Complete genome sequence of Cupriavidus basilensis 4G11, isolated from the Oak Ridge Field Research Center site
Abstract
Cupriavidus basilensis 4G11 was isolated from groundwater at the Oak Ridge Field Research Center (FRC) site. Here, we report the complete genome sequence and annotation of Cupriavidus basilensis 4G11. The genome contains 8,421,483 bp, 7,661 predicted protein-coding genes, and a total GC content of 64.4%.
- Authors:
-
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Univ. of California Berkeley, Berkeley, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Univ. of California Berkeley, Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1215401
- Alternate Identifier(s):
- OSTI ID: 1214729; OSTI ID: 1512120
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Genome Announcements
- Additional Journal Information:
- Journal Volume: 3; Journal Issue: 3; Journal ID: ISSN 2169-8287
- Publisher:
- American Society for Microbiology
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Ray, Jayashree, Waters, R. Jordan, Skerker, Jeffrey M., Kuehl, Jennifer V., Price, Morgan N., Huang, Jiawen, Chakraborty, Romy, Arkin, Adam P., and Deutschbauer, Adam. Complete genome sequence of Cupriavidus basilensis 4G11, isolated from the Oak Ridge Field Research Center site. United States: N. p., 2015.
Web. doi:10.1128/genomeA.00322-15.
Ray, Jayashree, Waters, R. Jordan, Skerker, Jeffrey M., Kuehl, Jennifer V., Price, Morgan N., Huang, Jiawen, Chakraborty, Romy, Arkin, Adam P., & Deutschbauer, Adam. Complete genome sequence of Cupriavidus basilensis 4G11, isolated from the Oak Ridge Field Research Center site. United States. https://doi.org/10.1128/genomeA.00322-15
Ray, Jayashree, Waters, R. Jordan, Skerker, Jeffrey M., Kuehl, Jennifer V., Price, Morgan N., Huang, Jiawen, Chakraborty, Romy, Arkin, Adam P., and Deutschbauer, Adam. Thu .
"Complete genome sequence of Cupriavidus basilensis 4G11, isolated from the Oak Ridge Field Research Center site". United States. https://doi.org/10.1128/genomeA.00322-15. https://www.osti.gov/servlets/purl/1215401.
@article{osti_1215401,
title = {Complete genome sequence of Cupriavidus basilensis 4G11, isolated from the Oak Ridge Field Research Center site},
author = {Ray, Jayashree and Waters, R. Jordan and Skerker, Jeffrey M. and Kuehl, Jennifer V. and Price, Morgan N. and Huang, Jiawen and Chakraborty, Romy and Arkin, Adam P. and Deutschbauer, Adam},
abstractNote = {Cupriavidus basilensis 4G11 was isolated from groundwater at the Oak Ridge Field Research Center (FRC) site. Here, we report the complete genome sequence and annotation of Cupriavidus basilensis 4G11. The genome contains 8,421,483 bp, 7,661 predicted protein-coding genes, and a total GC content of 64.4%.},
doi = {10.1128/genomeA.00322-15},
journal = {Genome Announcements},
number = 3,
volume = 3,
place = {United States},
year = {Thu May 14 00:00:00 EDT 2015},
month = {Thu May 14 00:00:00 EDT 2015}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Interactions of core–shell quantum dots with metal resistant bacterium Cupriavidus metallidurans: Consequences for Cu and Pb removal
journal, October 2013
- Slaveykova, Vera I.; Pinheiro, José Paulo; Floriani, Magali
- Journal of Hazardous Materials, Vol. 261
Whole-Genome Sequence of Cupriavidus sp. Strain BIS7, a Heavy-Metal-Resistant Bacterium
journal, October 2012
- Hong, K. W.; Thinagaran, D. a.; Gan, H. M.
- Journal of Bacteriology, Vol. 194, Issue 22
Heavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network
journal, June 2011
- Monsieurs, Pieter; Moors, Hugo; Van Houdt, Rob
- BioMetals, Vol. 24, Issue 6
Bacterial metabolism of methylated amines and identification of novel methylotrophs in Movile Cave
journal, July 2014
- Wischer, Daniela; Kumaresan, Deepak; Johnston, Antonia
- The ISME Journal, Vol. 9, Issue 1
Taxonomy of the genus Cupriavidus: a tale of lost and found
journal, November 2004
- Vandamme, P.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 6
Genome of Cupriavidus sp. HMR-1, a Heavy Metal-Resistant Bacterium
journal, January 2013
- Li, L. -G.; Cai, L.; Zhang, T.
- Genome Announcements, Vol. 1, Issue 1
Connecting lignin-degradation pathway with pre-treatment inhibitor sensitivity of Cupriavidus necator
journal, May 2014
- Wang, Wei; Yang, Shihui; Hunsinger, Glendon B.
- Frontiers in Microbiology, Vol. 5
2,3-Dihydroxypropane-1-sulfonate degraded by Cupriavidus pinatubonensis JMP134: purification of dihydroxypropanesulfonate 3-dehydrogenase
journal, February 2010
- Mayer, J.; Huhn, T.; Habeck, M.
- Microbiology, Vol. 156, Issue 5
Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14
journal, March 2010
- Koopman, F.; Wierckx, N.; de Winde, J. H.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 11
Modeling of Cd Uptake and Efflux Kinetics in Metal-Resistant Bacterium Cupriavidus metallidurans
journal, June 2010
- Hajdu, Rita; Pinheiro, José Paulo; Galceran, Josep
- Environmental Science & Technology, Vol. 44, Issue 12
Heavy metal-resistant bacteria as extremophiles: molecular physiology and biotechnological use of Ralstonia sp. CH34
journal, April 2000
- Nies, D. H.
- Extremophiles, Vol. 4, Issue 2
Aromatic compounds degradation plays a role in colonization of Arabidopsis thaliana and Acacia caven by Cupriavidus pinatubonensis JMP134
journal, December 2011
- Ledger, Thomas; Zúñiga, Ana; Kraiser, Tatiana
- Antonie van Leeuwenhoek, Vol. 101, Issue 4
Pyruvic Oxime Nitrification and Copper and Nickel Resistance by a Cupriavidus pauculus , an Active Heterotrophic Nitrifier-Denitrifier
journal, January 2014
- Ramirez, Miguel; Obrzydowski, Jennifer; Ayers, Mary
- The Scientific World Journal, Vol. 2014
Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8
journal, January 2013
- Shi, Yan; Chai, Liyuan; Tang, Chongjian
- Biotechnology for Biofuels, Vol. 6, Issue 1
The RAST Server: Rapid Annotations using Subsystems Technology
journal, January 2008
- Aziz, Ramy K.; Bartels, Daniela; Best, Aaron A.
- BMC Genomics, Vol. 9, Issue 1, Article No. 75
Works referencing / citing this record:
Cupriavidus malaysiensis sp. nov., a novel poly(3-hydroxybutyrate-co-4-hydroxybutyrate) accumulating bacterium isolated from the Malaysian environment
journal, October 2017
- Ramachandran, Hema; Shafie, Nur Asilla Hani; Sudesh, Kumar
- Antonie van Leeuwenhoek, Vol. 111, Issue 3
Mutant phenotypes for thousands of bacterial genes of unknown function
journal, May 2018
- Price, Morgan N.; Wetmore, Kelly M.; Waters, R. Jordan
- Nature, Vol. 557, Issue 7706
Biomineralization Abilities of Cupriavidus Strain and Bacillus subtilis Strains In Vitro Isolated from Speleothems, Rani Cave, Chhattisgarh, India
journal, February 2017
- Chalia, Swati; Baskar, Sushmitha; Minakshi, Prasad
- Geomicrobiology Journal, Vol. 34, Issue 9