Effect of Divalent Cation Removal on the Structure of Gram-Negative Bacterial Outer Membrane Models
Abstract
The Gram-negative bacterial outer membrane (GNB-OM) is asymmetric in its lipid composition with a phospholipid-rich inner leaflet and an outer leaflet predominantly composed of lipopolysaccharides (LPS). LPS are polyanionic molecules, with numerous phosphate groups present in the lipid A and core oligosaccharide regions. The repulsive forces due to accumulation of the negative charges are screened and bridged by the divalent cations (Mg2+ and Ca2+) that are known to be crucial for the integrity of the bacterial OM. Indeed, chelation of divalent cations is a well-established method to permeabilize Gram-negative bacteria such as Escherichia coli. Here, we use X-ray and neutron reflectivity (XRR and NR, respectively) techniques to examine the role of calcium ions in the stability of a model GNB-OM. Using XRR we show that Ca2+ binds to the core region of the rough mutant LPS (RaLPS) films, producing more ordered structures in comparison to divalent cation free monolayers. Using recently developed solid-supported models of the GNB-OM, we study the effect of calcium removal on the asymmetry of DPPC:RaLPS bilayers. We show that without the charge screening effect of divalent cations, the LPS is forced to overcome the thermodynamically unfavorable energy barrier and flip across the hydrophobic bilayer to minimizemore »
- Authors:
-
- Science and Technology Facilities Council (STFC), Oxford (United Kingdom). Rutherford Appleton Lab., ISIS Pulsed Neutron and Muon Source
- Australian Nuclear Science and Technology Organisation (ANSTO), Menai, NSW (Australia). Bragg Inst.
- Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Newcastle Univ. (United Kingdom). Inst. for Cell and Molecular Biosciences
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1213695
- Alternate Identifier(s):
- OSTI ID: 1392962
- Grant/Contract Number:
- AC02-06CH11357; 093581; DE140101788
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Langmuir
- Additional Journal Information:
- Journal Volume: 31; Journal Issue: 1; Journal ID: ISSN 0743-7463
- Publisher:
- American Chemical Society
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Clifton, Luke A., Skoda, Maximilian W. A., Le Brun, Anton P., Ciesielski, Filip, Kuzmenko, Ivan, Holt, Stephen A., and Lakey, Jeremy H. Effect of Divalent Cation Removal on the Structure of Gram-Negative Bacterial Outer Membrane Models. United States: N. p., 2014.
Web. doi:10.1021/la504407v.
Clifton, Luke A., Skoda, Maximilian W. A., Le Brun, Anton P., Ciesielski, Filip, Kuzmenko, Ivan, Holt, Stephen A., & Lakey, Jeremy H. Effect of Divalent Cation Removal on the Structure of Gram-Negative Bacterial Outer Membrane Models. United States. https://doi.org/10.1021/la504407v
Clifton, Luke A., Skoda, Maximilian W. A., Le Brun, Anton P., Ciesielski, Filip, Kuzmenko, Ivan, Holt, Stephen A., and Lakey, Jeremy H. Tue .
"Effect of Divalent Cation Removal on the Structure of Gram-Negative Bacterial Outer Membrane Models". United States. https://doi.org/10.1021/la504407v. https://www.osti.gov/servlets/purl/1213695.
@article{osti_1213695,
title = {Effect of Divalent Cation Removal on the Structure of Gram-Negative Bacterial Outer Membrane Models},
author = {Clifton, Luke A. and Skoda, Maximilian W. A. and Le Brun, Anton P. and Ciesielski, Filip and Kuzmenko, Ivan and Holt, Stephen A. and Lakey, Jeremy H.},
abstractNote = {The Gram-negative bacterial outer membrane (GNB-OM) is asymmetric in its lipid composition with a phospholipid-rich inner leaflet and an outer leaflet predominantly composed of lipopolysaccharides (LPS). LPS are polyanionic molecules, with numerous phosphate groups present in the lipid A and core oligosaccharide regions. The repulsive forces due to accumulation of the negative charges are screened and bridged by the divalent cations (Mg2+ and Ca2+) that are known to be crucial for the integrity of the bacterial OM. Indeed, chelation of divalent cations is a well-established method to permeabilize Gram-negative bacteria such as Escherichia coli. Here, we use X-ray and neutron reflectivity (XRR and NR, respectively) techniques to examine the role of calcium ions in the stability of a model GNB-OM. Using XRR we show that Ca2+ binds to the core region of the rough mutant LPS (RaLPS) films, producing more ordered structures in comparison to divalent cation free monolayers. Using recently developed solid-supported models of the GNB-OM, we study the effect of calcium removal on the asymmetry of DPPC:RaLPS bilayers. We show that without the charge screening effect of divalent cations, the LPS is forced to overcome the thermodynamically unfavorable energy barrier and flip across the hydrophobic bilayer to minimize the repulsive electrostatic forces, resulting in about 20% mixing of LPS and DPPC between the inner and outer bilayer leaflets. These results reveal for the first time the molecular details behind the well-known mechanism of outer membrane stabilization by divalent cations. This confirms the relevance of the asymmetric models for future studies of outer membrane stability and antibiotic penetration.},
doi = {10.1021/la504407v},
journal = {Langmuir},
number = 1,
volume = 31,
place = {United States},
year = {Tue Dec 09 00:00:00 EST 2014},
month = {Tue Dec 09 00:00:00 EST 2014}
}
Web of Science
Works referenced in this record:
Quantitation of metal cations bound to membranes and extracted lipopolysaccharide of Escherichia coli
journal, April 1983
- Coughlin, Richard T.; Tonsager, Steven; McGroarty, Estelle J.
- Biochemistry, Vol. 22, Issue 8
Monolayer Film Behavior of Lipopolysaccharide from Pseudomonas aeruginosa at the Air−Water Interface
journal, October 2008
- Abraham, Thomas; Schooling, Sarah R.; Beveridge, Terry J.
- Biomacromolecules, Vol. 9, Issue 10
Caractérisation des surfaces par réflexion rasante de rayons X. Application à l'étude du polissage de quelques verres silicates
journal, January 1980
- Névot, L.; Croce, P.
- Revue de Physique Appliquée, Vol. 15, Issue 3
Lipopolysaccharide Diversity Evolving in Helicobacter pylori Communities through Genetic Modifications in Fucosyltransferases
journal, November 2008
- Nilsson, Christina; Skoglund, Anna; Moran, Anthony P.
- PLoS ONE, Vol. 3, Issue 11
Asymmetric phospholipid: lipopolysaccharide bilayers; a Gram-negative bacterial outer membrane mimic
journal, December 2013
- Clifton, Luke A.; Skoda, Maximilian W. A.; Daulton, Emma L.
- Journal of The Royal Society Interface, Vol. 10, Issue 89
Supported phospholipid bilayers
journal, January 1985
- Tamm, L. K.; McConnell, H. M.
- Biophysical Journal, Vol. 47, Issue 1
Mesoscopic and microstructural characterization of liposomes formed by the lipooligosaccharide from Salmonella minnesota strain 595 (Re mutant)
journal, January 2009
- D’Errico, Gerardino; Silipo, Alba; Mangiapia, Gaetano
- Physical Chemistry Chemical Physics, Vol. 11, Issue 13
Role of the Conformational Rigidity in the Design of Biomimetic Antimicrobial Compounds
journal, September 2010
- Ivankin, Andrey; Livne, Liran; Mor, Amram
- Angewandte Chemie International Edition, Vol. 49, Issue 45
A quantitative measure for the goodness of fit in profile refinements with more than 20 degrees of freedom
journal, October 1995
- Ihringer, J.
- Journal of Applied Crystallography, Vol. 28, Issue 5
Floating Lipid Bilayers Deposited on Chemically Grafted Phosphatidylcholine Surfaces
journal, March 2008
- Hughes, Arwel V.; Howse, Jonathan R.; Dabkowska, Aleksandra
- Langmuir, Vol. 24, Issue 5
Principles and applications of grazing incidence X-ray and neutron scattering from ordered molecular monolayers at the air-water interface
journal, October 1994
- Als-Nielsen, Jens; Jacquemain, Didier; Kjaer, Kristian
- Physics Reports, Vol. 246, Issue 5
In situ characterization of lipid A interaction with antimicrobial peptides using surface X-ray scattering
journal, February 2006
- Neville, Frances; Hodges, Chris S.; Liu, Chao
- Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1758, Issue 2
The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria
journal, November 2008
- Pagès, Jean-Marie; James, Chloë E.; Winterhalter, Mathias
- Nature Reviews Microbiology, Vol. 6, Issue 12
Release of lipopolysaccharide by EDTA treatment of E., coli
journal, November 1965
- Leive, Loretta
- Biochemical and Biophysical Research Communications, Vol. 21, Issue 4
Calcium ions induce collapse of charged O-side chains of lipopolysaccharides from Pseudomonas aeruginosa
journal, July 2009
- Schneck, Emanuel; Papp-Szabo, Erzsebet; Quinn, Bonnie E.
- Journal of The Royal Society Interface, Vol. 6, Issue suppl_5
Composition and Asymmetry in Supported Membranes Formed by Vesicle Fusion
journal, June 2011
- Wacklin, Hanna P.
- Langmuir, Vol. 27, Issue 12
Structural Characterization of a Model Gram-Negative Bacterial Surface Using Lipopolysaccharides from Rough Strains of Escherichia coli
journal, May 2013
- Le Brun, Anton P.; Clifton, Luke A.; Halbert, Candice E.
- Biomacromolecules, Vol. 14, Issue 6
Quantitative determination of ion distributions in bacterial lipopolysaccharide membranes by grazing-incidence X-ray fluorescence
journal, May 2010
- Schneck, E.; Schubert, T.; Konovalov, O. V.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 20
Novel methods for studying lipids and lipases and their mutual interaction at interfaces. Part II. Surface sensitive synchrotron X-ray scattering
journal, May 2001
- Jensen, Torben R.; Balashev, Konstantin; Bjørnholm, Thomas
- Biochimie, Vol. 83, Issue 5
Molecular basis of bacterial outer membrane permeability.
journal, January 1985
- Nikaido, H.; Vaara, M.
- Microbiological Reviews, Vol. 49, Issue 1
Divalent Calcium Ions Inhibit the Penetration of Protamine through the Polysaccharide Brush of the Outer Membrane of Gram-Negative Bacteria
journal, October 2003
- Pink, D. A.; Truelstrup Hansen, L.; Gill, T. A.
- Langmuir, Vol. 19, Issue 21
The antimicrobial peptide aurein 1.2 disrupts model membranes via the carpet mechanism
journal, January 2012
- Fernandez, David I.; Le Brun, Anton P.; Whitwell, Thomas C.
- Physical Chemistry Chemical Physics, Vol. 14, Issue 45
A highly efficient procedure for the quantitative formation of intact and viable lysozyme spheroplasts from escherichia coli
journal, August 1987
- Marvin, Hans J. P.; Witholt, Bernard
- Analytical Biochemistry, Vol. 164, Issue 2
INTER the chemical interfaces reflectometer on target station 2 at ISIS
journal, November 2006
- Webster, John; Holt, Stephen; Dalgliesh, Robert
- Physica B: Condensed Matter, Vol. 385-386
Effects of Specific versus Nonspecific Ionic Interactions on the Structure and Lateral Organization of Lipopolysaccharides
journal, May 2011
- Jeworrek, Christoph; Evers, Florian; Howe, Jörg
- Biophysical Journal, Vol. 100, Issue 9
Structure of bacterial lipopolysaccharides
journal, November 2003
- Caroff, Martine; Karibian, Doris
- Carbohydrate Research, Vol. 338, Issue 23
Molecular Dynamics and NMR Spectroscopy Studies of E. coli Lipopolysaccharide Structure and Dynamics
journal, September 2013
- Wu, Emilia L.; Engström, Olof; Jo, Sunhwan
- Biophysical Journal, Vol. 105, Issue 6
High coverage fluid-phase floating lipid bilayers supported by ω-thiolipid self-assembled monolayers
journal, September 2014
- Hughes, Arwel V.; Holt, Stephen A.; Daulton, Emma
- Journal of The Royal Society Interface, Vol. 11, Issue 98
Architecture of the Outer Membrane of Escherichia coli III. Protein-Lipopolysaccharide Complexes in Intramembraneous Particles
journal, June 1978
- van Alphen, Loek; Verkleij, Arie; Leunissen-Bijvelt, Jose
- Journal of Bacteriology, Vol. 134, Issue 3
Structure and function of lipopolysaccharides
journal, July 2002
- Erridge, Clett; Bennett-Guerrero, Elliott; Poxton, Ian R.
- Microbes and Infection, Vol. 4, Issue 8
Interaction of the Third Helix of Antennapedia Homeodomain with a Deposited Phospholipid Bilayer: A Neutron Reflectivity Structural Study
journal, May 2000
- Fragneto, G.; Graner, F.; Charitat, T.
- Langmuir, Vol. 16, Issue 10
Lipid Rearrangement in DSPC/DMPC Bilayers: A Neutron Reflectometry Study
journal, October 2012
- Gerelli, Yuri; Porcar, Lionel; Fragneto, Giovanna
- Langmuir, Vol. 28, Issue 45
Critical Aggregation Concentrations of Gram-Negative Bacterial Lipopolysaccharides (LPS)
journal, December 1998
- Aurell, Christina A.; Wistrom, Anders O.
- Biochemical and Biophysical Research Communications, Vol. 253, Issue 1
Electrostatic modification of the lipopolysaccharide layer: competing effects of divalent cations and polycationic or polyanionic molecules
journal, January 2014
- Lam, Norman H.; Ma, Zheng; Ha, Bae-Yeun
- Soft Matter, Vol. 10, Issue 38
TRANSLOCATION Project: How to Get Good Drugs into Bad Bugs
journal, March 2014
- Stavenger, R. A.; Winterhalter, M.
- Science Translational Medicine, Vol. 6, Issue 228
Adsorption of Mixed Cationic and Nonionic Surfactants at the Hydrophilic Silicon Surface from Aqueous Solution: Studied by Specular Neutron Reflection
journal, December 1997
- Penfold, J.; Staples, E. J.; Tucker, I.
- Langmuir, Vol. 13, Issue 25
Evaluation of Lipopolysaccharide Aggregation by Light Scattering Spectroscopy
journal, January 2003
- Santos, Nuno C.; Silva, Ana C.; Castanho, Miguel A. R. B.
- ChemBioChem, Vol. 4, Issue 1
Agents that increase the permeability of the outer membrane.
journal, January 1992
- Vaara, M.
- Microbiological Reviews, Vol. 56, Issue 3
Interaction of Cationic Lipid/DNA Complexes with Model Membranes As Determined by Neutron Reflectivity
journal, December 2008
- Callow, P.; Fragneto, G.; Cubitt, R.
- Langmuir, Vol. 25, Issue 7
In-Vitro Effect of Edta-Tris-Lysozyme Solutions on Selected Pathogenic Bacteria
journal, February 1975
- Wooley, R. E.; Blue, J. L.
- Journal of Medical Microbiology, Vol. 8, Issue 1
Molecular basis of bacterial outer membrane permeability
journal, March 1985
- Nikaido, H.; Vaara, M.
- Microbiological Reviews, Vol. 49, Issue 1
Works referencing / citing this record:
The antimicrobial peptide thanatin disrupts the bacterial outer membrane and inactivates the NDM-1 metallo-β-lactamase
journal, August 2019
- Ma, Bo; Fang, Chao; Lu, Linshan
- Nature Communications, Vol. 10, Issue 1
Liquid crystalline bacterial outer membranes are critical for antibiotic susceptibility
journal, July 2018
- Paracini, Nicolò; Clifton, Luke A.; Skoda, Maximilian W. A.
- Proceedings of the National Academy of Sciences, Vol. 115, Issue 32
Potentiating the Activity of Nisin against Escherichia coli
journal, February 2016
- Zhou, Liang; van Heel, Auke J.; Montalban-Lopez, Manuel
- Frontiers in Cell and Developmental Biology, Vol. 4
Antibiotic resistance breakers: can repurposed drugs fill the antibiotic discovery void?
journal, October 2015
- Brown, David
- Nature Reviews Drug Discovery, Vol. 14, Issue 12
Lipid composition in fungal membrane models: effect of lipid fluidity
text, January 2018
- Florek, Olga B.; Clifton, Luke A.; Wilde, Marleen
- International Union of Crystallography (IUCr)
Pseudomonas bacteriocin syringacin M released upon desiccation suppresses the growth of sensitive bacteria in plant necrotic lesions
journal, January 2020
- Li, Jun‐Zhou; Zhou, Li‐Ying; Peng, You‐Liang
- Microbial Biotechnology, Vol. 13, Issue 1
The effect of drinking water pH on the human gut microbiota and glucose regulation: results of a randomized controlled cross-over intervention
journal, November 2018
- Hansen, Tue H.; Thomassen, Mette T.; Madsen, Mia L.
- Scientific Reports, Vol. 8, Issue 1
Short Cationic Peptidomimetic Antimicrobials
journal, April 2019
- Kuppusamy, Rajesh; Willcox, Mark; Black, David StC.
- Antibiotics, Vol. 8, Issue 2, p. 44
Amphiphilic polypyrrole-poly(Schiff base) copolymers with poly(ethylene glycol) side chains: synthesis, properties and applications
journal, January 2018
- Molina, Brenda G.; Cianga, Luminita; Bendrea, Anca-Dana
- Polymer Chemistry, Vol. 9, Issue 31
Lipid composition in fungal membrane models: effect of lipid fluidity
journal, November 2018
- Florek, Olga B.; Clifton, Luke A.; Wilde, Marleen
- Acta Crystallographica Section D Structural Biology, Vol. 74, Issue 12
Inactivation of Escherichia Coli O157:H7 and Listeria Innocua by Benzoic Acid, Ethylenediaminetetraacetic Acid and Their Combination in Model Wash Water and Simulated Spinach Washing: Benzoic acid and EDTA as antimicrobial…
journal, February 2018
- Alborzi, Solmaz; Bastarrachea, Luis J.; Ding, Qiao
- Journal of Food Science, Vol. 83, Issue 4
A tethered bilayer lipid membrane that mimics microbial membranes
journal, January 2018
- Andersson, Jakob; Fuller, Melanie A.; Wood, Kathleen
- Physical Chemistry Chemical Physics, Vol. 20, Issue 18
Ions, metabolites, and cells: Water as a reporter of surface conditions during bacterial growth
journal, June 2018
- Jarisz, Tasha A.; Lane, Sarah; Gozdzialski, Lea
- The Journal of Chemical Physics, Vol. 148, Issue 22
On mechanisms of colicin import: the outer membrane quandary
journal, December 2018
- Cramer, William A.; Sharma, Onkar; Zakharov, S. D.
- Biochemical Journal, Vol. 475, Issue 23
High-throughput time-resolved morphology screening in bacteria reveals phenotypic responses to antibiotics
journal, July 2019
- Zahir, Taiyeb; Camacho, Rafael; Vitale, Raffaele
- Communications Biology, Vol. 2, Issue 1
Antibiotic Hybrids: the Next Generation of Agents and Adjuvants against Gram-Negative Pathogens?
journal, March 2018
- Domalaon, Ronald; Idowu, Temilolu; Zhanel, George G.
- Clinical Microbiology Reviews, Vol. 31, Issue 2
Seven-transmembrane receptor protein RgsP and cell wall-binding protein RgsM promote unipolar growth in Rhizobiales
journal, August 2018
- Schäper, Simon; Yau, Hamish C. L.; Krol, Elizaveta
- PLOS Genetics, Vol. 14, Issue 8
Design, antimicrobial activity and mechanism of action of Arg-rich ultra-short cationic lipopeptides
journal, February 2019
- Armas, Federica; Pacor, Sabrina; Ferrari, Elena
- PLOS ONE, Vol. 14, Issue 2
The Role of Solid Support Bound Metal Chelators on System-Dependent Synergy and Antagonism with Nisin: System-dependent antimicrobial synergy…
journal, February 2019
- Herskovitz, Joshua E.; Worobo, Randy W.; Goddard, Julie M.
- Journal of Food Science, Vol. 84, Issue 3
Antibiotic resistance and host immune evasion in Staphylococcus aureus mediated by a metabolic adaptation
journal, February 2019
- Jiang, Jhih-Hang; Bhuiyan, Md Saruar; Shen, Hsin-Hui
- Proceedings of the National Academy of Sciences, Vol. 116, Issue 9
Ionic liquids strongly affect the interaction of bacteria with magnesium oxide and silica nanoparticles
journal, January 2019
- Borkowski, Andrzej; Syczewski, Marcin; Czarnecka-Skwarek, Anna
- RSC Advances, Vol. 9, Issue 49
Chitosan as a Wound Dressing Starting Material: Antimicrobial Properties and Mode of Action
journal, November 2019
- Matica, Mariana Adina; Aachmann, Finn Lillelund; Tøndervik, Anne
- International Journal of Molecular Sciences, Vol. 20, Issue 23, p. 5889
Pentamidine sensitizes Gram-negative pathogens to antibiotics and overcomes acquired colistin resistance
journal, March 2017
- Stokes, Jonathan M.; MacNair, Craig R.; Ilyas, Bushra
- Nature Microbiology, Vol. 2, Issue 5
Antimicrobial Peptides: An Emerging Category of Therapeutic Agents
journal, December 2016
- Mahlapuu, Margit; Håkansson, Joakim; Ringstad, Lovisa
- Frontiers in Cellular and Infection Microbiology, Vol. 6