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Title: Chromatic patchy particles: Effects of specific interactions on liquid structure

Abstract

We study the structural and thermodynamic properties of patchy particle liquids, with a special focus on the role of “color,” i.e., specific interactions between individual patches. A possible experimental realization of such “chromatic” interactions is by decorating the particle patches with single-stranded DNA linkers. The complementarity of the linkers can promote selective bond formation between predetermined pairs of patches. By using MD simulations, we compare the local connectivity, the bond orientation order, and other structural properties of the aggregates formed by the “colored” and “colorless” systems. The analysis is done for spherical particles with two different patch arrangements (tetrahedral and cubic). It is found that the aggregated (liquid) phase of the “colorless” patchy particles is better connected, denser and typically has stronger local order than the corresponding “colored” one. This, in turn, makes the colored liquid less stable thermodynamically. Specifically, we predict that in a typical case the chromatic interactions should increase the relative stability of the crystalline phase with respect to the disordered liquid, thus expanding its region in the phase diagram.

Authors:
 [1];  [2];  [3]
  1. Max-Planck-Institut fur Intelligente Systeme, Stuttgart (Germany); Univ. Stuttgart, Stuttgart (Germany)
  2. Brookhaven National Lab. (BNL), Upton, NY (United States)
  3. Joint Institute for High Temperatures, Moscow (Russia); Institute for Information Transmission Problems, Moscow (Russia); Moscow Institute of Physics and Technology, Moscow (Russia)
Publication Date:
Research Org.:
Brookhaven National Laboratory (BNL), Upton, NY (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1213391
Alternate Identifier(s):
OSTI ID: 1193908
Report Number(s):
BNL-108289-2015-JA
Journal ID: ISSN 1539-3755; PLEEE8; KC0403020
Grant/Contract Number:  
SC00112704; SC0012704
Resource Type:
Accepted Manuscript
Journal Name:
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics
Additional Journal Information:
Journal Volume: 92; Journal Issue: 1; Journal ID: ISSN 1539-3755
Publisher:
American Physical Society (APS)
Country of Publication:
United States
Language:
English
Subject:
77 NANOSCIENCE AND NANOTECHNOLOGY

Citation Formats

Vasilyev, Oleg A., Tkachenko, Alexei V., and Klumov, Boris A. Chromatic patchy particles: Effects of specific interactions on liquid structure. United States: N. p., 2015. Web. doi:10.1103/PhysRevE.92.012308.
Vasilyev, Oleg A., Tkachenko, Alexei V., & Klumov, Boris A. Chromatic patchy particles: Effects of specific interactions on liquid structure. United States. https://doi.org/10.1103/PhysRevE.92.012308
Vasilyev, Oleg A., Tkachenko, Alexei V., and Klumov, Boris A. Mon . "Chromatic patchy particles: Effects of specific interactions on liquid structure". United States. https://doi.org/10.1103/PhysRevE.92.012308. https://www.osti.gov/servlets/purl/1213391.
@article{osti_1213391,
title = {Chromatic patchy particles: Effects of specific interactions on liquid structure},
author = {Vasilyev, Oleg A. and Tkachenko, Alexei V. and Klumov, Boris A.},
abstractNote = {We study the structural and thermodynamic properties of patchy particle liquids, with a special focus on the role of “color,” i.e., specific interactions between individual patches. A possible experimental realization of such “chromatic” interactions is by decorating the particle patches with single-stranded DNA linkers. The complementarity of the linkers can promote selective bond formation between predetermined pairs of patches. By using MD simulations, we compare the local connectivity, the bond orientation order, and other structural properties of the aggregates formed by the “colored” and “colorless” systems. The analysis is done for spherical particles with two different patch arrangements (tetrahedral and cubic). It is found that the aggregated (liquid) phase of the “colorless” patchy particles is better connected, denser and typically has stronger local order than the corresponding “colored” one. This, in turn, makes the colored liquid less stable thermodynamically. Specifically, we predict that in a typical case the chromatic interactions should increase the relative stability of the crystalline phase with respect to the disordered liquid, thus expanding its region in the phase diagram.},
doi = {10.1103/PhysRevE.92.012308},
journal = {Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics},
number = 1,
volume = 92,
place = {United States},
year = {Mon Jul 13 00:00:00 EDT 2015},
month = {Mon Jul 13 00:00:00 EDT 2015}
}

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Cited by: 13 works
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Works referenced in this record:

Investigating the geometrical structure of disordered sphere packings
journal, August 2004

  • Aste, T.; Saadatfar, M.; Sakellariou, A.
  • Physica A: Statistical Mechanics and its Applications, Vol. 339, Issue 1-2
  • DOI: 10.1016/j.physa.2004.03.034

Accurate determination of crystal structures based on averaged local bond order parameters
journal, September 2008

  • Lechner, Wolfgang; Dellago, Christoph
  • The Journal of Chemical Physics, Vol. 129, Issue 11
  • DOI: 10.1063/1.2977970

Molecular dynamics simulations of crystallization of hard spheres
journal, December 2002


Real-Space Imaging of Nucleation and Growth in Colloidal Crystallization
journal, April 2001


Structural properties of 3D complex plasmas: experiments versus simulations
journal, November 2009


Fluid–fluid coexistence in colloidal systems with short-ranged strongly directional attraction
journal, June 2003

  • Kern, Norbert; Frenkel, Daan
  • The Journal of Chemical Physics, Vol. 118, Issue 21
  • DOI: 10.1063/1.1569473

Icosahedral Bond Orientational Order in Supercooled Liquids
journal, November 1981


Structural features of a Lennard-Jones system at melting and crystallization
journal, May 2013


Structural properties of 3D complex plasmas under microgravity conditions
journal, October 2010


Colloids with valence and specific directional bonding
journal, October 2012


The stability of a crystal with diamond structure for patchy particles with tetrahedral symmetry
journal, June 2010

  • Noya, Eva G.; Vega, Carlos; Doye, Jonathan P. K.
  • The Journal of Chemical Physics, Vol. 132, Issue 23
  • DOI: 10.1063/1.3454907

Bond-orientational order in liquids and glasses
journal, July 1983

  • Steinhardt, Paul J.; Nelson, David R.; Ronchetti, Marco
  • Physical Review B, Vol. 28, Issue 2
  • DOI: 10.1103/PhysRevB.28.784

Dense Packing and Symmetry in Small Clusters of Microspheres
journal, July 2003

  • Manoharan, Vinothan N.; Elsesser, Mark T.; Pine, David J.
  • Science, Vol. 301, Issue 5632, p. 483-487
  • DOI: 10.1126/science.1086189

DNA-programmed mesoscopic architecture
journal, June 2013


Ten Years of Plasma Crystals - from ICPIG (Bochum) to ICPIG (Greifswald)
journal, September 2004

  • Morfill, G. E.; Ivlev, A. V.; Khrapak, S. A.
  • Contributions to Plasma Physics, Vol. 44, Issue 56
  • DOI: 10.1002/ctpp.200410063

Characteristics of crystallization of complex plasmas in narrow channels
journal, November 2008

  • Klumov, B. A.; Morfill, G. E.
  • Journal of Experimental and Theoretical Physics, Vol. 107, Issue 5
  • DOI: 10.1134/S106377610811023X

Variations around disordered close packing
journal, June 2005


Singularity free algorithm for molecular dynamics simulation of rigid polyatomics
journal, August 1977


Melting of multilayer colloidal crystals confined between two walls
journal, January 2011


Bicontinuous and mixed gels in binary mixtures of patchy colloidal particles
journal, January 2012

  • de las Heras, Daniel; Tavares, José Maria; Telo da Gama, Margarida M.
  • Soft Matter, Vol. 8, Issue 6
  • DOI: 10.1039/c1sm06948a

Understanding tetrahedral liquids through patchy colloids
journal, December 2013

  • Saika-Voivod, Ivan; Smallenburg, Frank; Sciortino, Francesco
  • The Journal of Chemical Physics, Vol. 139, Issue 23
  • DOI: 10.1063/1.4840695

Structural origin of dynamic heterogeneity in three-dimensional colloidal glass formers and its link to crystal nucleation
journal, May 2010


Free energy of ionic hydration: Analysis of a thermodynamic integration technique to evaluate free energy differences by molecular dynamics simulations
journal, November 1988

  • Straatsma, T. P.; Berendsen, H. J. C.
  • The Journal of Chemical Physics, Vol. 89, Issue 9
  • DOI: 10.1063/1.455539

Crystallization of tetrahedral patchy particles in silico
journal, May 2011

  • Romano, Flavio; Sanz, Eduardo; Sciortino, Francesco
  • The Journal of Chemical Physics, Vol. 134, Issue 17
  • DOI: 10.1063/1.3578182

Role of the Range in the Fluid−Crystal Coexistence for a Patchy Particle Model
journal, November 2009

  • Romano, Flavio; Sanz, Eduardo; Sciortino, Francesco
  • The Journal of Physical Chemistry B, Vol. 113, Issue 46
  • DOI: 10.1021/jp9081905

Anisotropy of building blocks and their assembly into complex structures
journal, August 2007

  • Glotzer, Sharon C.; Solomon, Michael J.
  • Nature Materials, Vol. 6, Issue 8, p. 557-562
  • DOI: 10.1038/nmat1949

Geometric Frustration of Icosahedron in Metallic Glasses
journal, July 2013


Numerical calculation of the rate of crystal nucleation in a Lennard‐Jones system at moderate undercooling
journal, June 1996

  • Rein ten Wolde, Pieter; Ruiz‐Montero, Maria J.; Frenkel, Daan
  • The Journal of Chemical Physics, Vol. 104, Issue 24
  • DOI: 10.1063/1.471721

Self-Assembly of Patchy Particles into Diamond Structures through Molecular Mimicry
journal, December 2005

  • Keys, Aaron S.; Chen, Ting; Glotzer, Sharon C.
  • Langmuir, Vol. 21, Issue 25, p. 11547-11551
  • DOI: 10.1021/la0513611

Computer simulations of dense hard‐sphere systems
journal, November 1996

  • Rintoul, M. D.; Torquato, S.
  • The Journal of Chemical Physics, Vol. 105, Issue 20
  • DOI: 10.1063/1.473004

Complex plasma in narrow channels: Impact of confinement on the local order
journal, July 2007


Liquids more stable than crystals in particles with limited valence and flexible bonds
journal, August 2013

  • Smallenburg, Frank; Sciortino, Francesco
  • Nature Physics, Vol. 9, Issue 9
  • DOI: 10.1038/nphys2693

Structural properties of dense hard sphere packings
journal, May 2011


Precursors of order in aggregates of patchy particles
journal, July 2013


On melting criteria for complex plasma
journal, January 2011


On the representatation of orientation space
journal, August 1977


Works referencing / citing this record:

Cooling rate dependence of simulated Cu 64.5 Zr 35.5 metallic glass structure
journal, July 2016

  • Ryltsev, R. E.; Klumov, B. A.; Chtchelkatchev, N. M.
  • The Journal of Chemical Physics, Vol. 145, Issue 3
  • DOI: 10.1063/1.4958631

Polytetrahedral structure and glass-forming ability of simulated Ni–Zr alloys
journal, October 2018

  • Klumov, B. A.; Ryltsev, R. E.; Chtchelkatchev, N. M.
  • The Journal of Chemical Physics, Vol. 149, Issue 13
  • DOI: 10.1063/1.5041325

Cooling rate dependence of simulated ${\rm Cu_{64.5}Zr_{35.5}}$ metallic glass structure
text, January 2016