research, Vol. 18, Issue 5
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Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
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Ewing, Brent; Hillier, LaDeana; Wendl, Michael C.
Genome Research, Vol. 8, Issue 3
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Genomic diversity of 2010 Haitian cholera outbreak strains
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Hasan, N. A.; Choi, S. Y.; Eppinger, M.
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Consed: A Graphical Tool for Sequence Finishing
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Gordon, David; Abajian, Chris; Green, Phil
Genome Research, Vol. 8, Issue 3
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Genome Project Standards in a New Era of Sequencing
journal, October 2009

Chain, P. S. G.; Grafham, D. V.; Fulton, R. S.
Science, Vol. 326, Issue 5950
DOI: 10.1126/science.1180614

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Similar Records

Title: Complete genome assemblies for two single-chromosome Vibrio cholerae isolates, strains 1154-74 (serogroup O49) and 10432-62 (serogroup O27)

Abstract

Citation Formats

Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity journal, March 2015

An Ergatis-based prokaryotic genome annotation web server journal, March 2010

The global burden of cholera journal, March 2012

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data journal, May 2013

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal, February 2008

Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment journal, March 1998

Genomic diversity of 2010 Haitian cholera outbreak strains journal, June 2012

Consed: A Graphical Tool for Sequence Finishing journal, March 1998

Genome Project Standards in a New Era of Sequencing journal, October 2009

Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity
journal, March 2015

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journal, March 2010

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journal, March 2012

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journal, May 2013

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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Consed: A Graphical Tool for Sequence Finishing
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journal, October 2009